BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52350.1
Length=1761
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331604 jgi|Araly1|331604|fgenesh1_pm.C_scaffold_8000947 2300 0.0
> Ahg331604 jgi|Araly1|331604|fgenesh1_pm.C_scaffold_8000947
Length=1728
Score = 2300 bits (1245), Expect = 0.0
Identities = 1537/1675 (92%), Gaps = 31/1675 (2%)
Strand=Plus/Plus
Query 79 TACGAATGTACTAAATGCGGTATCTTCTTCCACAGGGATTCCGTCGAGTCCGCAACAGAG 138
||||||||| |||||||||||||||||||||||| ||| | | ||||||| ||||||||
Sbjct 79 TACGAATGTCCTAAATGCGGTATCTTCTTCCACAAGGAATGCACCGAGTCCACAACAGAG 138
Query 139 ATTAACCCTCACGAAAACCTAGGAGAGGTAAGAGCGGTTGAAGACAAACCCAACAATGAA 198
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 139 ATTAACGCTCACGAAAACCTAGGAGAGGTAAGAGCGGTTGAAGACAAACCCAACGATGAA 198
Query 199 TCTATCAAGGTAGACGAAAGAGGAACATGCAACTTTCATTTCATAGATGAACATCATGGT 258
|||||||| || || ||||||||| || ||||| ||||||||| |||||||||||||||
Sbjct 199 TCTATCAAAGTTGATGAAAGAGGAGCAAGCAACATTCATTTCACAGATGAACATCATGGA 258
Query 259 AAGGTTGATGGTAT--A-AACACAGAATATGATGCGTCCAAGTTCAAACAGATTCTGGAA 315
|||||||||| ||| | ||||||| ||||||||| | ||||||||||||||||||||||
Sbjct 259 AAGGTTGATGATATAAACAACACAGGATATGATGCTTGCAAGTTCAAACAGATTCTGGAA 318
Query 316 AATTACAGCAAGCTAACAGAACCTAATCAACTTTTCGAGTGTCTCCCAAGCAATCTTCGG 375
||||||||||||| || ||||||||| || ||||||||||||||||||||||||||||||
Sbjct 319 AATTACAGCAAGCCAATAGAACCTAAACACCTTTTCGAGTGTCTCCCAAGCAATCTTCGG 378
Query 376 CCACCGTCAGACGATG-AAGGTAGTGACGGAAAGAGCCATGATCCACAATCAAATGGCTT 434
||| | ||||||| || || |||||||||||||||| ||||||||||||||||||||||
Sbjct 379 CCATCATCAGACGGTGCAA-GTAGTGACGGAAAGAGTTATGATCCACAATCAAATGGCTT 437
Query 435 AG-GAAAAACTGATTATACGGTCCCAACAATCATCCCACCAACGGTTTTGCCTGTGCTTC 493
|| |||| | ||||| |||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 438 AGAGAAAGA-TGATTTTACGGTCCCAACAATCATCCCACCAATGGTTTTGCCTCTGCTTC 496
Query 494 ATGATTTAGCCCAACAGATGGTTAAAGCTGGTCATCAGCAAGAACTTTTCAAAACTTACA 553
|||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||
Sbjct 497 ATGATTTAGCCCAACAAATGGTTAAAGCTGGTCATCAGCAACAACTTTTCGAAACTTACA 556
Query 554 GGGATATTCGTAGGGCAGTGTTGGCGCAGAGCCTTGAGAAATTAGGTGTAGAGAGACATA 613
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 557 GGGATACTCGTAGGGCAGTGTTGGAGCAGAGCCTTGAGAAATTAGGTGTAGAGAGACATA 616
Query 614 GCAAATATGATGTTGAGAGAATGAATCAGGACGTCTTCGAGGCCAAGATTATGAATTGGA 673
||||| ||| |||| |||||||||| ||||| |||| || |||||||| ||||||||
Sbjct 617 GCAAAGATGCTGTTCAGAGAATGAAGGAGGACATCTTAGATGCCAAGATGCGGAATTGGA 676
Query 674 TCCATTACATTCGAATATCTGTGAAACTGTTATTTGCTGCGGAGAAGGAAATCTGCCACC 733
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 677 TCCATTACATGCGAATATCTGTGAAACTGTTATTTGCTGCGGAAAAGGAAATCTGCAACC 736
Query 734 AAATACTTGATGGTGTTGAGCCATTTAGAGATCAATCTTTTGCTGAAATCACTACTATTA 793
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 737 AAATACTTGATGGTGTTGAGCCACTTAGAGATCAGTCTTTTGCTGAAATCACTACTATTA 796
Query 794 GTTTTGGTATGCTTCTTAGTTTCGGATATGCTATCGCTATCAGCAGGAGATCGCCGGAAA 853
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 797 GTTTTGATATGCTTCTTAGTTTCGGATATGCAATCGCTATCAGCAGGAGATCGCCGGAAA 856
Query 854 AAGTGTTTGTTATCTTAGATATGTATGAGATAATGATAGAGCTTCAACCAGAGTTTGAGT 913
