BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52360.1
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495305 jgi|Araly1|495305|fgenesh2_kg.8__1121__AT5G52360.1 1136 0.0
Ahg918780 jgi|Araly1|918780|scaffold_100061.1 257 7e-68
> Ahg495305 jgi|Araly1|495305|fgenesh2_kg.8__1121__AT5G52360.1
Length=749
Score = 1136 bits (615), Expect = 0.0
Identities = 712/756 (94%), Gaps = 18/756 (2%)
Strand=Plus/Plus
Query 1 CTCTTTTTCTTCATTCTTCATC-TCTCGTCCCACAAAAGAGGACAAAAAACCAAATAACG 59
|||||||||||||||||||||| | || |||||||||||||||| ||||| |||| || |
Sbjct 1 CTCTTTTTCTTCATTCTTCATCATATCCTCCCACAAAAGAGGACTAAAAA-CAAA-AA-G 57
Query 60 -AGAAGTCCCATTTCTCTTTGTTGTCTTAGGTGTTACCTTCATCAACCAAACGCAATGGC 118
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 58 AAGAAGTCCCATTTCTCTTTGTTGTCTTAGGTTTTACCTTCATCAACCAAACGCAATGGC 117
Query 119 GAACGCGGCGTCGGGGATGGCGGTGGAGGACGAGTGTAAGCTGAAGTTTTTGGAGCTAAA 178
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 118 GAACGCGGCCTCGGGGATGGCGGTGGAGGACGAATGTAAGCTGAAGTTTTTGGAGCTAAA 177
Query 179 AGCGAAGAGAAACTATAGGTTCATAATATTCAGGATAGATGGACAACAAGTGGTGGTAGA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AGCGAAGAGAAACTATAGGTTCATAATATTCAGGATAGATGGACAACAAGTGGTGGTAGA 237
Query 239 AAAGCTGGGAAGCCCCCAAGAGAACTACGACGATTTCACCAATTACCTACCGCCAAATGA 298
|||||||||||||||| | |||||||||||||||||| |||||| |||||||||||||||
Sbjct 238 AAAGCTGGGAAGCCCCGAGGAGAACTACGACGATTTCTCCAATTCCCTACCGCCAAATGA 297
Query 299 ATGCCGCTACGCCGTTTATGACTTCGACTTCACCACTGCTGAGAA-TATCCAGAAGAGCA 357
|||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 298 ATGCCGCTACGCTGTTTATGACTTCGACTTCACCACTGCTGAGAACTG-CCAGAAGAGCA 356
Query 358 AGATCTTCTTCATAGCATGGTCACCGGATTCATCTAGAGTAAGGATGAAGATGGTGTATG 417
||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 357 AGATCTTCTTCATCGCGTGGTGACCGGATTCATCTAGAGTAAGGATGAAGATGGTGTATG 416
Query 418 CGAGCTCAAAGGACAGGTTCAAGAGGGAATTGGATGGTATTCAGGTGGAGTTACAAGCCA 477
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 417 CGAGCTCAAAGGACAGGTTCAAGAGAGAATTGGATGGTATTCAGGTGGAGTTACAAGCCA 476
Query 478 CTGACCCGAGCGAGATGAGTCTCGACATCATCAAAAGTCGAGCTCTCTAGATCTCCTTGC 537
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 477 CTGACCCGAGCGAGATGAGTCTCGACATCATCAAAAGTCGAGCTCTCTAGACCTCCATGC 536
Query 538 TTTTCTAATTATATATCCATAATCATTGTCATTCAAACAATTTCCTCATCTTATGTAACT 597
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 537 TTTTCTAATTACATATCCATAATCATCGTCATTCAAACAATTTCCTCATCTTATGTAACT 596
Query 598 TTCGATCTTGGTTTCATTCATTCTTGTTCTTGACTGtttttttCTATTTTATTTACATTT 657
||||||||||||||||||||||||||||||||| | ||||||| | |||||||||||| |
Sbjct 597 TTCGATCTTGGTTTCATTCATTCTTGTTCTTGATTATTTTTTTAT-TTTTATTTACATAT 655
Query 658 TAAATTGACATGGGTTTTATACTTT-GCAAACCATGTAGTT--T--CTCGTGTAATAGCT 712
||||||||| ||||||||||||||| ||||||||||||||| | ||||||||||||||
Sbjct 656 TAAATTGACGTGGGTTTTATACTTTTGCAAACCATGTAGTTAATTTCTCGTGTAATAGCT 715
Query 713 CA---CTTTCGTTGAAAAAATAAAGATATATCTTTT 745
| |||||||||||||| ||||||||||| ||||
Sbjct 716 GAATACTTTCGTTGAAAAA-TAAAGATATAT-TTTT 749
> Ahg918780 jgi|Araly1|918780|scaffold_100061.1
Length=553
Score = 257 bits (139), Expect = 7e-68
Identities = 327/415 (79%), Gaps = 24/415 (6%)
Strand=Plus/Plus
Query 112 CAATGGCGAACGCGGCGTCGGGGATGGC-GGTGGAG-GACGAGTGTAAGCTGAAGTTTTT 169
||||||| || | ||||| ||||| || || || || || || ||||| ||||| ||
Sbjct 22 CAATGGCTAATTCAGCGTCTGGGAT-GCACGT-TAGCGATGACTGCAAGCTCAAGTTCTT 79
Query 170 GGAGCTAAAAGCGAAGAGAAACTATAGGTTCATAATATTC---A-GGAT-AGATGG-ACA 223
|||| | ||||| ||||| |||||||||||||| | ||| | ||| ||| || ||
Sbjct 80 GGAGTTGAAAGCAAAGAGGAACTATAGGTTCATTGTGTTCAAAATTGATGAGAAGGCTCA 139
Query 224 ACAAGTGGTGGTAGAAAAGC-TGGGAAGCCCCCAAGAGAAC-TACGACGATTTCACCA-A 280
||||| || | || |||| |||||| || |||| ||| |||||||||||||||| |
Sbjct 140 GCAAGTTATGATTGACAAGCTTGGGAA-TCCAGAAGA-AACTTACGACGATTTCACCAGA 197
Query 281 T-TACCTACCGCCA-AATGAATGCCGCTACGCCGTTTATGACTTCGACTTCACCACTGCT 338
| || | || | | | || ||||| || || || |||||||| || ||||||||| ||
Sbjct 198 TCTA--TTCC-CGAGGACGAGTGCCGATATGCTGTCTATGACTTTGATTTCACCACTCCT 254
Query 339 GAGAATAT-CCAGAAGAGCAAGATCTTCTTCATAGCATGGTCACCGGATTCATCTAGAGT 397
||||| | |||||||||||| ||||| ||||| ||||||||||| ||| |||| |||||
Sbjct 255 GAGAA-CTGCCAGAAGAGCAAAATCTTTTTCATCGCATGGTCACCTGATACATCAAGAGT 313
Query 398 AAGGATG-AAGATGGTGTATGCGAGCTCAAAGGACAGGTTCAAGAGGGAATTGGATGGTA 456
| || | |||||| ||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 314 GA-GAAGTAAGATGTTGTATGCAAGCTCAAAGGACAGGTTCAAGAGGGAATTGGATGGGA 372
Query 457 TTCAGGTGGAGTTACAAGCCACTGACCCGAGCGAGATGAGTCTCGACATCATCAA 511
|||| || || || ||||| || || || ||||||||||| ||||||||||||||
Sbjct 373 TTCAAGTTGAATTGCAAGCAACAGATCCTAGCGAGATGAGCCTCGACATCATCAA 427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27639114825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5