BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G52370.1 Length=793 Score E Sequences producing significant alignments: (Bits) Value Ahg496025 jgi|Araly1|496025|fgenesh2_kg.8__1841__AT5G52370.1 1057 0.0 > Ahg496025 jgi|Araly1|496025|fgenesh2_kg.8__1841__AT5G52370.1 Length=792 Score = 1057 bits (572), Expect = 0.0 Identities = 734/806 (91%), Gaps = 36/806 (4%) Strand=Plus/Plus Query 10 CTCCTCAACCTCAGTCGCCGATCTTCAACAGTGGCTGAAACTTgagagagagagagagag 69 ||| ||||||||||||||||||||||||||||||||| ||| | ||||||||||||| Sbjct 1 CTCTTCAACCTCAGTCGCCGATCTTCAACAGTGGCTGCAAC---A-AGAGAGAGAGAGA- 55 Query 70 gaagagagCGACACTATGGCGATGACACTTATTAACAGAGCAATCTCTAGAACCGAAACC 129 | ||||| || || ||||||||||| ||||| || |||||||||||||||||||||||| Sbjct 56 G-AGAGA--GATACAATGGCGATGACTCTTATGAAGAGAGCAATCTCTAGAACCGAAACC 112 Query 130 GTTGGTGCTTTCAGACTCTCGCTTAATCTCTTAAGAAATTTCTCTGCGGCGCCGGCGAGT 189 || ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 113 GTCGGTGCTTTCAGACTCTCGCTTAATCTCCTAAGGAATTTCTCTGCGGCGCCGGCGAGT 172 Query 190 GAAAACCCTAGCTCCGATTCG-AGTAAACCGAAACGAAGAAAGAAGAAGAACTTAATCGA 248 ||||||||||||||||||||| || ||||| |||||||||||||||||||| |||||||| Sbjct 173 GAAAACCCTAGCTCCGATTCGAAG-AAACCCAAACGAAGAAAGAAGAAGAATTTAATCGA 231 Query 249 AGTTGCTCAGTTCTTACCTAATTGGGGAATCGGATACCATATGGCTAAAGCTCATTGGAA 308 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 232 AGTCGCTCAGTTCTTACCTAATTGGGGAATCGGATACCATATGGCTAAAGCTCACTGGAA 291 Query 309 TGGAATCTCTTATGAAATCACTAAGATCAATCTCTATAAGGATGGTAGACATGGAAAAGC 368 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 292 TGGAATCTCTTATGAAATCACTAAGATCAATCTCTACAAGGATGGTAGACATGGAAAAGC 351 Query 369 TTGGGGAATTGTTCACAAAGATGGATTGCGAGCTGCAGAAGCTCCAAAGAAGATAAGCGG 428 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 352 TTGGGGAATTGTTCACAAAGATGGATTGCGAGCTGCGGAAGCTCCAAAGAAGATAAGCGG 411 Query 429 AGTTCACAAACGGTGTTGGAAGTATATCCCAAACCTGTCAAAGACTGCTCCTGCTACAAC 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 412 AGTTCACAAACGGTGTTGGAAGTATATCCCAAACCTGTCAAAGACTGCTCCTGCAACAAA 471 Query 489 CTCTGC------T-C--ATGTCCAAGCTGCCTGATCTGTTGTGGGTACTTGTTGATCA-A 538 |||||| | | ||||||||||||||||| ||||||||||||||| | || | | Sbjct 472 CTCTGCAACCGCTGCTGATGTCCAAGCTGCCTGAACTGTTGTGGGTACTTCTCCAT-ATA 530 Query 539 TCTGTTTGCGCTTTCTTTT-ATTGAGAAGAAGATACAGTTGTTGTGACTTGATAGTTTCT 597 |||||||||| |||||||| |||| | ||||||||||||||||||||||||||| |||| Sbjct 531 TCTGTTTGCGGTTTCTTTTTATTG-G--GAAGATACAGTTGTTGTGACTTGATAGCTTCT 587 Query 598 TTGAATTCGTTGATAGCTTTGTAGGAAAT---C--TA--C--GGATGATGATCTGTTGTT 648 |||||||||| ||||||| |||||||||| | || | ||||||||||| |||||| Sbjct 588 TTGAATTCGTCGATAGCTGTGTAGGAAATGATCCATAATCTCGGATGATGATCGGTTGTT 647 Query 649 CCTTCTTCTTGTTAAGACTTTACATTTCCTGAGTTATGATTTTG-TGGGGTTAGCTACTA 707 | |||||||||||||||||||||| ||| |||||| ||||||| |||| || ||||||| Sbjct 648 CGTTCTTCTTGTTAAGACTTTACACTTCTTGAGTTG-GATTTTGCTGGGTTTTGCTACTA 706 Query 708 TTACGTATGAACTTGATTTGTAGGAGGTCTTCTGGTTTTAAACATGTAATAAACGACCTC 767 ||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 707 TTAAGTATGAACTTGTTTTGTAGGAGATCTTCTGGTTTTAAACATGTAATAAACGACCTC 766 Query 768 AATTACGAGTGGCAGGTTTTAGTTTC 793 |||||||||||||||||||||||||| Sbjct 767 AATTACGAGTGGCAGGTTTTAGTTTC 792 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29278400256 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5