BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G52400.1 Length=1560 Score E Sequences producing significant alignments: (Bits) Value Ahg331608 jgi|Araly1|331608|fgenesh1_pm.C_scaffold_8000951 1796 0.0 > Ahg331608 jgi|Araly1|331608|fgenesh1_pm.C_scaffold_8000951 Length=1593 Score = 1796 bits (972), Expect = 0.0 Identities = 1082/1136 (95%), Gaps = 4/1136 (0%) Strand=Plus/Plus Query 1 ATGGAGTTTTTTGAGATGTCTCGAGTTTGGTACATATTCTTCAAAGTTTTCGTCGTAGTT 60 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1 ATGGAGTTTCTTGAGATGTCTCGAGTTTGGTACATAGTCTTCAAAGTTTTCGTCGTAGTT 60 Query 61 ATTTGCCTCATGTTCTTGAAGCTCTTTCTGCGTTGTTGGATATGGCCAGTTCGAGCTCAA 120 |||||||||||||||||||||||||| ||||||||||||| | ||| |||||||||||| Sbjct 61 CTTTGCCTCATGTTCTTGAAGCTCTTTGTGCGTTGTTGGATTTTGCCGGTTCGAGCTCAA 120 Query 121 AAGAAGCTTAGAGGAAACGGATTTGTT-GGTCCAGCTCCTAGTTTTCCATTT-GGAAACC 178 ||||||||||||| ||| |||||| || |||||||||||||||||||| ||| ||||||| Sbjct 121 AAGAAGCTTAGAGAAAATGGATTT-TTCGGTCCAGCTCCTAGTTTTCC-TTTAGGAAACC 178 Query 179 TTAATGACATGAAGAAACTGAAAATGGCCTCGGTTGTGGTGGATAATAGCAAATCTTCCA 238 |||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||| Sbjct 179 TTAATGACATGAAGAAGCTGAAGATGGCCTCGGTTATGGTGGATAATAGCAAATCTTCCA 238 Query 239 CCATCATCAATCATGACATACACTCTATTGCACTTCCACATTTCGCTCGGTGGCAACAAG 298 |||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 239 CCATTATCAACCATGACATACACTCCATTGCACTACCACATTTCGCTCGGTGGCAACAAG 298 Query 299 AATACGGGAAAGTATTTGTGTACTGGCTAGGGATAGAGCCGTTCGTGTACGTGGCCGATC 358 ||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| |||| Sbjct 299 AATACGGGAAAGTATTTGTGTACTGGCTAGGAATAGAGCCATTCGTTTACGTGGCGGATC 358 Query 359 CTGAATTCTTGAGTGTTATGTCGAAAGGGGTATTGGGGAAGAGTTGGGGAAAACCAAATG 418 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 359 CTGAATTCTTGAGTGTTATGTCGAAAGGTGTATTGGGAAAGAGTTGGGGAAAACCAAATG 418 Query 419 TTTTTAAGAAAGACAGAGAGCCAATGTTTGGTACCGGTTTGGTTATGGTCGAAGGAGATG 478 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 419 TTTTTAAGAAAGACAGAGAGCCAATGTTTGGTACCGGTTTGGTTATGGTCGAAGGGGATG 478 Query 479 ATTGGACACGACATCGCCACATCATCACTCCTGCATTTGCCCCTCTTAATCTTAAGGTTA 538 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 479 ATTGGACACGACATCGCCACATCATCACCCCTGCATTTGCCCCTCTTAATCTTAAGGTTA 538 Query 539 TGACAAATATGATGGTGGAATCAGTCTCCAATATGTTGGACCGATGGGGCATACAAATAA 598 ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct 539 TGACAAATATGATGGTGGAATCAGTCTCCAACATGTTGGACCGATGGGACATACAAATAA 598 Query 599 ACTCGGGTAATCCCGAATTCGACATGGAGAGCGAGATCATAGGAACAGCCGGTGAGATTA 658 ||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||| | Sbjct 599 ACTCGGGTAATCCCGAATTCGACATGGAGAGCGAGGTTATAGGAACAGCTGGTGAGATAA 658 Query 659 TCGCCAAGACAAGCTTCGGTGTCACGGGAGAAAATGGAACTCAAGTCCTCAAAAACCTAA 718 | ||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||| Sbjct 659 TAGCCAAGACAAGCTTCGGAGTCACCGGAGAAAACGGCACTCAAGTCCTCAAAAACCTAC 718 Query 719 GAGCCGTGCAATTCGCTCTCTTCAACTCAAATCGCTACGTAGGCGTGCCATTCAGCAACA 778 |||||||||||||||||||||||||||| |||||||| |||||||| || |||||||||| Sbjct 719 