BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52440.1
Length=1210
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949804 jgi|Araly1|949804|scaffold_801691.1 1321 0.0
Ahg935265 jgi|Araly1|935265|scaffold_403253.1 198 7e-50
Ahg907595 jgi|Araly1|907595|Al_scaffold_0002_676 196 2e-49
Ahg903545 jgi|Araly1|903545|Al_scaffold_0003_673 196 2e-49
> Ahg949804 jgi|Araly1|949804|scaffold_801691.1
Length=833
Score = 1321 bits (715), Expect = 0.0
Identities = 795/833 (95%), Gaps = 8/833 (1%)
Strand=Plus/Plus
Query 118 TACAATTTCGAAGCTGCCCATGGCCATGGCGTTACAGATTATAG---CTTCTTCTTCTTC 174
||||||||||||||| |||||| |||||||||| |||||||||| |||||||||||||
Sbjct 2 TACAATTTCGAAGCTTCCCATGACCATGGCGTTTCAGATTATAGCTTCTTCTTCTTCTTC 61
Query 175 ATCACCAACGATTACAAAATCTCACCTTTTCTCTTATCCTCCTCTGCAATCTCGTTATAA 234
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 62 ATCACCAACTATTACAAAATCTCACCTTTTCTCTTATCCTCCTCTGCAATCTTGTTATAA 121
Query 235 AGCTTCGAAACCTAACCTCTCCTCATGGTTTTCTCTTC-TGGGTTCTTCTCGTTTCTCTC 293
||||||||||||||| |||||||| |||||||||| || |||||||||||| ||||||||
Sbjct 122 AGCTTCGAAACCTAAACTCTCCTCGTGGTTTTCTC-TCATGGGTTCTTCTCCTTTCTCTC 180
Query 294 CTTACATTGGTTTAAAGCATTTGGGCATCTCAATCTCGCCGAAATCTTCAAACCCAGAGA 353
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 181 CTTACATTGGTTTAAAGCATTTGGGCATCTCAATCTCTCCTAAATCTTCAAACCCAGAGA 240
Query 354 AGAAGAGAAGATGTAAGAGTATGATGATTCGTGCGTCTCTGTTTGGTGTTGGAGCACCTG 413
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 AGAAGAGAAGATGTAAGAGTATGATGATTCGTGCGTCTTTGTTTGGTGTTGGAGCACCTG 300
Query 414 AGGCTTTGGTTATTGGTGTTGTTGCTTTGTTAGTCTTTGGTCCTAAAGGTCTTGCTGAGG 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGGCTTTGGTTATTGGTGTTGTTGCTTTGTTAGTCTTTGGTCCTAAAGGTCTTGCTGAGG 360
Query 474 TAGCTCGGAATCTTGGAAAAACTCTGCGTACATTTCAGCCAACGATTAGAGAGCTACAGG 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 TAGCTCGGAATCTTGGAAAAACTCTGCGTACATTTCAGCCAACGATTAGAGAGCTACAAG 420
Query 534 ATGTTTCAAGAGATTTTAAAAGTACCCTTGAGCGTGAAATTGGCCTTGATGATATCTCAA 593
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 421 ATGTTTCAAGAGATTTTAAAAGTACCCTTGAGCGTGAAATTGGCCTTGATGAAATCTCAA 480
Query 594 CGCCAAACGTGTACAACCAAAACAGAACGAATCCTGTTCAACCTCCTCCTCC---ACCAC 650
|||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||
Sbjct 481 CGCCAAACGTGTACAACCAAAACAGAACCAATCTTGTTCAACCTCCTCCTCCTCCACCAC 540
Query 651 CACCACCATCAGTTCCTAGCACTGAAGCTCCTGTGACTGCAAATGATCCCAATGATTCAC 710
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 541 CACCACCATCAGTTCCTAGCAATGAAGCTCCTGTGACTGCAAATGATCCCAATGATTCAC 600
Query 711 AATCACCAAAAGCTTACACATCCGAGGATTACCTCAAGTTCACTGAAGAGCAGCTAAAAG 770
||||||| |||||||||||| | ||||||||| | ||| |||||||||||||||||||||
Sbjct 601 AATCACCTAAAGCTTACACAACGGAGGATTACTTAAAGATCACTGAAGAGCAGCTAAAAG 660
Query 771 CTTTGTCTCCCGCTGAAAGCCAAACAGAGGATCAAACTCAGACTCAAGAACCGCCACAAC 830
