BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G52415.1

Length=1395
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg949801 jgi|Araly1|949801|scaffold_801688.1                        254    2e-66


> Ahg949801 jgi|Araly1|949801|scaffold_801688.1
Length=905

 Score =  254 bits (137),  Expect = 2e-66
 Identities = 209/242 (86%), Gaps = 12/242 (5%)
 Strand=Plus/Plus

Query  647  TCAAATGCTTCCTCTCCACT-TATTCGAAAATCCAAAAAATGGATATATATTCGACGGGC  705
            |||| ||||||||||| | | ||||||||| |||||||||||||||||| ||||| ||||
Sbjct  359  TCAAGTGCTTCCTCTCTA-TCTATTCGAAATTCCAAAAAATGGATATATCTTCGAGGGGC  417

Query  706  AAAAATGCGAGTTTGGTGTTGAAGTGATGGTTGTTCCACCCCTTACCAATTGGGAAGTGA  765
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  
Sbjct  418  AAAAATGCGAGTTTGGTGTTGAAGTCATGGTTGTTCCACCCCTTACCAATTGGGAAGTC-  476

Query  766  TGTCTTTTGATCAGAAACTCTCACCATCCACATTCTCCTGGAGTG-C--C----AATGGT  818
            |  ||||| |||||||||||||| |||||| ||||||||||| || |  |    || |||
Sbjct  477  T--CTTTTAATCAGAAACTCTCAACATCCATATTCTCCTGGACTGTCATCTGTCAAGGGT  534

Query  819  TTCTCCTTATTGACAGAGAATCTTTATGTGTCAAACAACTTTTCAGTTGGAGGAAGAGAA  878
            |||||| |||||| |||||||| |||||| ||   |||||||||| ||||||||| ||||
Sbjct  535  TTCTCCGTATTGAAAGAGAATCCTTATGTTTCCCCCAACTTTTCAATTGGAGGAAAAGAA  594

Query  879  TG  880
            ||
Sbjct  595  TG  596


 Score =  182 bits (98),  Expect = 8e-45
 Identities = 135/151 (89%), Gaps = 9/151 (6%)
 Strand=Plus/Plus

Query  1250  TTAACGTCTGTTACAAGAAATCAACTCAAGGGTGGGGTTGCGAAGATTTTG-CGGCTATA  1308
             ||||||||||||||||||||||||| |||||||||||||||||| |||||| |  |||||
Sbjct  727   TTAACGTCTGTTACAAGAAATCAACCCAAGGGTGGGGTTGCGAACATTTTGTC-ACTATA  785

Query  1309  GCC-A--T-CGGGAGTGTAATTACTTGGACAATGACACTTTGACATTGGAGGTCGAATTT  1364
             ||| |  | |||||| |   || |||||||||||||||||||||||||||||||||||||
Sbjct  786   GCCAATCTGCGGGAG-G--GTTGCTTGGACAATGACACTTTGACATTGGAGGTCGAATTT  842

Query  1365  AAAGTTGTTTCTACAACCAAGTATTCTCACC  1395
             ||| |||||||| ||||||||||||||||||
Sbjct  843   AAAATTGTTTCTGCAACCAAGTATTCTCACC  873


 Score =  167 bits (90),  Expect = 2e-40
 Identities = 100/105 (95%), Gaps = 0/105 (0%)
 Strand=Plus/Plus

Query  385  GGTTATATTTCAATGTACGTAGAAATAGACAGCACATCTGAAGTTTTTGCATATGTCAAG  444
            |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  258  GGTTTTATTTCAATGTACGTGGAAATAGACAGCACATCTGAAGTTTTTGCATATGTCAAG  317

Query  445  TTCTTCGTCTACAATAAGAAAGAACAAATGTACTTTACTATTCAA  489
            |||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct  318  TTCTTCGTCTACAACAAGAACGAACAAAAGTACTTTACTATTCAA  362


 Score =  163 bits (88),  Expect = 3e-39
 Identities = 127/145 (88%), Gaps = 5/145 (3%)
 Strand=Plus/Plus

Query  4    ACATGCTCAAATCCAACTTCTACGATTGCGAGCAGTTTCACGGAACATCCTCGCCTTCTT  63
            |||||||||||||||||||||||||||| || ||| || ||||||||||||  |||||  
Sbjct  117  ACATGCTCAAATCCAACTTCTACGATTGTGAACAGCTTAACGGAACATCCT--CCTTC--  172

Query  64   GCTATTCTGTCAAGATTGAGAATCTCGCACAACTTAACAATGAAAAATACCAATCTCGTC  123
              ||||| |||||||||||||||||| || | ||||| ||||| ||||||||||||||||
Sbjct  173  -ATATTCCGTCAAGATTGAGAATCTCACATATCTTAAGAATGACAAATACCAATCTCGTC  231

Query  124  GTTTCACGGTAGGCGGGTATTACTG  148
            ||||||||||||||||| || ||||
Sbjct  232  GTTTCACGGTAGGCGGGCATAACTG  256


 Score =  134 bits (72),  Expect = 2e-30
 Identities = 114/133 (86%), Gaps = 7/133 (5%)
 Strand=Plus/Plus

Query  1007  TGTCCTTATTTCTGCATATATATAGCTGATAGTGAAACCTTTTCGGAGGATGAGAAGATT  1066
             ||||||||||| |||    || ||||||||||||||||| | ||||||||||| ||| ||
Sbjct  598   TGTCCTTATTTTTGC----ATGTAGCTGATAGTGAAACCCTGTCGGAGGATGATAAGGTT  653

Query  1067  TACGTGCATGCAGATCTCCGAGTATTATA---CCCACGTCCACATGTATACAACAATCAC  1123
             ||||||||||||||||||||||||||||    ||||||||||| |  |||| ||||||||
Sbjct  654   TACGTGCATGCAGATCTCCGAGTATTATTTTGCCCACGTCCACGTCAATACTACAATCAC  713

Query  1124  GTCACACAGAAAC  1136
             |||||||| ||||
Sbjct  714   GTCACACACAAAC  726



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 52145545405


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5