BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52390.1
Length=1024
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949794 jgi|Araly1|949794|scaffold_801681.1 870 0.0
Ahg952083 jgi|Araly1|952083|scaffold_36300003.1 800 0.0
> Ahg949794 jgi|Araly1|949794|scaffold_801681.1
Length=621
Score = 870 bits (471), Expect = 0.0
Identities = 579/630 (92%), Gaps = 11/630 (2%)
Strand=Plus/Plus
Query 71 GTCTTCACTTCACATCACAACATGGCTTTGAAGACAGT-TTTCGTAGCTTTTATGATTCT 129
|||| |||| |||||||||||||||||||||||||||| ||| || ||| ||| | ||||
Sbjct 2 GTCTCCACTACACATCACAACATGGCTTTGAAGACAGTCTTT-GTTGCTATTACGCTTCT 60
Query 130 CCTTGCCATCTATTCGCAAACGACGTTTGGGGACGATGTGAAGTGCGAGAATCTGGATGA 189
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 61 CCTTGCCATCTATTCGCAAACGACGCTTGGACACGATGTGAAGTGCGAGAATCTGGATGA 120
Query 190 AAACACGTGTGCCTTCGCGGTCTCGTCCACTGGAAAACGTTGCGTTTTGGAGAAGAGCAT 249
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 AGACACGTGTGCATTCGCGGTCTCGTCCACTGGAAAACGTTGCGTTTTGGAGAAGAGCGT 180
Query 250 GAAGAGGAGCGGGATCGAGGTGTACACATGTCGATCATCGGAGATAGAAGCTAACAAGGT 309
|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 GAGGAGGAGCGGGATCGAGGTGTACACATGTCGATCATCGGAGATAGAAGCGGACAAGGT 240
Query 310 CACAAACATTATTGAATCGGACGAGTGCATTAAAGCGTGTGGTCTAGACCGGAAAGCTTT 369
||||||||| |||||||| |||||||||||||||||||||||||||||| ||||| ||||
Sbjct 241 CACAAACATAATTGAATCAGACGAGTGCATTAAAGCGTGTGGTCTAGACAGGAAATCTTT 300
Query 370 AGGTATATCTTCGGACGCATTGTTGGAATCTCAGTTCACACATAAACTCTGCTCGGTTAA 429
||||||||||||||||||||||||||||| | ||| ||||| ||||| |||||||||||
Sbjct 301 GGGTATATCTTCGGACGCATTGTTGGAATCCCGGTTTACACAGAAACTGTGCTCGGTTAA 360
Query 430 ATGCTTAAACCAATGTCCTAACGTAGTCGATCTCTACTTCAACCTTGCTGCTGGTGAAGG 489
||||||||||||||| |||||||| |||||||||| |||||||||||||||||| |||||
Sbjct 361 ATGCTTAAACCAATGCCCTAACGTCGTCGATCTCTTCTTCAACCTTGCTGCTGGCGAAGG 420
Query 490 AGTGTATTTACCAAAGCTATGTGAATCACAAGAAGGGAAGTCAAGAAGAGCAATGTCGGA 549
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGTGTATTTGCCAAAGCTATGTGAATCACAAGAAGGGAAGTCAAGAAGAGCAATGTCGGA 480
Query 550 AATTAGGAGCTCGGGAATTGCAATGGACACTCTTGCACCGGTTGGACCAGTCATGTTGGG 609
|||||||||||||||||||| |||||||||||| | |||||||||||| || | ||||||
Sbjct 481 AATTAGGAGCTCGGGAATTGTAATGGACACTCTCGGACCGGTTGGACCGGTTAGGTTGGG 540
Query 610 CGAGATAGCACCTGAGCCGGCTACTTCAATGGACAACATGCCTTACGTGCCGGCACCTTC 669
|||||| ||||| ||||||||||||||||||||| || | | |||||||||||||
Sbjct 541 CGAGATGGCACCGGAGCCGGCTACTTCAATGGAC--CA--C---A--TGCCGGCACCTTC 591
Query 670 ACCGTATTAATTAAGGCAAGGGAAAATGGA 699
|||||||||||||||| || ||||||||||
Sbjct 592 ACCGTATTAATTAAGGGAACGGAAAATGGA 621
> Ahg952083 jgi|Araly1|952083|scaffold_36300003.1
Length=623
Score = 800 bits (433), Expect = 0.0
Identities = 503/538 (93%), Gaps = 0/538 (0%)
Strand=Plus/Plus
Query 162 ACGATGTGAAGTGCGAGAATCTGGATGAAAACACGTGTGCCTTCGCGGTCTCGTCCACTG 221
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 86 ACGATGTGAAGTGCGAGAATCTGGATGAAGACACGTGTGCATTCGCGGTCTCGTCCACTG 145
Query 222 GAAAACGTTGCGTTTTGGAGAAGAGCATGAAGAGGAGCGGGATCGAGGTGTACACATGTC 281
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 146 GAAAACGTTGCGTTTTGGAGAAGAGCGTGAGGAGGAGCGGGATCGAGGTGTACACATGTC 205
Query 282 GATCATCGGAGATAGAAGCTAACAAGGTCACAAACATTATTGAATCGGACGAGTGCATTA 341
||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||
Sbjct 206 GATCATCGGAGATAGAAGCGGACAAGGTCACAAACATAATTGAATCAGACGAGTGCATTA 265
Query 342 AAGCGTGTGGTCTAGACCGGAAAGCTTTAGGTATATCTTCGGACGCATTGTTGGAATCTC 401
||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| |
Sbjct 266 AAGCGTGTGGTCTAGACAGGAAATCTTTGGGTATATCTTCGGACGCATTGTTGGAATCCC 325
Query 402 AGTTCACACATAAACTCTGCTCGGTTAAATGCTTAAACCAATGTCCTAACGTAGTCGATC 461
||| ||||| |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 326 GGTTTACACAGAAACTCTGCTCGGTTAAATGCTTAAACCAATGCCCTAACGTCGTCGATC 385
Query 462 TCTACTTCAACCTTGCTGCTGGTGAAGGAGTGTATTTACCAAAGCTATGTGAATCACAAG 521
||| ||||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 386 TCTTCTTCAACCTTGCTGCAGGCGAAGGAGTGTATTTGCCAAAGCTATGTGAATCACAAG 445
Query 522 AAGGGAAGTCAAGAAGAGCAATGTCGGAAATTAGGAGCTCGGGAATTGCAATGGACACTC 581
|||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 446 AAGGAAAGTCAAGAAGAGCGATGTCGGAAATTAGGAGCTCGGGAATTGTAATGGACACTC 505
Query 582 TTGCACCGGTTGGACCAGTCATGTTGGGCGAGATAGCACCTGAGCCGGCTACTTCAATGG 641
| |||||||||||| || | |||||||||||| ||||| ||||||||||| |||||||
Sbjct 506 CCGGACCGGTTGGACCGGTTAGGTTGGGCGAGATGGCACCGGAGCCGGCTACATCAATGG 565
Query 642 ACAACATGCCTTACGTGCCGGCACCTTCACCGTATTAATTAAGGCAAGGGAAAATGGA 699
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 566 ACCACATGCCTTACGTGCCGGCACCTTCACCGTATTAATTAAGGCAACGGAAAATGGA 623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38084794083
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5