BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52430.1
Length=1886
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495313 jgi|Araly1|495313|fgenesh2_kg.8__1129__AT5G52430.1 2410 0.0
> Ahg495313 jgi|Araly1|495313|fgenesh2_kg.8__1129__AT5G52430.1
Length=1744
Score = 2410 bits (1305), Expect = 0.0
Identities = 1639/1791 (92%), Gaps = 59/1791 (3%)
Strand=Plus/Plus
Query 1 AAGCTGGACTAGATAACGACCGGTGTGAGTgagagagagagagagagaATTCGATCCATC 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1 AAGCTGGACTAGATAACGACCGGTGTGAGTGATAGAGAGAGAGAGAGAATTCAATCCATC 60
Query 61 ATTAT-ACAAAACCTTCTTCGCtttttatttgatttatttatccttttctcatttgattt 119
||||| |||||| | ||| | |||| ||| | | ||| | | ||||
Sbjct 61 ATTATAACAAAAAC--CTT--C------TTTG-----TTTCT-CATTT-T-A----ATTT 98
Query 120 tCTCGGGAAAATCTCTCTGCGTAGTAGATCCAAGTGGTGGTTTCTGAGTAGTAGTA--AG 177
|||||||||||||||||| | | |||||||||||| ||||||||||||||||||| ||
Sbjct 99 TCTCGGGAAAATCTCTCTTC--A-TAGATCCAAGTGTTGGTTTCTGAGTAGTAGTAGTAG 155
Query 178 CAAGCAAATCTGGATGTTATTGTAGTCGGTGTGAATCTGAGTTCGAAAGATGAGGAACGT 237
| |||||||||||||||||||| | ||||||||||||| | || || |||
Sbjct 156 TACGCAAATCTGGATGTTATTGT--T-GGTGTGAATCTGA--T-----GA-GA--AAC-- 200
Query 238 TGTTAATAACAGCGTTGAGACTGTTAACGCCGCCGCTACCGCCATCGTCACCGCCGAGTC 297
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 -GTTAATAATAGCGTTGAGACTGTTAACGCCGCCGCTACCGCCATCGTCACCGCCGAGTC 259
Query 298 TCGAGTACAGCCGTCTTCT-TCTCAGAAGGGAAGATGGGGAAAATGTTGGAGTTTATATT 356
|||||| |||||||| ||| | ||||||||||||||||||||| ||||||||||||||||
Sbjct 260 TCGAGTTCAGCCGTCGTCTGT-TCAGAAGGGAAGATGGGGAAAGTGTTGGAGTTTATATT 318
Query 357 CATGTTTTGGAACTCAGAAGAACAATAAAAGGATTGGTAATGCTGTGCTTGTACCTGAAC 416
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 CGTGTTTTGGAACTCAAAAGAACAATAAAAGGATTGGTAATGCTGTGCTTGTACCTGAAC 378
Query 417 CGGTTACATCTGGAGTTCCGGTAGTTACTGTTCAAAACTCAGCTACTTCAACTACTGTTG 476
||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 379 CGGTTGCATCTGGAGTTCCGGTTGTTACTGTTCAAAACTCAGCTACTTCAACTACAGTTG 438
Query 477 TTCTTCCCTTTATAGCTCCTCCTTCATCTCCAGCTTCGTTTTTGCAATCGGATCCTTCAT 536
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 439 TTCTTCCCTTTATAGCTCCTCCTTCATCTCCAGCTTCGTTTTTGCAATCCGATCCTTCAT 498
Query 537 CGGTTTCTCACTCGCCTGTTGGTCCACTTTCTCTTACTAGCAATACATTCTCGCCTAAGG 596
|||||||||| ||||||| ||||| ||||||||||||||||||||| || || |||||||
Sbjct 499 CGGTTTCTCATTCGCCTGGTGGTCAACTTTCTCTTACTAGCAATACTTTTTCCCCTAAGG 558
Query 597 AGCCTCAATCTGTCTTTACCGTTGGACCTTATGCTAATGAAACTCAACCAGTCACTCCTC 656
| ||||| || |||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 559 AACCTCAGTCGGTCTTTACTGTTGGACCGTATGCTAATGAAACTCAACCTGTCACTCCTC 618
Query 657 CGGTGTTCTCTGCGTTTATAACTGAGCCATCTACTGCACCGTATACTCCACCTCCTGAAT 716
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 619 CGGTGTTCTCTGCGTTTATAACTGAACCATCTACTGCACCGTATACTCCGCCTCCGGAAT 678
Query 717 CATCAGTCCATATAACTACACCTTCTTCACCTGAAGTGCCCTTTGCTCAGTTGCTTACTT 776
|||| || ||||||||||| || |||||||||||||| |||||||||||||||||||| |
Sbjct 679 CATCGGTTCATATAACTACTCCGTCTTCACCTGAAGTTCCCTTTGCTCAGTTGCTTACAT 738
Query 777 CTTCGTTGGAGCTAACTCGGAGGGATAGTACTAGTGGGATGAATCAAAAGTTTTCGTCTT 836
|||| |||||||||||||||||| |||||| ||| ||||||||||||||||| ||||| |
Sbjct 739 CTTCTTTGGAGCTAACTCGGAGGAATAGTAGTAGCGGGATGAATCAAAAGTTCTCGTCGT 798
Query 837 CGCACTATGAGTTTCGGTCTAATCAGGTGTGTCCGGGGAGTCCTGGTGGTGGTAATCTAA 896
