BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52400.1
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331608 jgi|Araly1|331608|fgenesh1_pm.C_scaffold_8000951 1796 0.0
> Ahg331608 jgi|Araly1|331608|fgenesh1_pm.C_scaffold_8000951
Length=1593
Score = 1796 bits (972), Expect = 0.0
Identities = 1082/1136 (95%), Gaps = 4/1136 (0%)
Strand=Plus/Plus
Query 1 ATGGAGTTTTTTGAGATGTCTCGAGTTTGGTACATATTCTTCAAAGTTTTCGTCGTAGTT 60
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGGAGTTTCTTGAGATGTCTCGAGTTTGGTACATAGTCTTCAAAGTTTTCGTCGTAGTT 60
Query 61 ATTTGCCTCATGTTCTTGAAGCTCTTTCTGCGTTGTTGGATATGGCCAGTTCGAGCTCAA 120
|||||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||
Sbjct 61 CTTTGCCTCATGTTCTTGAAGCTCTTTGTGCGTTGTTGGATTTTGCCGGTTCGAGCTCAA 120
Query 121 AAGAAGCTTAGAGGAAACGGATTTGTT-GGTCCAGCTCCTAGTTTTCCATTT-GGAAACC 178
||||||||||||| ||| |||||| || |||||||||||||||||||| ||| |||||||
Sbjct 121 AAGAAGCTTAGAGAAAATGGATTT-TTCGGTCCAGCTCCTAGTTTTCC-TTTAGGAAACC 178
Query 179 TTAATGACATGAAGAAACTGAAAATGGCCTCGGTTGTGGTGGATAATAGCAAATCTTCCA 238
|||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 179 TTAATGACATGAAGAAGCTGAAGATGGCCTCGGTTATGGTGGATAATAGCAAATCTTCCA 238
Query 239 CCATCATCAATCATGACATACACTCTATTGCACTTCCACATTTCGCTCGGTGGCAACAAG 298
|||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 239 CCATTATCAACCATGACATACACTCCATTGCACTACCACATTTCGCTCGGTGGCAACAAG 298
Query 299 AATACGGGAAAGTATTTGTGTACTGGCTAGGGATAGAGCCGTTCGTGTACGTGGCCGATC 358
||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||
Sbjct 299 AATACGGGAAAGTATTTGTGTACTGGCTAGGAATAGAGCCATTCGTTTACGTGGCGGATC 358
Query 359 CTGAATTCTTGAGTGTTATGTCGAAAGGGGTATTGGGGAAGAGTTGGGGAAAACCAAATG 418
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 359 CTGAATTCTTGAGTGTTATGTCGAAAGGTGTATTGGGAAAGAGTTGGGGAAAACCAAATG 418
Query 419 TTTTTAAGAAAGACAGAGAGCCAATGTTTGGTACCGGTTTGGTTATGGTCGAAGGAGATG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 419 TTTTTAAGAAAGACAGAGAGCCAATGTTTGGTACCGGTTTGGTTATGGTCGAAGGGGATG 478
Query 479 ATTGGACACGACATCGCCACATCATCACTCCTGCATTTGCCCCTCTTAATCTTAAGGTTA 538
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 479 ATTGGACACGACATCGCCACATCATCACCCCTGCATTTGCCCCTCTTAATCTTAAGGTTA 538
Query 539 TGACAAATATGATGGTGGAATCAGTCTCCAATATGTTGGACCGATGGGGCATACAAATAA 598
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 539 TGACAAATATGATGGTGGAATCAGTCTCCAACATGTTGGACCGATGGGACATACAAATAA 598
Query 599 ACTCGGGTAATCCCGAATTCGACATGGAGAGCGAGATCATAGGAACAGCCGGTGAGATTA 658
||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||| |
Sbjct 599 ACTCGGGTAATCCCGAATTCGACATGGAGAGCGAGGTTATAGGAACAGCTGGTGAGATAA 658
Query 659 TCGCCAAGACAAGCTTCGGTGTCACGGGAGAAAATGGAACTCAAGTCCTCAAAAACCTAA 718
| ||||||||||||||||| ||||| |||||||| || |||||||||||||||||||||
Sbjct 659 TAGCCAAGACAAGCTTCGGAGTCACCGGAGAAAACGGCACTCAAGTCCTCAAAAACCTAC 718
Query 719 GAGCCGTGCAATTCGCTCTCTTCAACTCAAATCGCTACGTAGGCGTGCCATTCAGCAACA 778
|||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||
