BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52450.1
Length=1718
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949805 jgi|Araly1|949805|scaffold_801692.1 2386 0.0
Ahg482381 jgi|Araly1|482381|fgenesh2_kg.4__1441__AT2G34360.1 1284 0.0
Ahg328320 jgi|Araly1|328320|fgenesh1_pm.C_scaffold_7000547 867 0.0
Ahg476510 jgi|Araly1|476510|fgenesh2_kg.2__1640__AT1G73700.1 773 0.0
> Ahg949805 jgi|Araly1|949805|scaffold_801692.1
Length=1501
Score = 2386 bits (1292), Expect = 0.0
Identities = 1435/1505 (95%), Gaps = 6/1505 (0%)
Strand=Plus/Plus
Query 92 CTTTGCTATTTCTCaaaaaaaaaTGAGGGACGACAGAGAAAGAGGAGAGGGTGATTTGTC 151
|||||||||||||| ||||||||||||||||| |||||||||||||||| ||| |||||
Sbjct 1 CTTTGCTATTTCTC--AAAAAAATGAGGGACGATAGAGAAAGAGGAGAGGATGAATTGTC 58
Query 152 ATGGCCTTTGATCGGAGAGAAAAGTAGTGTCAAGGAAGAAGTGAAGAAGCAGCTATGGCT 211
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 59 ATGGCCTTTGATCGGAGAGAAAAGTAGTGTCAAGGAGGAAGTGAAGAAGCAGATATGGCT 118
Query 212 TTCAGGCCCACTCATCGCCGTGAGTCTTCTTCAGTTTTGTCTACAAGTTATCTCCGTCAT 271
||| || ||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 119 TTCGGGTCCACTCATCACCGTGAGCCTTCTTCAGTTTTGTCTACAAGTTATCTCCGTCAT 178
Query 272 GTTCGTTGGCCATCTTGGCTCTCTTCCTCTCTCCGCCGCATCCATCGCCACCTCTTTCGC 331
|||||| || ||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 179 GTTCGTCGGTCATCTTGGCTCTCTTCCTCTCTCCGCCGCCTCTATCGCCACTTCTTTCGC 238
Query 332 CTCCGTCACCGGTTTCAGCTTCCTCATGGGAACAGCAAGTGCGTTAGATACGCTTTGTGG 391
||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 239 CTCAGTCACCGGTTTCAGCTTCCTCATGGGAACAGCAAGTGCCTTAGATACACTTTGTGG 298
Query 392 CCAAGCGTACGGAGCAAAGAAGTACGGAATGTTAGGAATACAAATGCAAAGAGCTATGTT 451
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 299 CCAAGCTTACGGAGCAAAGAAGTACGGAATGTTAGGAATACAAATGCAAAGAGCAATGTT 358
Query 452 TGTTCTTACACTAGCTTCTATTCCTCTCTCCATCATTTGGGCTAACACAGAGCACCTTCT 511
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 359 TGTTCTTACACTAGCTTCTATTCCTCTCTCCATCATATGGGCTAACACAGAGCATCTTCT 418
Query 512 CGTCTTCTTTGGACAAAACAAATCCATTGCTACACTCGCTGGCTCCTACGCAAAATTCAT 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CGTCTTCTTTGGACAAAACAAATCCATTGCTACACTCGCTGGCTCCTACGCAAAATTCAT 478
Query 572 GATCCCAAGCATCTTCGCCTACGGTCTTCTTCAATGCTTTAACAGGTTCTTGCAGGCCCA 631
