BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52410.2
Length=2461
Score E
Sequences producing significant alignments: (Bits) Value
Ahg357483 jgi|Araly1|357483|fgenesh1_pg.C_scaffold_8001270 3181 0.0
> Ahg357483 jgi|Araly1|357483|fgenesh1_pg.C_scaffold_8001270
Length=2250
Score = 3181 bits (1722), Expect = 0.0
Identities = 2107/2287 (92%), Gaps = 50/2287 (2%)
Strand=Plus/Plus
Query 38 ATGGCGACATGGACACCAAGCTCTCTCCAGCTCAGAATTGCCCTAAATCACGGTATCTTC 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATGGCGACATGGACACCAAGCTCTCTCCAGCTCAGAATTGCCCTAAATCACGGTAGCTTC 60
Query 98 AAAGCTCCGGAGAGAGCGAAGATGACCAAGCTCAGTCGTCGTCTCCGTATATCATGCGTC 157
|||||||||| |||||| |||||||| ||||||||||||||| |||| || ||||||||
Sbjct 61 AAAGCTCCGGCGAGAGCAAAGATGACAAAGCTCAGTCGTCGTTTCCGGATGTCATGCGTT 120
Query 158 GCGCAGAACGCAGAGCCAGGTCGCGATTCGGGTGAGAGTAACGGGTCGGATCGTTTTCGT 217
|| ||||||||||| ||| |||||| ||||||||||| ||||||||||||||||||
Sbjct 121 GCTCAGAACGCAGAATTGGGTGGCGATTTTGGTGAGAGTAATGGGTCGGATCGTTTTCGT 180
Query 218 GGGTGGGCTGATTCGGGAGACGATGAGAACA------ATTCTCGCGGTGGCGATTGGTTT 271
||||||||||||||||||||||||||||| | ||||||||||||| |||||||||
Sbjct 181 GGGTGGGCTGATTCGGGAGACGATGAGAATACTGTCGATTCTCGCGGTGGTGATTGGTTT 240
Query 272 AAAGGAACCTTGTTATCTGGAGTTGCTGGAATGGTTTTGTTCGTTGGGCTAACTTACGCA 331
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 241 AAAGGAACCTTGTTATCTGGAGTGGCTGGAATGGTTCTGTTCGTTGGGCTAACTTACGCA 300
Query 332 GCTTTATCTTCCAAACGCAATGTCTTAAGACCAAAAGTAGAAGTGATGGTGACCACAGTT 391
|||||||||| ||| |||||||| ||||||||||||||| |||||||||||||||| |||
Sbjct 301 GCTTTATCTTTCAAGCGCAATGTTTTAAGACCAAAAGTACAAGTGATGGTGACCACGGTT 360
Query 392 ACTAAAAGTTCAATTGATCAAATCAGCACGGATGAGAATGAAGGAAATATTGTGACT-AG 450
||||||||||||| ||||||||||||||||| ||| ||||||||||||||||| | |
Sbjct 361 ACTAAAAGTTCAAGTGATCAAATCAGCACGGGTGATAATGAAGGAAATATTGTCAAGGA- 419
Query 451 TCAAGATAACCAGGAAAGCTATAGAGCGTTCCCTTTTCTGGATGTTAGTTTAGATTCACA 510
||||||||| |||||||||||||||| ||| | | | ||| || | | |||
Sbjct 420 TCAAGATAAGCAGGAAAGCTATAGAGA-TTCTC----C---A-GTT--TT-A--T-CACC 464
Query 511 AGTTTTATCTCCGGATGAAATAGATGTTGC-GTCAAAATCCACGTCTACTAGGAAAG-AC 568
|| || | | ||| ||| ||| ||| || ||| ||||||| || |||| |
Sbjct 465 AG----AT----G-AC-AAA--GAT-TTGGTGTCGAAGTCCGCGTCTACAAGCAAAGTA- 510
Query 569 AATGAGGAGGCGGAG-AAAGCATCGGTAAGCTC-AGCGGAGAGATACACATCATCTACAG 626
||||| |||| ||| |||||||| | ||| || ||| |||| |||||||| ||| | ||
Sbjct 511 AATGATGAGG-GGAACAAAGCATCAGAAAG-TCCAGCTGAGAAATACACATTATCGA-AG 567
Query 627 -AGCTGGATGGAGTAGATACACATACCTCTCAAATCCCAAACGAAAAGCAGAAAGCCCGC 685
|| ||||||||||||||||||||||||||| || |||| || ||||||||||| | ||
Sbjct 568 GAGTTGGATGGAGTAGATACACATACCTCTCTAACCCCATACAAAAAGCAGAAAACTCGT 627
Query 686 CGTTATACAGGAATACCTGCTCCTTCTACAGTTCCACAAGTAGATTCTTTAAAACCTATC 745
|||||||||||| |||||||||||| ||||||||||||||| || || || |||||||