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 799 CGCACTATGAGTTTCGGTCTAATCAAGTGTGTCCGGGGAGTCCTGGTGGTGGTAATCTAA 858
Query 897 TCTCTCCC-GGGTCAGTGATTTCAAACTCTGGTACATCTTCTCCTTACCCTGGTAAATCA 955
|||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 859 TCTC-CCCTGGGTCAGTGATTTCAAACTCTGGTACATCTTCTCCTTACCCGGGTAAATCA 917
Query 956 CCCATGGTTGAGTTTCGAATAGGCGAGCCTCCAAAGTTCTTGGGTTTTGAGCACTTTACA 1015
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 918 CCCATGGTTGAGTTTCGAATAGGCGAGCCTCCAAAGTTCTTAGGTTTTGAGCACTTCACA 977
Query 1016 GCTCGTAAATGGGGATCGAGGTTCGGTTCTGGATCGATCACACCTGTTGGGCATGGTTCA 1075
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 978 GCTCGTAAATGGGGATCGAGGTTTGGTTCTGGATCGATCACACCTGTTGGGCACGGTTCA 1037
Query 1076 GGTTTGGCTTCAGGCGCTCTGACACCAAATGGTCCAGAGATAGTATCTGGAAACTTAACA 1135
|| |||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||
Sbjct 1038 GGATTGGCTTCAGGCGCTCTGACACCAAATGGTTTAGAGATAATATCTGGAAACCTAACA 1097
Query 1136 CCCAACAATACCACATGGCCTCTTCAAAATCAGATCTCTGAGGTCGCTTCACTGGCAAAT 1195
|||| ||| |||||||||||||| || |||||||||||||||||||| || || || |||
Sbjct 1098 CCCAGCAACACCACATGGCCTCTACAGAATCAGATCTCTGAGGTCGCGTCTCTAGCCAAT 1157
Query 1196 TCGGATCATGGCTCTGAAGTCATGGTAGCAGATCACAGAGTTTCGTTTGAGTTAACAGGT 1255
|||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1158 TCGGATCACGGCTCTGAAGTCATTGTAGCAGATCACAGAGTTTCATTTGAGTTAACAGGA 1217
Query 1256 GAAGACGTTGCACGTTGTCTTGCAAGCAAGCTAAATCGATCACACGACAGAATGAACAAC 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 GAAGACGTTGCACGTTGTCTTGCAAGCAAGCTAAATCGATCACACGACAGAATGAACAAC 1277
Query 1316 AATGACCGGATCGAAACAGAGGAGAGTTCATCAACAGACATAAGAAGAAACATAGAGAAA 1375
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1278 AATGATCGGATCGAAACAGAGGAGAGTTCATCAACAGACATAAGAAGAAACATGGAGAAA 1337
Query 1376 AGGTCAGGAGACAGAGAGAAC-GAACAGCATAGAATTCAGAAGCTGAGTTCCTCATCGAT 1434
||| || ||| ||||| ||| |||||||| |||||||||||||||| ||||||||| ||
Sbjct 1338 CGGTTAGCAGATAGAGA-AACCGAACAGCAGAGAATTCAGAAGCTGAATTCCTCATCAAT 1396
Query 1435 TGGATCTAGCAAAGAATTTAAATTCGACAACACGAAAGACGAGAATATCGAGAAGGTTGC 1494
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1397 TGGTTCTAGCAAAGAATTCAAATTCGACAACACGAAAGACGAGAATATCGAAAAGGTTGC 1456
Query 1495 AGGAAACAGCTGGAGTTTCTTCCCGGGGTTACGATCTGGAGTCAGCTAACCAAATTAAAA 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1457 AGGAAACAGCTGGAGTTTCTTCCCGGGGTTACGATCTGGAGTCAGCTAACCAAATAAAAA 1516
Query 1555 TGACATCTCTTCTTCTTCTTC--C--TCATTACCAAAGACAGAGATATAAAACCCTAT-A 1609
||| |||||||||||||||| | ||||||||||||||||| ||| |||||||||| |
Sbjct 1517 CGACGTCTCTTCTTCTTCTTCTTCAATCATTACCAAAGACAGATATA-AAAACCCTATTA 1575
Query 1610 AGTAACAAACCTTGA-ACATGGATCGTGAAAAAAGGTAAGAGATTTGGGTTCTAACAACT 1668
||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1576 AGTAACAAACCTT-ACACATGGATCGTGAAGAAAGGTAAGAGATTTGGGTTCTAACAACT 1634
Query 1669 TATACACACTGAATAAATAAGCTTAAAGCTTTGATTTGCAGTTAACTTCTGTACTCATGT 1728
||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||
Sbjct 1635 TATACACACTGAATAAATAAGCT-AAAGCTTTGGTTTGCAATTAACTTCTGTACTCATGT 1693
Query 1729 AGTTGGAAACTTTGGAATATTCTTGGATCAGCTCCTACATCTAATCTTGTT 1779
|||| ||||||| ||| |||| |||||||||||||||||| ||||||||||
Sbjct 1694 AGTTAGAAACTTGGGATTATTATTGGATCAGCTCCTACATATAATCTTGTT 1744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70847855700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5