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 479 GATCCCAAGCATCTTCGCCTACGGTCTCCTTCAATGCTTTAACAGGTTTTTGCAGGCCCA 538
Query 632 AAACAATGTGTTTCCTGTGGTTTTCTGCTCTGGAGTAACAACTTCTCTACATGTCCTCCT 691
|||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 539 AAACAATGTGTTTCCTGTGGTTTTCTGCTCTGGAGTCACCACTTCTCTTCATGTCCTCCT 598
Query 692 TTGTTGGGTCTTGGTTTTCAAATCTGGTTTAGGGTTTCAAGGAGCTGCTCTTGCCAACTC 751
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTGTTGGATCTTGGTTTTTAAATCTGGTTTAGGGTTTCAAGGAGCTGCTCTTGCCAACTC 658
Query 752 CATTTCGTATTGGCTTAATGTCGTTCTCTTGTTCTGTTACGTCAAGTTTTCGCCTTCTTG 811
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 659 CATTTCGTATTGGCTTAATGTCATTCTCTTGTTCTGTTACGTTAAGTTTTCGCCTTCTTG 718
Query 812 CTCACTAACTTGGACCGGTTTCTCTAAGGAGGCTCTACGCGATATCCTCCCTTTTCTGAG 871
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CTCACTGACTTGGACCGGTTTCTCTAAGGAGGCTCTACGCGATATCCTCCCTTTTCTGAG 778
Query 872 ACTAGCTGTTCCTTCTGCACTTATGGTCTGCTTAGAGATGTGGTCCTTTGAACTTTTAGT 931
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 779 ACTAGCTGTTCCTTCTGCACTTATGGTCTGCTTAGAGATGTGGTCCTTTGAATTTTTAGT 838
Query 932 TCTCTTATCAGGACTTCTTCCAAACCCGGTTCTAGAAACTTCTGTTCTCTCAATCTGCCT 991
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 839 TCTCTTATCAGGACTTCTTCCAAACCCGGTTCTAGAAACTTCTGTTCTCTCTATCTGCCT 898
Query 992 TAATACATCAGGAACAATGTGGATGATCCCATTTGGTCTAAGTGGCGCTGCAAGCACGAG 1051
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 899 TAATACAGCAGGAACAATGTGGATGATCCCATTTGGTCTCAGTGGCGCTGCAAGCACGAG 958
Query 1052 GATCTCAAATGAATTAGGAGCGGGTAACCCGAAAGTGGCTAAGCTTGCGGTGCGTGTGGT 1111
|||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 959 GATCTCGAATGAGTTAGGAGCGGGTAATCCGAAAGTGGCTAAGCTTGCGGTGCGTGTGGT 1018
Query 1112 CATTTGCATTGCAGTAGCAGAAAGTATAGTGATCGGATCAGTCTTGATATTGATAAGGAA 1171
||| ||||||||||| |||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1019 CATATGCATTGCAGTCGCAGAAAGTATAGTGATCGGATCAATTTTGATATTGATAAGGAA 1078
Query 1172 TATATGGGGATTAGCTTATAGTAGTGAACTAGAAGTAGTCAGCT-ACGTAGCCTCGATGA 1230
|||||||||||| |||||||||||||||| |||||||||| || |||||||||| ||||
Sbjct 1079 TATATGGGGATTGGCTTATAGTAGTGAACCGGAAGTAGTCA-CTTACGTAGCCTCCATGA 1137
Query 1231 TGCCAATTCTCGCCTTAGGAAATTTTCTAGACAGTCTTCAATGCGTTCTCTCAGGGGTTG 1290