Sbjct 719 GAGCCGTGCAATTCGCTCTCTTCAACTCGAATCGCTATGTAGGCGTACCGTTCAGCAACA 778
Query 779 TTTTGAGTTACAAGCAAACCGTTAAAGCGAAGGGGCTAGGTCATGAGATAGATGGTCTCC 838
||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||
Sbjct 779 TTTTGAGTTACAAGCAAACCGTTAAAGCGAAGGAGCTAGGTCAAGAGATAGATAGTCTCC 838
Query 839 TTTTGTCGTTCATAAACAAACGGAAGATATCTTTGGCTGAAGGAGATGACCAAGGCCACG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTTTGTCGTTCATAAACAAACGGAAGATATCTTTGGCTGAAGGAGATGACCAAGGCCACG 898
Query 899 ATCTTCTCGGAATGTTGCTTAAGGCCGATCAGAAAGGGAATTTTACGGCGAAAGAGCTTG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATCTTCTCGGAATGTTGCTTAAGGCCGATCAGAAAGGGAATTTTACGGCGAAAGAGCTTG 958
Query 959 TGGACGAATGCAAGACATTCTTCTTCGCTGGCCACGAGACAACGGCTTTAGCACTAACGT 1018
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGGACGAATGCAAAACATTCTTCTTCGCTGGCCACGAGACAACGGCTTTAGCACTAACGT 1018
Query 1019 GGACGTTTATGCTTCTTGCGATCCATCCCGAGTGGCAAGACACGATCAGGGAAGAGATTA 1078
||||||| |||||||| || |||||||||||||||||||||||| ||||| |||||||||
Sbjct 1019 GGACGTTCATGCTTCTGGCAATCCATCCCGAGTGGCAAGACACGCTCAGGCAAGAGATTA 1078
Query 1079 GAGAAGTCATCGGAGATTCCAAGATTGAGTATAACAAACTTGCCGGTCTAAAAAAG 1134
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GACAAGTCATCGGAGATTCCAAGATTGAGTATAACAAACTTGCCGGTCTAAAAAAG 1134
Score = 660 bits (357), Expect = 0.0
Identities = 403/426 (95%), Gaps = 0/426 (0%)
Strand=Plus/Plus
Query 1135 ATGAGTTGGGTAATGAACGAGGTTCTCCGGCTATATCCACCGGCACCGAACGCACAACGA 1194
||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 1168 ATGAGTTGGGTAATGAACGAGGTTCTCCGGCTATATCCACCAGCGCCTAACGCACAACGT 1227
Query 1195 CAAGCCCGAAATGACATTGAAGTGAACGGACGAGTGATTCCAAACGGAACAAACATTTGG 1254
||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 1228 CAAGCCCGAAAAGACATTGAAGTGAACGGTCGGGTGATTCCTAACGGAACAAACATTTGG 1287
Query 1255 ATTGATGTGGTGGCGATGCACCACGACGTTGAGTTGTGGGGAGATGACGTTAACGAGTTT 1314
|||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1288 ATTGATGTGGTGGCAATGCACCACGACGCTGAGTTGTGGGGAGACGACGTTAACGAGTTT 1347
Query 1315 AAGCCTGAGAGATTCGACGGTAATTTGCACGGTGGTTGTAAGAATAAAATGGGTTACATG 1374
|| || || ||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 1348 AAACCGGAAAGATTCGACGGCAATTTACACGGTGGTTGTAAGAATAAAATGGGTTATATG 1407
Query 1375 CCGTTTGGATTCGGAGGGAGAATGTGTATCGGTCGGAATTTGACCACCATGGAGTACAAG 1434
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1408 CCGTTTGGGTTCGGAGGGAGGATGTGTATCGGTCGGAATTTGACCACCATGGAGTACAAG 1467
Query 1435 ATTGTCTTGTCGTTGGTTTTGTCCCGGTTCGAAATCTCGGTTTCGCCCGGTTATCGCCAT 1494
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1468 ATTGTCTTGTCATTGGTTTTGTCCCGGTTTGAAATCTCGGTTTCACCCGGTTATCGCCAT 1527
Query 1495 TCTCCGACGTATATGCTTTCTCTTAGACCGGGTTACGGTTTGCCTCTAATTATACGACCA 1554
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1528 TCTCCGACGTACATGCTTTCTCTTAGACCGGGTTACGGTTTGCCTCTAATTATACGACCA 1587
Query 1555 CTTTAG 1560
||||||
Sbjct 1588 CTTTAG 1593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58430435830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5