BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52380.1
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495306 jgi|Araly1|495306|fgenesh2_kg.8__1122__AT5G52380.1 1493 0.0
> Ahg495306 jgi|Araly1|495306|fgenesh2_kg.8__1122__AT5G52380.1
Length=1012
Score = 1493 bits (808), Expect = 0.0
Identities = 903/948 (95%), Gaps = 10/948 (1%)
Strand=Plus/Plus
Query 4 CAAACAAACTTGTGTCTTC--C-TCGTC-TCACTGCCTCCACCGCCGCCGGCGAAATCAA 59
|||| |||||||||||||| | ||||| |||||||||||| ||||||||||||||||||
Sbjct 1 CAAAGAAACTTGTGTCTTCTTCTTCGTCTTCACTGCCTCCATCGCCGCCGGCGAAATCAA 60
Query 60 TCGTGTCTTTCTCT-AATTACAGTAGTCAACAATGGTGAACCAAAGGAGAAGACTTGCGC 118
|| || ||||||| || |||||| ||| || ||||||||||||||| ||||||||||||
Sbjct 61 TC--GTATTTCTCTGAA-TACAGTGGTCGACCATGGTGAACCAAAGGCGAAGACTTGCGC 117
Query 119 AGAAGCGATACAAGGAAGCTAATCCAGAGCTGTTTCCAAAAGCAGAACCAACGCCACCAA 178
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 118 AGAAGAGATACAAGGAAGCTAATCCAGAGCTGTTTCCAAAAGCAGAACCAACACCACCAA 177
Query 179 AGGACCCTAATaagaagaagaagaagaaaagcttgttcaagaaaaagaaaCCTGGATCTT 238
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 178 AGGACCCTAATAAGAAGAAGAAGAAGAAGAGCTTGTTCAAGAAAAAGAAACCTGGATCTT 237
Query 239 CCACTGATAGACCTCAGAGAACAGGCTCTTCCACAAGACATCCTCTTCGAGTTCCTGGTA 298
||||||||||||||||||||| |||||| || || |||||||||||||||||||||||||
Sbjct 238 CCACTGATAGACCTCAGAGAAAAGGCTCGTCGACGAGACATCCTCTTCGAGTTCCTGGTA 297
Query 299 TGAAACCTGGAGAAGGCTGTTTTATATGTCATTCCAAAACCCATATTGCTAAGCTTTGTC 358
||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||
Sbjct 298 TGAAACCTGGAGAAGGCTGTTTTATCTGCCACTCCAAAACCCATATTGCTAAGCTCTGTC 357
Query 359 CTGAAAAATCTGAGTGGGAGAGAAACAAGATATGCTTGCAATGTAGGAGGAGAGGGCATA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CTGAAAAATCTGAGTGGGAGAGAAACAAGATATGCTTGCAATGTAGGAGGAGAGGGCATA 417
Query 419 GTCTTAAAAACTGCCCTGAAAAGAACAATGAGAGCTCCGAGAAGAAGCTCTGTTACAATT 478
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 418 GTCTTAAAAACTGCCCTGAAAAGAACGATGAGAGCTCCGAGAAGAAGCTCTGTTACAATT 477
Query 479 GTGGAGATACTGGTCATTCACTTTCCCATTGTCCTTACCCTATGGAAGATGGAGGGACCA 538
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 478 GTGGAGATACTGGCCATTCACTTTCCCATTGTCCTTACCCTTTGGAAGATGGAGGGACCA 537
Query 539 AATTTGCAAGTTGTTTCATATGCAAGGGACAAGGGCACATAAGCAAGAACTGTCC-CGAA 597
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| | ||
Sbjct 538 AATTTGCAAGTTGTTTCATTTGCAAAGGACAGGGGCACATAAGCAAGAACTGTCCTC-AA 596
Query 598 AACAAGCATGGAATCTACCCAATGGGCGGGTGTTGTAAAGTGTGCGGGAGTGTGGCGCAT 657
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 597 AACAAGCATGGAATCTACCCAATGGGCGGGTGTTGTAAAGTGTGTGGGAGTGTGGCGCAT 656
Query 658 CTCGTCAAAGACTGTCCTGATAAATTCAACCAAGAGTCAGCCCAACCAAAGAAGACTTCA 717
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CTCGTCAAAGACTGTCCCGATAAATTCAACCAAGAGTCAGCCCAACCAAAGAAGACTTCA 716
Query 718 AGATTTGATGCTACACCAAGAGGAAAGCTCACTAAGTTTAGTGGGGACGATCTTGAAGAC 777
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||
Sbjct 717 AGATTTGATGCTACACCAAGAGGAAAGGTCACTAAGTTAAGTGGGGACGATCTTGAGGAC 776
Query 778 GATTTCACTGAAGAGCCCAAAAGCAGCAAGAAGATCAATACCTCTGATGATTCAGCTCAG 837
|||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||
Sbjct 777 GATTTCACTGAAGAGCCCAAAAGCAGCAAGAAGATCAATATCTCTGATGATTCGGATCAG 836
Query 838 AATAGTGTCGAGGTGAAGAAAAAGAAACAAGGTCCAAAGATTGTCAATTTCGTTGGATGA 897
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AAGAGTGTCGAGGTGAAGAAAAAGAAACAAGGTCCAAAGATTGTCAATTTCGTTGGATGA 896
Query 898 TCACAAGAGGATCGAAAAGGGTCATCAATTTTGTAGGATATATCAAAA 945
||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 897 TCACAAGAGGATCTAAAAGGGTCATCAATTTTGTAGGAAATATCAAAA 944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39647833680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5