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TGCCGATTCTCGCCTTAGGCAATTTTCTAGACAGTCTTCAATGCGTTCTCTCAGGGGTTG 1197
Query 1291 CTAGAGGATGTGGATGGCAGAAGATAGGAGCAATCATTAATCTTGGTTCATATTATCTTG 1350
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1198 CTAGAGGATGTGGATGGCAGAAGATAGGAGCAATCATTAACCTTGGTTCATATTATCTTG 1257
Query 1351 TTGGAGTTCCTTCAGGATTGTTACTTGCTTTTCACTTTCACGTTGGTGGTCGGGGGCTTT 1410
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1258 TTGGAGTTCCTTCAGGCTTGTTACTTGCTTTCCACTTTCACGTTGGTGGTCGGGGGCTTT 1317
Query 1411 GGCTTGGAATCATATGTGCCCTCGTTGTTCAAGTTTTTGGTCTTGGCCTCGTCACTATTT 1470
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1318 GGCTTGGAATCATATGTGCCCTCGTTGTTCAAGTTTTTGGTCTTGCCCTCGTCACCATTT 1377
Query 1471 TTACAAATTGGGATGAAGAGGCCAAGAAAGCTACAAACAGAATTGAGTCTTCTTCAAGTG 1530
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1378 TTACAAATTGGGATGAAGAGGCCAAGAAAGCTACAAATAGAATTGAGTCTTCTTCAAGTG 1437
Query 1531 TGAAAG-ATTTTGCAGTCGATGACAGATCAGTTGTTGTATTTTGAGAACCATTGTGTGTG 1589
| |||| ||| |||| | ||||| | ||| |||||||||| ||||| |||||||||||
Sbjct 1438 T-AAAGGATTCTGCACTTGATGATGGGTCAATTGTTGTATTCTGAGAGCCATTGTGTGTT 1496
Query 1590 TTTTG 1594
|||||
Sbjct 1497 TTTTG 1501
> Ahg482381 jgi|Araly1|482381|fgenesh2_kg.4__1441__AT2G34360.1
Length=1422
Score = 1284 bits (695), Expect = 0.0
Identities = 1141/1351 (84%), Gaps = 51/1351 (4%)
Strand=Plus/Plus
Query 168 GAGAAAAGTAG--T-GTCAAGGAAGAAGTGAAGAAGCAGCTA-TGGCTT-TCAGGCCCAC 222
|||| |||||| | || ||||| |||||||||||||||||| | | || || || ||||
Sbjct 55 GAGAGAAGTAGATTAGTAAAGGAGGAAGTGAAGAAGCAGCTACT-G-TTGTCTGGGCCAC 112
Query 223 TCATCGCCGTGAGTCTTCTTCAGTTTTGTCTACAAGTTATCTCCGTCATGTTCGTTGGCC 282
| ||||| ||||||||||||||||||||||| ||| | ||||| ||||||||||| || |
Sbjct 113 TAATCGCAGTGAGTCTTCTTCAGTTTTGTCTGCAAATAATCTCAGTCATGTTCGTCGGAC 172
Query 283 ATCTTGGCTCTCTTCCTCTCTCCGCCGCATCCATCGCCACCTCTTTCGCCTCCGTCACCG 342
||||||||||||||||||| || ||||| ||||| |||||||| ||||||||||||||||
Sbjct 173 ATCTTGGCTCTCTTCCTCTTTCTGCCGCCTCCATTGCCACCTCCTTCGCCTCCGTCACCG 232
Query 343 GTTTCAGCTTCCTCATGGGAACAGCAAGTGCGTTAGATAC-GCTTTGTGGCCAAGCGTAC 401
| |||| |||||| |||||||||||||||||||| || || | ||||||| ||| |||||
Sbjct 233 GCTTCACCTTCCTTATGGGAACAGCAAGTGCGTTGGACACAG-TTTGTGGTCAATCGTAC 291
