BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G52350.1 Length=1761 Score E Sequences producing significant alignments: (Bits) Value Ahg331604 jgi|Araly1|331604|fgenesh1_pm.C_scaffold_8000947 2300 0.0 > Ahg331604 jgi|Araly1|331604|fgenesh1_pm.C_scaffold_8000947 Length=1728 Score = 2300 bits (1245), Expect = 0.0 Identities = 1537/1675 (92%), Gaps = 31/1675 (2%) Strand=Plus/Plus Query 79 TACGAATGTACTAAATGCGGTATCTTCTTCCACAGGGATTCCGTCGAGTCCGCAACAGAG 138 ||||||||| |||||||||||||||||||||||| ||| | | ||||||| |||||||| Sbjct 79 TACGAATGTCCTAAATGCGGTATCTTCTTCCACAAGGAATGCACCGAGTCCACAACAGAG 138 Query 139 ATTAACCCTCACGAAAACCTAGGAGAGGTAAGAGCGGTTGAAGACAAACCCAACAATGAA 198 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 139 ATTAACGCTCACGAAAACCTAGGAGAGGTAAGAGCGGTTGAAGACAAACCCAACGATGAA 198 Query 199 TCTATCAAGGTAGACGAAAGAGGAACATGCAACTTTCATTTCATAGATGAACATCATGGT 258 |||||||| || || ||||||||| || ||||| ||||||||| ||||||||||||||| Sbjct 199 TCTATCAAAGTTGATGAAAGAGGAGCAAGCAACATTCATTTCACAGATGAACATCATGGA 258 Query 259 AAGGTTGATGGTAT--A-AACACAGAATATGATGCGTCCAAGTTCAAACAGATTCTGGAA 315 |||||||||| ||| | ||||||| ||||||||| | |||||||||||||||||||||| Sbjct 259 AAGGTTGATGATATAAACAACACAGGATATGATGCTTGCAAGTTCAAACAGATTCTGGAA 318 Query 316 AATTACAGCAAGCTAACAGAACCTAATCAACTTTTCGAGTGTCTCCCAAGCAATCTTCGG 375 ||||||||||||| || ||||||||| || |||||||||||||||||||||||||||||| Sbjct 319 AATTACAGCAAGCCAATAGAACCTAAACACCTTTTCGAGTGTCTCCCAAGCAATCTTCGG 378 Query 376 CCACCGTCAGACGATG-AAGGTAGTGACGGAAAGAGCCATGATCCACAATCAAATGGCTT 434 ||| | ||||||| || || |||||||||||||||| |||||||||||||||||||||| Sbjct 379 CCATCATCAGACGGTGCAA-GTAGTGACGGAAAGAGTTATGATCCACAATCAAATGGCTT 437 Query 435 AG-GAAAAACTGATTATACGGTCCCAACAATCATCCCACCAACGGTTTTGCCTGTGCTTC 493 || |||| | ||||| |||||||||||||||||||||||||| |||||||||| |||||| Sbjct 438 AGAGAAAGA-TGATTTTACGGTCCCAACAATCATCCCACCAATGGTTTTGCCTCTGCTTC 496 Query 494 ATGATTTAGCCCAACAGATGGTTAAAGCTGGTCATCAGCAAGAACTTTTCAAAACTTACA 553 |||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||| Sbjct 497 ATGATTTAGCCCAACAAATGGTTAAAGCTGGTCATCAGCAACAACTTTTCGAAACTTACA 556 Query 554 GGGATATTCGTAGGGCAGTGTTGGCGCAGAGCCTTGAGAAATTAGGTGTAGAGAGACATA 613 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 557 GGGATACTCGTAGGGCAGTGTTGGAGCAGAGCCTTGAGAAATTAGGTGTAGAGAGACATA 616 Query 614 GCAAATATGATGTTGAGAGAATGAATCAGGACGTCTTCGAGGCCAAGATTATGAATTGGA 673 ||||| ||| |||| |||||||||| ||||| |||| || |||||||| |||||||| Sbjct 617 GCAAAGATGCTGTTCAGAGAATGAAGGAGGACATCTTAGATGCCAAGATGCGGAATTGGA 676 Query 674 TCCATTACATTCGAATATCTGTGAAACTGTTATTTGCTGCGGAGAAGGAAATCTGCCACC 733 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 677 TCCATTACATGCGAATATCTGTGAAACTGTTATTTGCTGCGGAAAAGGAAATCTGCAACC 736 Query 734 AAATACTTGATGGTGTTGAGCCATTTAGAGATCAATCTTTTGCTGAAATCACTACTATTA 793 ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 737 AAATACTTGATGGTGTTGAGCCACTTAGAGATCAGTCTTTTGCTGAAATCACTACTATTA 796 Query 794 GTTTTGGTATGCTTCTTAGTTTCGGATATGCTATCGCTATCAGCAGGAGATCGCCGGAAA 853 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 797 GTTTTGATATGCTTCTTAGTTTCGGATATGCAATCGCTATCAGCAGGAGATCGCCGGAAA 856 Query 854 AAGTGTTTGTTATCTTAGATATGTATGAGATAATGATAGAGCTTCAACCAGAGTTTGAGT 913 