GAGCCGTGCAATTCGCTCTCTTCAACTCGAATCGCTATGTAGGCGTACCGTTCAGCAACA 778 Query 779 TTTTGAGTTACAAGCAAACCGTTAAAGCGAAGGGGCTAGGTCATGAGATAGATGGTCTCC 838 ||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||| Sbjct 779 TTTTGAGTTACAAGCAAACCGTTAAAGCGAAGGAGCTAGGTCAAGAGATAGATAGTCTCC 838 Query 839 TTTTGTCGTTCATAAACAAACGGAAGATATCTTTGGCTGAAGGAGATGACCAAGGCCACG 898 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 TTTTGTCGTTCATAAACAAACGGAAGATATCTTTGGCTGAAGGAGATGACCAAGGCCACG 898 Query 899 ATCTTCTCGGAATGTTGCTTAAGGCCGATCAGAAAGGGAATTTTACGGCGAAAGAGCTTG 958 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 ATCTTCTCGGAATGTTGCTTAAGGCCGATCAGAAAGGGAATTTTACGGCGAAAGAGCTTG 958 Query 959 TGGACGAATGCAAGACATTCTTCTTCGCTGGCCACGAGACAACGGCTTTAGCACTAACGT 1018 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 TGGACGAATGCAAAACATTCTTCTTCGCTGGCCACGAGACAACGGCTTTAGCACTAACGT 1018 Query 1019 GGACGTTTATGCTTCTTGCGATCCATCCCGAGTGGCAAGACACGATCAGGGAAGAGATTA 1078 ||||||| |||||||| || |||||||||||||||||||||||| ||||| ||||||||| Sbjct 1019 GGACGTTCATGCTTCTGGCAATCCATCCCGAGTGGCAAGACACGCTCAGGCAAGAGATTA 1078 Query 1079 GAGAAGTCATCGGAGATTCCAAGATTGAGTATAACAAACTTGCCGGTCTAAAAAAG 1134 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 GACAAGTCATCGGAGATTCCAAGATTGAGTATAACAAACTTGCCGGTCTAAAAAAG 1134 Score = 660 bits (357), Expect = 0.0 Identities = 403/426 (95%), Gaps = 0/426 (0%) Strand=Plus/Plus Query 1135 ATGAGTTGGGTAATGAACGAGGTTCTCCGGCTATATCCACCGGCACCGAACGCACAACGA 1194 ||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| Sbjct 1168 ATGAGTTGGGTAATGAACGAGGTTCTCCGGCTATATCCACCAGCGCCTAACGCACAACGT 1227 Query 1195 CAAGCCCGAAATGACATTGAAGTGAACGGACGAGTGATTCCAAACGGAACAAACATTTGG 1254 ||||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||| Sbjct 1228 CAAGCCCGAAAAGACATTGAAGTGAACGGTCGGGTGATTCCTAACGGAACAAACATTTGG 1287 Query 1255 ATTGATGTGGTGGCGATGCACCACGACGTTGAGTTGTGGGGAGATGACGTTAACGAGTTT 1314 |||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct 1288 ATTGATGTGGTGGCAATGCACCACGACGCTGAGTTGTGGGGAGACGACGTTAACGAGTTT 1347 Query 1315 AAGCCTGAGAGATTCGACGGTAATTTGCACGGTGGTTGTAAGAATAAAATGGGTTACATG 1374 || || || ||||||||||| ||||| ||||||||||||||||||||||||||||| ||| Sbjct 1348 AAACCGGAAAGATTCGACGGCAATTTACACGGTGGTTGTAAGAATAAAATGGGTTATATG 1407 Query 1375 CCGTTTGGATTCGGAGGGAGAATGTGTATCGGTCGGAATTTGACCACCATGGAGTACAAG 1434 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1408 CCGTTTGGGTTCGGAGGGAGGATGTGTATCGGTCGGAATTTGACCACCATGGAGTACAAG 1467 Query 1435 ATTGTCTTGTCGTTGGTTTTGTCCCGGTTCGAAATCTCGGTTTCGCCCGGTTATCGCCAT 1494 ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 1468 ATTGTCTTGTCATTGGTTTTGTCCCGGTTTGAAATCTCGGTTTCACCCGGTTATCGCCAT 1527 Query 1495 TCTCCGACGTATATGCTTTCTCTTAGACCGGGTTACGGTTTGCCTCTAATTATACGACCA 1554 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1528 TCTCCGACGTACATGCTTTCTCTTAGACCGGGTTACGGTTTGCCTCTAATTATACGACCA 1587 Query 1555 CTTTAG 1560 |||||| Sbjct 1588 CTTTAG 1593 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58430435830 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5