Query 402 GGAGCAAAGAA-GTACGGAATGTTAGGAATACAAATGCAAAGAGCTATGTTTGTTCTTAC 460
|||||||| || ||||||||||||||| ||||| ||||||||||| ||| ||||||||||
Sbjct 292 GGAGCAAA-AATGTACGGAATGTTAGGCATACAGATGCAAAGAGCAATGCTTGTTCTTAC 350
Query 461 AC-TAGCTTCTATTCCTCTCTCCATCATTTGGGCTAACACAGAGCACCTT-CTCGTCTTC 518
| | | |||||||||||||||||| ||||||| ||||||||||| ||| || ||||||
Sbjct 351 TCTTTTC-TCTATTCCTCTCTCCATCGTTTGGGCCAACACAGAGCA-CTTCCTTGTCTTC 408
Query 519 TTTGGACAAAACAAATCCATTGCTACA-CTCGCTGGCTCCTACGCAAAATTCATGATCCC 577
|| || ||| | || |||||||| ||| ||| ||||||||||||| | ||||||||||||
Sbjct 409 TTCGGCCAAGATAAGTCCATTGC-ACACCTCTCTGGCTCCTACGCCAGATTCATGATCCC 467
Query 578 AAGCATCTTCGCCTACGGTCTTCTTCAATG-CTTTAACAGGTTCTTGCAGGCCCAAAACA 636
||||||||||||||||||||||||||||| || |||||||| |||||||| || ||||
Sbjct 468 TAGCATCTTCGCCTACGGTCTTCTTCAATGTCTC-AACAGGTTTTTGCAGGCGCAGAACA 526
Query 637 ATGTGTTTCCTGTGGTT-TTCTGCTCTGGAGTAACAACTTCTCTACATGTCCTCCTTTGT 695
|||||||||||||||| || || |||||||| || |||||||| || || || | |||
Sbjct 527 ATGTGTTTCCTGTGGTGGTT-TGTTCTGGAGTCACCACTTCTCTTCACGTGATCATCTGT 585
Query 696 TGGGTCTTGGTTTTCAAATCTGGTTTAGGGTTTCA-AGGAGCTGCTCTTGCCAACTCCAT 754
|||| |||||| || |||||||||||||||||| | |||||||||| | || || | |
Sbjct 586 TGGGCCTTGGTGTTGAAATCTGGTTTAGGGTTT-AGAGGAGCTGCTGTGGCGAA-TGCGG 643
Query 755 T-TCGTATTGGCTTAATGTCGTTCTCTTGTTC-TGTTACGTCAAGTTTTCGCCTTCTTGC 812
| ||||| |||||||||||| ||||||||| | |||||||||||||||||| ||||||||
Sbjct 644 TATCGTACTGGCTTAATGTCATTCTCTTGT-CGTGTTACGTCAAGTTTTCGTCTTCTTGC 702
Query 813 TCACTAACTTGGACCGGTTTCTCTAAGGAGGCTCTA-CGCGATATCCTCCCTTTTCTGA- 870
||| | || ||||| ||||||||||| ||||||| | | ||||||| |||||||| |||
Sbjct 703 TCATTGACCTGGACTGGTTTCTCTAAAGAGGCTC-AGCACGATATCATCCCTTTTATGAA 761
Query 871 GACTAGCTGTTCCTTCTGCACTTATGGTCTGCTTAGAGATGTGGTCCTTTGAACTTTTAG 930
| |||||| ||||||||||| ||||||| ||||||||||||||||||||||| ||||| |
Sbjct 762 G-CTAGCTATTCCTTCTGCAATTATGGTTTGCTTAGAGATGTGGTCCTTTGAGCTTTTGG 820
Query 931 TTCTCTTATCAGGACTTCTTCCAAACCCGGTTCTAGAAACTTCTGTTCTCT-CAATCTGC 989
|||||| |||||||||||||| ||||||||||||||||||||||| || | ||||||||
Sbjct 821 TTCTCTCGTCAGGACTTCTTCCGAACCCGGTTCTAGAAACTTCTGTCCT-TGCAATCTGC 879
Query 990 CTTAATACATCAGGAACAATGTGGATGATCCCATTTGGTCTAAGTGGCGCTGCAAGCACG 1049