Sbjct 628 AGTTATACAGGAAGACCTGCTCCTTCCACAGTTCCACAAGTAAATCCTGTAGAACCTATA 687
Query 746 TTTCCAACGGTTGTGGATCCAGTTCAAAGTCAAATGTTTGCAGCTTTACAAGCTTTAAAG 805
||||||||||||||||| || |||||||||||||| ||| ||||||||||||||||||||
Sbjct 688 TTTCCAACGGTTGTGGACCCTGTTCAAAGTCAAATATTTTCAGCTTTACAAGCTTTAAAG 747
Query 806 GTTATTGAATCCGATGCTCTGCCTTACGATTTATGTACACGCCGTGAATTCGCTCGTTGG 865
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 748 GTTATTGAATCTGATGCTCTGCCTTACGATTTATGTACACGCCGTGAATTCGCTCGGTGG 807
Query 866 GTGGTTTCTGCAAGCAATACTCTATCGAGGAACTCAGCATCAAAAGTATATCCTGCCATG 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 GTGGTTTCTGCAAGCAATACTCTATCGAGGAACTCAGCATCAAAAGTATATCCTGCCATG 867
Query 926 TATATAGAAAATGTTACTGAACTTGCATTTGATGATATTACACCTGAAGATCCTGATTTT 985
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 TACATAGAGAATGTTACTGAACTTGCATTTGATGATATTACACCTGAAGATCCTGATTTT 927
Query 986 CCATTCATTCAAGGTTTGGCAGAGGCAGGACTTATCTCAAGCAAACTCTCTAACAACAAT 1045
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 928 CCATTCATTCAAGGTTTGGCAGAGGCAGGGCTTATCTCAAGCAAACTCTCTAACCACAAC 987
Query 1046 ATGCCTTCTTCTGAGAGCAGTCGGGTTACGTTCTCCCCAGAAAGTCCTCTAACACGTCAG 1105
||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 988 ATGCCTTGTTCTGAGAGCAGTCGGTTTACGTTCTCCCCAGAAAGTCCTCTAACCCGTCAG 1047
Query 1106 GATCTATTGAGCTGGAAGATGGCTTTGGAATTTCGACAGCTTCCAGAAGCTGATAGCAAG 1165
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1048 GATTTATTGAGCTGGAAGATGGCTTTGGAATTTCGACAGCTCCCAGAAGCTGATAGCAAG 1107
Query 1166 AAATTATACCAACTTTCTGGTTTTCTTGACATTGATAAAATAAACCCAGAAGCATGGCCT 1225
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 AAGTTGTACCAACTTTCTGGTTTTCTTGACATTGATAAAATAAACCCAGAAGCATGGCCT 1167
Query 1226 GCCCTTATAGCTGACCTATCTGCTGGAGAACACGGAATAACAGCACTTTCTTTTGGGCGT 1285
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1168 GCCCTTATAGCTGACTTATCTGCTGGAGAACACGGAATAACAGCACTTGCTTTTGGGCGT 1227
Query 1286 ACCAGATTGTTTCAACC-GTCGAAAGCAGTTACAAAAGCCCAAACAGCTGTGTCTCTTGC 1344
|||||||||||||| || | | ||||||||||||||||||||||||||||||||||||||
Sbjct 1228 ACCAGATTGTTTCAGCCTG-CTAAAGCAGTTACAAAAGCCCAAACAGCTGTGTCTCTTGC 1286
Query 1345 AATTGGTGATGCTTTTGAAGTAGTTGGTGAGGAGCTAGCTCGTATAGAAGCAGAGGCTAT 1404
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1287 AATTGGTGATGCTTTTGAAGTAATTGGTGAGGAGCTAGCTCGTATCGAAGCAGAGGCTAT 1346
Query 1405 GGCCGAAAATGTGGTTTGTGCACATAACGAATTGGTTGCTCAGGTCGAGAAGGATATTAA 1464
||| ||||||||||||| ||||||||||| ||||| ||||||| ||||||||||||||
Sbjct 1347 GGCTGAAAATGTGGTTTCTGCACATAACGCGCTGGTTACTCAGGTTGAGAAGGATATTAA 1406
Query 1465 TGCTAGCTTCGAGAAAGAGCTTTTAAGAGAAAAAGAAATAGTAGATGCAGTGGAGAAATT 1524
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TGCTAGCTTTGAGAAAGAGCTTTTAAGAGAAAAAGAAATAGTAGATGCAGTGGAGAAATT 1466
Query 1525 GGCTGAAGAAGCAAAGTCAGAGCTAGCGAGACTTAGAGTTGAGAAAGAAGAGGAGACTCT 1584
