BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52370.1
Length=793
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496025 jgi|Araly1|496025|fgenesh2_kg.8__1841__AT5G52370.1 1057 0.0
> Ahg496025 jgi|Araly1|496025|fgenesh2_kg.8__1841__AT5G52370.1
Length=792
Score = 1057 bits (572), Expect = 0.0
Identities = 734/806 (91%), Gaps = 36/806 (4%)
Strand=Plus/Plus
Query 10 CTCCTCAACCTCAGTCGCCGATCTTCAACAGTGGCTGAAACTTgagagagagagagagag 69
||| ||||||||||||||||||||||||||||||||| ||| | |||||||||||||
Sbjct 1 CTCTTCAACCTCAGTCGCCGATCTTCAACAGTGGCTGCAAC---A-AGAGAGAGAGAGA- 55
Query 70 gaagagagCGACACTATGGCGATGACACTTATTAACAGAGCAATCTCTAGAACCGAAACC 129
| ||||| || || ||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 56 G-AGAGA--GATACAATGGCGATGACTCTTATGAAGAGAGCAATCTCTAGAACCGAAACC 112
Query 130 GTTGGTGCTTTCAGACTCTCGCTTAATCTCTTAAGAAATTTCTCTGCGGCGCCGGCGAGT 189
|| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 113 GTCGGTGCTTTCAGACTCTCGCTTAATCTCCTAAGGAATTTCTCTGCGGCGCCGGCGAGT 172
Query 190 GAAAACCCTAGCTCCGATTCG-AGTAAACCGAAACGAAGAAAGAAGAAGAACTTAATCGA 248
||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||||
Sbjct 173 GAAAACCCTAGCTCCGATTCGAAG-AAACCCAAACGAAGAAAGAAGAAGAATTTAATCGA 231
Query 249 AGTTGCTCAGTTCTTACCTAATTGGGGAATCGGATACCATATGGCTAAAGCTCATTGGAA 308
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 232 AGTCGCTCAGTTCTTACCTAATTGGGGAATCGGATACCATATGGCTAAAGCTCACTGGAA 291
Query 309 TGGAATCTCTTATGAAATCACTAAGATCAATCTCTATAAGGATGGTAGACATGGAAAAGC 368
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 292 TGGAATCTCTTATGAAATCACTAAGATCAATCTCTACAAGGATGGTAGACATGGAAAAGC 351
Query 369 TTGGGGAATTGTTCACAAAGATGGATTGCGAGCTGCAGAAGCTCCAAAGAAGATAAGCGG 428
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 352 TTGGGGAATTGTTCACAAAGATGGATTGCGAGCTGCGGAAGCTCCAAAGAAGATAAGCGG 411
Query 429 AGTTCACAAACGGTGTTGGAAGTATATCCCAAACCTGTCAAAGACTGCTCCTGCTACAAC 488
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 412 AGTTCACAAACGGTGTTGGAAGTATATCCCAAACCTGTCAAAGACTGCTCCTGCAACAAA 471
Query 489 CTCTGC------T-C--ATGTCCAAGCTGCCTGATCTGTTGTGGGTACTTGTTGATCA-A 538
|||||| | | ||||||||||||||||| ||||||||||||||| | || | |
Sbjct 472 CTCTGCAACCGCTGCTGATGTCCAAGCTGCCTGAACTGTTGTGGGTACTTCTCCAT-ATA 530
Query 539 TCTGTTTGCGCTTTCTTTT-ATTGAGAAGAAGATACAGTTGTTGTGACTTGATAGTTTCT 597
|||||||||| |||||||| |||| | ||||||||||||||||||||||||||| ||||
Sbjct 531 TCTGTTTGCGGTTTCTTTTTATTG-G--GAAGATACAGTTGTTGTGACTTGATAGCTTCT 587
Query 598 TTGAATTCGTTGATAGCTTTGTAGGAAAT---C--TA--C--GGATGATGATCTGTTGTT 648
|||||||||| ||||||| |||||||||| | || | ||||||||||| ||||||
Sbjct 588 TTGAATTCGTCGATAGCTGTGTAGGAAATGATCCATAATCTCGGATGATGATCGGTTGTT 647
Query 649 CCTTCTTCTTGTTAAGACTTTACATTTCCTGAGTTATGATTTTG-TGGGGTTAGCTACTA 707
| |||||||||||||||||||||| ||| |||||| ||||||| |||| || |||||||
Sbjct 648 CGTTCTTCTTGTTAAGACTTTACACTTCTTGAGTTG-GATTTTGCTGGGTTTTGCTACTA 706
Query 708 TTACGTATGAACTTGATTTGTAGGAGGTCTTCTGGTTTTAAACATGTAATAAACGACCTC 767
||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 707 TTAAGTATGAACTTGTTTTGTAGGAGATCTTCTGGTTTTAAACATGTAATAAACGACCTC 766
Query 768 AATTACGAGTGGCAGGTTTTAGTTTC 793
||||||||||||||||||||||||||
Sbjct 767 AATTACGAGTGGCAGGTTTTAGTTTC 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29278400256
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5