|||||||||||||||||| | ||||||||||| ||||| || |||||||| ||||||||
Sbjct 880 CTTAATACATCAGGAACAGTCTGGATGATCCCGTTTGGCCTCAGTGGCGCCGCAAGCACA 939
Query 1050 AGGATCTCAAATGAATTAGGAGCGGGTAACCCGAAAGTGGCTAAGCTTGCGGTGCGTGTG 1109
||| | |||||||| |||||||| | || ||||||| ||||||||||||||| || |||
Sbjct 940 AGGGTGTCAAATGAGTTAGGAGCAAGAAATCCGAAAGGGGCTAAGCTTGCGGTTCGCGTG 999
Query 1110 GTCATTT-GCATTGC-AGT-AGCAGAAAGTATAGT-GATCGGATCAGTCTTGATATTGAT 1165
||| || || || | | | | ||| |||||| | | | ||||| || |||||| ||||
Sbjct 1000 GTC-TTGAGCTTTTCCA-TCAT-AGAGAGTATACTAGTT-GGATCGGTTTTGATACTGAT 1055
Query 1166 AAGGAATATATGGGGATTAGCTTATAGTAGTGAACTAGAAGTAGTCAGCTACGTAGCCTC 1225
|||||| || |||||||| ||||| |||||||| | ||||||| ||| || ||||||||
Sbjct 1056 AAGGAAGATCTGGGGATTCGCTTACAGTAGTGACCCCGAAGTAGCCAGATATGTAGCCTC 1115
Query 1226 GATGATGCCAATTCTCGCCTTAGGAAATTTTCTAGACAGTCTT-CAATGCGTTCTCTCAG 1284
||| |||| ||||| |||||||| | | ||||| || ||| ||| ||||||| ||||
Sbjct 1116 TATGTTGCCGATTCTTGCCTTAGGTCACTCCCTAGATAG-CTTTCAAAGCGTTCTTTCAG 1174
Query 1285 GGGTTGCTAGAGGATGTGGATGGCAGAAGATAGGAGCAATCATTAATCTTGGTTCATATT 1344
|||||||||||| |||||||||||||||| |||| || | | |||||||| |||||||
Sbjct 1175 GGGTTGCTAGAGCATGTGGATGGCAGAAGCTAGGCGCTTTTGTGAATCTTGGATCATATT 1234
Query 1345 ATCTTGTTGGAGTTCC-TTCAGGATTGTTACTTGCTTTTCACTTTCACGTTGGTGGTCGG 1403
||||||| |||||||| ||| || |||||||| | ||||||||||||||| |||||||||
Sbjct 1235 ATCTTGTCGGAGTTCCGTTC-GGTTTGTTACTCGGTTTTCACTTTCACGTCGGTGGTCGG 1293
Query 1404 GGGCTTTGGCTTGG-AATCATATGTGCCCTCGTTGTTCAAGTTTT-TGGTCTTGGCCTCG 1461
||||||||| |||| ||| |||||||| || || ||||||| | | || |||| ||||
Sbjct 1294 GGGCTTTGG-TTGGGAATTATATGTGCACTAGTCGTTCAAGGTGTATG-TCTTTCCCTCA 1351
Query 1462 TCAC-TATTTTTACAAATTGGGATGAAGAGG 1491
|||| | ||||||||||||||||||||||||
Sbjct 1352 TCACCT-TTTTTACAAATTGGGATGAAGAGG 1381
> Ahg328320 jgi|Araly1|328320|fgenesh1_pm.C_scaffold_7000547
Length=1404
Score = 867 bits (469), Expect = 0.0
Identities = 1068/1351 (79%), Gaps = 65/1351 (5%)
Strand=Plus/Plus
Query 172 AAAGTAGTGTCAAGGAAGAAGTGAAGAAGCAGCTATGGCTTTCAGGC-CCACTCATCGCC 230
||| ||||||||||||||| |||||||||||| | ||||| || || |||||||||| |
Sbjct 9 AAA-TAGTGTCAAGGAAGAGGTGAAGAAGCAGTTTTGGCTCTC-TGCTCCACTCATCGGC 66
Query 231 GTGAGTCTTCTTCAGTTTTGTCTACAAGTTATCTCCGTCATGTTCGTTGGCCATCTTGGC 290