||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 661 CTTCGTCTCCCGCTGAAAGCCAAACAGAGGATCAAAATCAGACTCAAGAACCGCTACAAC 720
Query 831 CCACAACTGTACAAACACCTACCGGAGAAAGCCAGCCCAATGGTACAGCGAGAGAAACAA 890
|||| | |||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 721 CCACGAGTGTACAAACACCAACCGGAGAAAGCCAGCCCAATGGTACAACGAGAGAAACAA 780
Query 891 CAGCTGCATCTCCTCCAAGGCAAGATTGAAAGCACCAAAATATGACTTGTAGT 943
||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 781 CAGCTGCATCTCCTCCAAGGCAAGATTGAAAGCACTAAAATATGACTTGTAGT 833
> Ahg935265 jgi|Araly1|935265|scaffold_403253.1
Length=260
Score = 198 bits (107), Expect = 7e-50
Identities = 135/148 (91%), Gaps = 4/148 (3%)
Strand=Plus/Plus
Query 327 TCTCGCCGAAATCTTCAAACCCAGAGAAGAAGAGAAGATGTAAGAGTATGATGA-TTCGT 385
|||| || |||||||||||||||||||||||||||||||||||| ||| ||||| || |
Sbjct 31 TCTC-CC-AAATCTTCAAACCCAGAGAAGAAGAGAAGATGTAAGTGTACGATGAATTT-T 87
Query 386 GCGTCTCTGTTTGGTGTTGGAGCACCTGAGGCTTTGGTTATTGGTGTTGTTGCTTTGTTA 445
|||||| |||||| ||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 88 GCGTCTTTGTTTGCTGTTGGAGCACCTGAGGCTTTAGTTATTGGTGTTGTCGCTTTGTTA 147
Query 446 GTCTTTGGTCCTAAAGGTCTTGCTGAGG 473
||||||||||||||||| |||| |||||
Sbjct 148 GTCTTTGGTCCTAAAGGCCTTGATGAGG 175
> Ahg907595 jgi|Araly1|907595|Al_scaffold_0002_676
Length=477
Score = 196 bits (106), Expect = 2e-49
Identities = 134/147 (91%), Gaps = 4/147 (3%)
Strand=Plus/Plus
Query 327 TCTCGCCGAAATCTTCAAACCCAGAGAAGAAGAGAAGATGTAAGAGTATGATGA-TTCGT 385
|||| || |||||||||||||||||||||||||||||||||||| ||| ||||| || |
Sbjct 244 TCTC-CC-AAATCTTCAAACCCAGAGAAGAAGAGAAGATGTAAGTGTACGATGAATTT-T 300
Query 386 GCGTCTCTGTTTGGTGTTGGAGCACCTGAGGCTTTGGTTATTGGTGTTGTTGCTTTGTTA 445
|||||| |||||| ||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 301 GCGTCTTTGTTTGCTGTTGGAGCACCTGAGGCTTTAGTTATTGGTGTTGTCGCTTTGTTA 360
Query 446 GTCTTTGGTCCTAAAGGTCTTGCTGAG 472
||||||||||||||||| |||| ||||
Sbjct 361 GTCTTTGGTCCTAAAGGCCTTGATGAG 387
> Ahg903545 jgi|Araly1|903545|Al_scaffold_0003_673
Length=306
Score = 196 bits (106), Expect = 2e-49
Identities = 134/147 (91%), Gaps = 4/147 (3%)
Strand=Plus/Plus
Query 327 TCTCGCCGAAATCTTCAAACCCAGAGAAGAAGAGAAGATGTAAGAGTATGATGA-TTCGT 385
|||| || |||||||||||||||||||||||||||||||||||| ||| ||||| || |
Sbjct 73 TCTC-CC-AAATCTTCAAACCCAGAGAAGAAGAGAAGATGTAAGTGTACGATGAATTT-T 129
Query 386 GCGTCTCTGTTTGGTGTTGGAGCACCTGAGGCTTTGGTTATTGGTGTTGTTGCTTTGTTA 445
|||||| |||||| ||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 130 GCGTCTTTGTTTGCTGTTGGAGCACCTGAGGCTTTAGTTATTGGTGTTGTCGCTTTGTTA 189
Query 446 GTCTTTGGTCCTAAAGGTCTTGCTGAG 472
||||||||||||||||| |||| ||||
Sbjct 190 GTCTTTGGTCCTAAAGGCCTTGATGAG 216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45175656645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5