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 857 AACTGTTTGTTATCTTAGATATGTATGAGATAATGATAGAGCTTCAACCAGAGTTTGAGT 916 Query 914 TGATCTTTGGAAGCAAACCTTGTACTGAGATGAAAGAAGATGCACTGAATCTGACAAAGC 973 |||||||||||||| |||||||| | |||||||||||||||||| ||||||||||||||| Sbjct 917 TGATCTTTGGAAGCCAACCTTGTTCCGAGATGAAAGAAGATGCATTGAATCTGACAAAGC 976 Query 974 TATTAGCTCAAACTGTGAAAGAAACTATTGCTGATTTCGAAGTTGCTATTGAAATGGATG 1033 |||||||||| || |||||||||||||||| ||||||||||| ||| |||||||||||| Sbjct 977 TATTAGCTCAGACAGTGAAAGAAACTATTGTTGATTTCGAAGACGCTGTTGAAATGGATG 1036 Query 1034 CGACTGAAACCGTTGTTATGGATGGATCCGTACATGCGCTAACTAGCTACGTTGCA-AGA 1092 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 1037 CGACTGAAACCGTTGTTATGGATGGATCCGTACATGCGCTAACTAGCTACGTTG-AGAGA 1095 Query 1093 TACGTCAAGTTCTTGTTCGATTACGAACCGACGTTGAGGCAACTTTTTCAAGAGTTTAAT 1152 ||||||| || ||||||||||||| || ||||||||||||||||| | || Sbjct 1096 TACGTCACGTACTTGTTCGATTACAAATCGACGTTGAGGCAACTT---C-----TT---- 1143 Query 1153 AGTAATGATCCTGATACCAAGCTTAAATCCGTGATGACGGGTATCATGAGGGCTTTAAGG 1212 |||||||||||||| ||||||| | | |||||||||||||||||||||| | Sbjct 1144 ---------CCTGATACCAAGCTGAAATCCGCGTTAACGGGTATCATGAGGGCTTTAATG 1194 Query 1213 AACAATCTGGATGGTAAATCTAGACAGTTCGAAGATGCAGCATTAACTCAACTATTCTTA 1272 |||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||| Sbjct 1195 AACAATCTGGATGGTAAATCCAGACAGTACGAAGATGCAGCATTATCTCAACTATTCTTA 1254 Query 1273 ATGAATAATGTGTATTACATTGTAAGAAATTTCAGAAGGGAAGAAGCAAAGAATTTTTTG 1332 |||||||||||||||||||| || ||| |||| |||||||||||||||||| |||| ||| Sbjct 1255 ATGAATAATGTGTATTACATAGTGAGACATTTTAGAAGGGAAGAAGCAAAGGATTTGTTG 1314 Query 1333 GGTGATGATTTGGTTCAAACACATAGAAGAATCGTACAACAACACGCAAAACAGTACCAG 1392 |||||||||| ||||||||||||| |||||||| || ||||||||||||| ||||||||| Sbjct 1315 GGTGATGATTGGGTTCAAACACATGGAAGAATCATAAAACAACACGCAAATCAGTACCAG 1374 Query 1393 ACAATTTCCTGGAATAAGATTTTACAGTGTATCACGGTTCAGTCGAGTAAGAGCGGTCTG 1452 ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1375 ACAGTTTCTTGGAATAAGATTTTACAGTGTATCACGGTTCAGTCGAGTAAGAGCGGTCTG 1434 Query 1453 ATAAAGAATGAAAGTATaaaaaaaaCTTTAGTAAAAGAAAAATTCAAGACTTTCAATTCT 1512 |||||||| ||||||||| |||||| |||||||||||||||||||||||||| |||||| Sbjct 1435 ATAAAGAACAAAAGTATAACAAAAACATTAGTAAAAGAAAAATTCAAGACTTTTAATTCT 1494 Query 1513 CAATTCGAAGAGCTTCACCAGAGACAATGCCAATGGTCCGTTTCGGACGTTGAGCTGCGT 1572 ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| Sbjct 1495 CAATTCGAAGAGCTTCACCAGAGACAATGCCAATGGTTAGTTCCGGACGTTGAGATGCGT 1554 Query 1573 GAATCTCTCAGGCTTGCTATTGCAGAGGTTCTTTTACCTGCCTACGGATCGTTTCTCAAA 1632 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1555 GAATCTCTCAGGCTTGCTATTGCAGAGGTTCTTTTACCTGCCTACGGATCGTTTCTCAAA 1614 Query 1633 CGTTTCGGGCCGATGATTGAGAGTGGTAAGAACTCACAGAAGTATATAAGGTTCACTCCT 1692 | ||||||||||||||| |||||||||||||||||||||| |||||||||||||||| || Sbjct 1615 CATTTCGGGCCGATGATAGAGAGTGGTAAGAACTCACAGACGTATATAAGGTTCACTACT 1674 Query 1693 GAGGACCTTGAGCGAATGCTTAACGATTTCTTCCAAGGAAAAAACTTGGATGTGA 1747 ||||||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 1675 GAGGACCTTGAGCGAATGCTTAACGATTTCTTCGAAGGAAAAAACTTGGA-GTGA 1728 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66086575075 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5