|| || || || || | || ||| ||||||||||||||||||||||| |||||||| |||
Sbjct 67 GTCAGCCTCCTCCAATATTCTCTCCAAGTTATCTCCGTCATGTTCGTCGGCCATCTCGGC 126
Query 291 TCTCTTCCTCTCTCCGCCGCATCCATCGCCACCTCTTTCGCCTCCGTCACCGGTTTCAGC 350
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
Sbjct 127 TCTCTTCCTCTCTCCGCCGCCTCCATCGCCACCTCTTTCGCCTCCGTCACCGGCTTCA-C 185
Query 351 -TTCCTCATGGGAACAGCAAGTGCGTTAGATACGCTTTGTGGCCAAGCGTACGGAGCAAA 409
||||| ||||| ||||| |||||||| || || |||||||| ||| | |||||||||||
Sbjct 186 TTTCCTGATGGGTACAGCGAGTGCGTTGGAGACACTTTGTGGGCAATCTTACGGAGCAAA 245
Query 410 GAAGTA-CGGAATGTTAGGAATACAAATGCAAAGAGCTATGTTTGTTCTTACAC-TAGC- 466
|| ||| |||| | |||| || ||||| |||||||||||||||| | | | || |
Sbjct 246 GATGTATGGGAA-GCTAGGCATTTTCATGCAGAGAGCTATGTTTGTTC-TGCTCATA-CT 302
Query 467 TTCTATTCCTCTCTCCATCATTTGGGCTAACACAGAGCACCTTCTCGTCTTCTTTGGA-C 525
||| ||||||||||| || ||||| | |||| ||| || |||||||||| | | | |
Sbjct 303 TTCAATTCCTCTCTCGATGGTTTGGTTTTACACTGAGGACATTCTCGTCTT-TGTCCACC 361
Query 526 AAAACAAATCCATTGCTACACTCGCTGGCTCCTACGCAAAATTCATGATCCCAAGCATCT 585
|| |||| ||||| || | ||| || ||||| ||||| | || ||||||||| |||||||
Sbjct 362 AAGACAAGTCCATAGCGAGACTTGCAGGCTCATACGCTAGATACATGATCCCTAGCATCT 421
Query 586 TCGCCTACG-GTCTTCTTCAATGCTTTAACAGGTTCTTGCAGGCCCAAAACAATGTGTTT 644
|||||||| | |||||||||||| | |||||||||||||| | ||||||||||||||
Sbjct 422 ACGCCTACGCG-CTTCTTCAATGCCTAAACAGGTTCTTGCAAACGCAAAACAATGTGTTC 480
Query 645 CCTGTGGTTT-TCTGCTCTGGAGTAACAACTTCTCTACATGTCCTCCTTTGTTGGGTCTT 703
||||| ||| | | ||||||| | || |||| ||| || || || ||||||||||||||
Sbjct 481 CCTGT-ATTTGTGTCCTCTGGAATCACTACTTGTCTTCACGTTCTTCTTTGTTGGGTCTT 539
Query 704 GGTTTTCAAATCTGGTTTAGGGTTTCA-AGGAGCTGCTCTTGCCAACTCCATTTCGTATT 762
|| | || ||||||||| || || |||||||||||||| | ||| | || ||||
Sbjct 540 CGTGTGGAAGTCTGGTTTA-GGACACAGGGGAGCTGCTCTTGCTATCTCTGTCTCTTATT 598
Query 763 GGCTTAATGTCGTTCTCTTGTTC-TGTTACGTCAAGTTTTC-GCCTTCTTGCTCACTAAC 820
|| | |||||| ||||| | || ||||| |||||||| || | |||||||||||| |||
Sbjct 599 GGGTCAATGTCATTCTCCT-CTCGTGTTATGTCAAGTTCTCAG-CTTCTTGCTCACAAAC 656
Query 821 TTGGACCGGTTTCTCTAAGGAGGC-TCTACGCGATAT-CCTCCCTTTTCTG-AGACTAGC 877
|||||| ||||||||||| ||| | | || || | || ||| ||||| || || || |
Sbjct 657 TTGGACTGGTTTCTCTAAAGAGTCTTTTA-GCCACATCCCT-GCTTTTATGAAG-CTCGG 713