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1467 GGCTGAAGAAGCAAAGTCGGAGCTAGCGAGACTTAGAGTTGAAAAAGAAGAGGAGACTCT 1526
Query 1585 TGCATTGGAGAGAGAACGCACATCGATTGAAACAGAAATGGAGGCTCTTGCAAGGATACG 1644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1527 TGCATTGGAGAGAGAACGCACATCGATTGAAACAGAAATGGAGGCTCTTGCAAGGATACG 1586
Query 1645 AAATGAGCTTGAGGAACAACTTCAAAGCCTTGCGAGTAACAAGGCAGAGATGTCATATGA 1704
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1587 AAATGAGCTTGAGGAACAACTTCAAAGCCTTGCAAGTAACAAGGCAGAGATGTCGTATGA 1646
Query 1705 GAAAGAGAGGTTTGATAGACTTCAAAAGCAAGTGGAGGATGAGAACCAAGAGATACTCCG 1764
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1647 GAAAGAGAGGTTTGATAGACTTCAAAAGCAAGTGGAGGATGAGAACCAAAAGATACTCCG 1706
Query 1765 GTTACAAAATGAGCTTGAAGTTGAAAGGAACGCTTTATCCATTGCCAGGGATTGGGCTAA 1824
||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1707 GTTGCAAAATGAGCTGGAAGTGGAAAGGAACGCTTTATCCATAGCCAGGGATTGGGCTAA 1766
Query 1825 GGATGAAGCGAGAAGAGCAAGAGAACAAGCAAAAGTGCTAGAAGAAGCTAGAGGACGTTG 1884
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1767 GGATGAAGCGAGAAGGGCAAGAGAACAAGCAAAAGTGCTAGAAGAAGCTAGAGGACGTTG 1826
Query 1885 GGAGAAGTATGGCCTAAAAGTGATTGTTGACAGCGACCTCCATGAACAGACAACAAAAAC 1944
||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct 1827 GGAGAAGTATGGCCTAAAAGTGATTGTTGACAGTGATCTCCATGAACAGACAACAA---C 1883
Query 1945 CGAATCTACTTGGCTGAACGCAGGAAAGCAAAATCATGTAGAAGGAACCATGAAAAGAGC 2004
|||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||
Sbjct 1884 CGAATCTACTTGGCTGAACGCAAGAAAACAAAATCCTGTAGAAGGAACCATGAAAAGAGC 1943
Query 2005 TGGAAATCTGATTGCTAAGCTGAAGAAGATGGCGAAAGATGTAGGAGAGAAATCCAGAGA 2064
||||||||||||||| ||||| ||||||||| ||||||||||||||||||||| ||||||
Sbjct 1944 TGGAAATCTGATTGCGAAGCTCAAGAAGATGACGAAAGATGTAGGAGAGAAATGCAGAGA 2003
Query 2065 AGTAATTTACTTGATCATAGAGAAGATAAGCCTTCTGATATCAGCCTTAAAACAACAAGT 2124
|||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2004 AGTAATCAACTTAATCATAGAGAAGATAAGCCTTCTGATATCAGCCTTGAAACAACAAGT 2063
Query 2125 TCATGGCATGGAGAACAAAGCCAAAGACCTCAAAATCAAAACTAAGTCTAAAGCAGAGGA 2184
|||||||||||||||||||||||||||||| ||||| ||||| |||||||||| ||||||
Sbjct 2064 TCATGGCATGGAGAACAAAGCCAAAGACCTGAAAATGAAAACCAAGTCTAAAGTAGAGGA 2123
Query 2185 AGTGTGGAGACAAACGAGCTTGAGGGCTGATGAGATCAGAAATATCTCTATAGTGAAGGC 2244
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2124 AGTGTGCAGACAAACGAGCTTGAGGGTTGATGAGATCAGAAATATCTCTATAGTGAAGGC 2183
Query 2245 TAAGGAGACTGTGGAAGAGTTTAAGGACAGAGTCGGTAAACTCGGCGAGAAATTCAAGTC 2304
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2184 TAAGGAGACTGTAGAAGAGTTTAAGGACAGAGTCGGGAAACTCGGCGAGAAATTCAAGTC 2243
Query 2305 GAAGTAG 2311
|||||||
Sbjct 2244 GAAGTAG 2250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92749746575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5