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 AACTGTTTGTTATCTTAGATATGTATGAGATAATGATAGAGCTTCAACCAGAGTTTGAGT 916
Query 914 TGATCTTTGGAAGCAAACCTTGTACTGAGATGAAAGAAGATGCACTGAATCTGACAAAGC 973
|||||||||||||| |||||||| | |||||||||||||||||| |||||||||||||||
Sbjct 917 TGATCTTTGGAAGCCAACCTTGTTCCGAGATGAAAGAAGATGCATTGAATCTGACAAAGC 976
Query 974 TATTAGCTCAAACTGTGAAAGAAACTATTGCTGATTTCGAAGTTGCTATTGAAATGGATG 1033
|||||||||| || |||||||||||||||| ||||||||||| ||| ||||||||||||
Sbjct 977 TATTAGCTCAGACAGTGAAAGAAACTATTGTTGATTTCGAAGACGCTGTTGAAATGGATG 1036
Query 1034 CGACTGAAACCGTTGTTATGGATGGATCCGTACATGCGCTAACTAGCTACGTTGCA-AGA 1092
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1037 CGACTGAAACCGTTGTTATGGATGGATCCGTACATGCGCTAACTAGCTACGTTG-AGAGA 1095
Query 1093 TACGTCAAGTTCTTGTTCGATTACGAACCGACGTTGAGGCAACTTTTTCAAGAGTTTAAT 1152
||||||| || ||||||||||||| || ||||||||||||||||| | ||
Sbjct 1096 TACGTCACGTACTTGTTCGATTACAAATCGACGTTGAGGCAACTT---C-----TT---- 1143
Query 1153 AGTAATGATCCTGATACCAAGCTTAAATCCGTGATGACGGGTATCATGAGGGCTTTAAGG 1212
|||||||||||||| ||||||| | | |||||||||||||||||||||| |
Sbjct 1144 ---------CCTGATACCAAGCTGAAATCCGCGTTAACGGGTATCATGAGGGCTTTAATG 1194
Query 1213 AACAATCTGGATGGTAAATCTAGACAGTTCGAAGATGCAGCATTAACTCAACTATTCTTA 1272
|||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||
Sbjct 1195 AACAATCTGGATGGTAAATCCAGACAGTACGAAGATGCAGCATTATCTCAACTATTCTTA 1254
Query 1273 ATGAATAATGTGTATTACATTGTAAGAAATTTCAGAAGGGAAGAAGCAAAGAATTTTTTG 1332
|||||||||||||||||||| || ||| |||| |||||||||||||||||| |||| |||
Sbjct 1255 ATGAATAATGTGTATTACATAGTGAGACATTTTAGAAGGGAAGAAGCAAAGGATTTGTTG 1314
Query 1333 GGTGATGATTTGGTTCAAACACATAGAAGAATCGTACAACAACACGCAAAACAGTACCAG 1392
|||||||||| ||||||||||||| |||||||| || ||||||||||||| |||||||||
Sbjct 1315 GGTGATGATTGGGTTCAAACACATGGAAGAATCATAAAACAACACGCAAATCAGTACCAG 1374
Query 1393 ACAATTTCCTGGAATAAGATTTTACAGTGTATCACGGTTCAGTCGAGTAAGAGCGGTCTG 1452
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 ACAGTTTCTTGGAATAAGATTTTACAGTGTATCACGGTTCAGTCGAGTAAGAGCGGTCTG 1434
Query 1453 ATAAAGAATGAAAGTATaaaaaaaaCTTTAGTAAAAGAAAAATTCAAGACTTTCAATTCT 1512
|||||||| ||||||||| |||||| |||||||||||||||||||||||||| ||||||
Sbjct 1435 ATAAAGAACAAAAGTATAACAAAAACATTAGTAAAAGAAAAATTCAAGACTTTTAATTCT 1494
Query 1513 CAATTCGAAGAGCTTCACCAGAGACAATGCCAATGGTCCGTTTCGGACGTTGAGCTGCGT 1572
||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||
Sbjct 1495 CAATTCGAAGAGCTTCACCAGAGACAATGCCAATGGTTAGTTCCGGACGTTGAGATGCGT 1554
Query 1573 GAATCTCTCAGGCTTGCTATTGCAGAGGTTCTTTTACCTGCCTACGGATCGTTTCTCAAA 1632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GAATCTCTCAGGCTTGCTATTGCAGAGGTTCTTTTACCTGCCTACGGATCGTTTCTCAAA 1614
Query 1633 CGTTTCGGGCCGATGATTGAGAGTGGTAAGAACTCACAGAAGTATATAAGGTTCACTCCT 1692
| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1615 CATTTCGGGCCGATGATAGAGAGTGGTAAGAACTCACAGACGTATATAAGGTTCACTACT 1674
Query 1693 GAGGACCTTGAGCGAATGCTTAACGATTTCTTCCAAGGAAAAAACTTGGATGTGA 1747
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1675 GAGGACCTTGAGCGAATGCTTAACGATTTCTTCGAAGGAAAAAACTTGGA-GTGA 1728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66086575075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5