Query 878 TGTTCCTTCTGCACTTATGGTCTGCTTAGAGATGTGGTCCTTTGAACTTTTAGTTCTCTT 937
| |||||||||| ||||||||||||||||| | ||||| ||||| ||||| ||||||||
Sbjct 714 TTTTCCTTCTGCGGTTATGGTCTGCTTAGAGCTCTGGTCGTTTGAGCTTTTGGTTCTCTT 773
Query 938 ATCAGGACTT-CTTCCAAACCCGGTTCTAGAAACTTCTGTTCTCTCAATCTGCCTTAATA 996
||||| ||| ||||| || |||||| |||||||||| ||| ||||||||||||||||
Sbjct 774 GTCAGG-CTTACTTCCCAATCCGGTTTTAGAAACTTCAACTCTTTCAATCTGCCTTAATA 832
Query 997 CATCAGGAACAATGTGGATGATCCCATTTGGTCTAAGTGGCGCTGCAAGCACGAGGATCT 1056
||||| ||| | ||||||||||| |||| || ||||| | ||||||||||||||||
Sbjct 833 CATCATTAACTGTCTGGATGATCCCGGTTGGCCTTGGTGGCACAGCAAGCACGAGGATCT 892
Query 1057 CAAATGAATTAGGAGC-GGGTAACCCGAAAGTG-GCTAAGCTTGCGGTGCGTGTGGTCAT 1114
| || || |||||||| ||| || || |||| | || ||||| || || |||||||| |
Sbjct 893 CGAACGAGTTAGGAGCAGGG-AATCCAAAAG-GCGCAAAGCTGGCTGTACGTGTGGT--T 948
Query 1115 -TTG-CATTGCAGTAGCAGAAAGTA-TAGTGATCGGATCAGTCTTGATATTGATAAGGAA 1171
| | || | ||| | ||| ||| || |||| ||||| || ||| | ||| ||||
Sbjct 949 GTAGCCACAGTAGTTGTAGAGGGTATTA-TGATTGGATCGGTTTTGTTGGCGATTCGGAA 1007
Query 1172 TATATGGGGATTA-GCTTAT-AGTAGTGAACTAGAAGT-AGTCAGCTACGTAGCCTCGAT 1228
|| || |||| || |||| | || || || | | |||| | ||| || ||||| |||||
Sbjct 1008 TAAATTGGGA-TATGCTT-TCAGCAGCGATCCAAAAGTCA-TCAAATATGTAGCATCGAT 1064
Query 1229 GATGCCAATTCTCGCCT-TAGGAAATTTTCTAGACAGTCTT-CAATGCGTTCTCTCAGGG 1286
||| |||||| ||| || ||| || || || ||| | || ||||||||||| ||||||
Sbjct 1065 GATACCAATTGTCG-CTGCAGGCAACTTCCTCGAC-GGATTCCAATGCGTTCTGTCAGGG 1122
Query 1287 GTTGCTAGAGGATGTGGATGGCAGAAGATAGGAGCAATCAT-T-AATCTTGGTTCATATT 1344
||||||||||||||||||||||||||||| ||||| | | | ||||| || |||||||
Sbjct 1123 GTTGCTAGAGGATGTGGATGGCAGAAGATTGGAGCT-TG-TGTGAATCTCGGCTCATATT 1180
Query 1345 ATCTTGTTGGAGTTCCT-TCAGGATTGTTACTTGCTTTTCACTTT-CACGTTGGTGGTCG 1402
|||| ||||||||||| | || || ||||| | ||| || ||| || ||||||||||
Sbjct 1181 ATCTAGTTGGAGTTCCACTGGGG-TTATTACTCGGTTTCCA-TTTACATTTTGGTGGTCG 1238
Query 1403 GGGGCTTTGGCTTGGAATCATATGTGCCCTCGTTGTTCAAGTTTT-TGGTCTTGGCC-TC 1460
||| ||||||||||||||| ||| ||| | ||||||||||| | | |||| || ||
Sbjct 1239 GGGCCTTTGGCTTGGAATCGTATCAGCCTTAGTTGTTCAAGTGCTGTC-TCTTT-CCATC 1296
Query 1461 GTCACTATTT-TTACAAATTGGGATGAAGAG 1490
|||| ||| ||||||| |||||| |||||
Sbjct 1297 ATCAC-ATTAGTTACAAACTGGGATAAAGAG 1326
> Ahg476510 jgi|Araly1|476510|fgenesh2_kg.2__1640__AT1G73700.1
Length=1604
Score = 773 bits (418), Expect = 0.0
Identities = 1073/1382 (78%), Gaps = 74/1382 (5%)
Strand=Plus/Plus
Query 178 GTGTCAAGGAAGAAGTGAAGAAGCAGCTATGGCTTTCAGGC-CCACTCATCGCCGTGAGT 236
|||| ||||| |||||||||||||||||||||||||| || |||||||| | || ||
Sbjct 68 GTGTGAAGGAGGAAGTGAAGAAGCAGCTATGGCTTTC-TGCACCACTCATTGGTGTTAGC 126
Query 237 CTTCTTCAGTTTTGTCTACAAGTTATCTCCGTCATGTTCGTTGGCCATCTTGGCTCTCTT 296
|||||||| | | ||| ||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 127 CTTCTTCAATACTCTCTCCAAGTCATCTCCGTCATGTTCGTCGGCCATCTCGGCTCTCTT 186
Query 297 CCTCTCTCCGCCGCATCCATCGCCACCTCTTTCGCCTCCGTCACCGGTTTCAGCTTCCTC 356
|| ||||| ||||| || ||||||||||| ||||||||||||||||| |||| |||||||
Sbjct 187 CCCCTCTCTGCCGCCTCTATCGCCACCTCCTTCGCCTCCGTCACCGGCTTCACCTTCCTC 246
Query 357 ATGGGAACAGCAAGTGCGTTAGATACGCTTTGTGGCCAAGCGTACGGAGC-AAAGAAGTA 415
|||||||||| ||||| || || || || |||||||||||||||||||| ||| | ||
Sbjct 247 TTGGGAACAGCGAGTGCATTGGAGACACTATGTGGCCAAGCGTACGGAGCAAAACTA-TA 305
Query 416 CGGAATGTTAGGAATACAAATGCAAAGAGCTATGTTTGTTCTTAC-ACTAGCT-TCTATT 473
||||| || || || |||||||| ||||| |||||||| ||| | | || || ||| ||
Sbjct 306 CGGAAAATTGGGCATCCAAATGCAGAGAGCAATGTTTGTACTT-CTAATA-CTCTCTGTT 363
Query 474 CCTCTCTCCATCATTTGGGCTAACACAGAGCACCTTCTCGTCTTCTTTGGA-CAAAACAA 532
|||||||| ||||||||||||||||| || || ||||||| || | | ||| ||||
Sbjct 364 CCTCTCTCAATCATTTGGGCTAACACCGAACAGATTCTCGTATT-GGTCCATCAAGACAA 422
Query 533 ATCCATTGCTACACTCGCTGGCTCCTACGCAAAATTCATGATCCCAAG-CATCTTCGCCT 591
|||||||| | | |||||||||||||| |||| ||||||||| || | |||||||||
Sbjct 423 GTCCATTGCAAGTGTTGCTGGCTCCTACGCTAAATACATGATCCCGAGTC-TCTTCGCCT 481
Query 592 ACGGTCTTCTTCAATGCTTTAACAGGTTCTTGCAGGCCCAAAACAATGTGTTTCCTGTGG 651
|||| || ||||||||| | |||||||||||||| || || |||||||| || |||||
Sbjct 482 ACGGACTACTTCAATGCATCAACAGGTTCTTGCAAGCGCAGAACAATGTCTTCCCTGT-C 540
Query 652 TTT-TCTGCTCTGG-AGTAACAACTTCTCTACATGTCCTCCTTTGTTGGGTCTTGGTTTT 709
||| |||||||||| | | || |||| ||| ||| | || || |||||| | || || ||
Sbjct 541 TTTGTCTGCTCTGGTA-TCACCACTTGTCTTCATTTACTTCTCTGTTGGTTGTTTGTCTT 599
Query 710 CAA-ATCTGGTTTAGGGTTTCA-AGGAGCTGCTCTTGCCAACTCCATTTCGTATTGGCTT 767
|| | |||||||| || | || ||| |||||||| || | ||| | || || ||| ||
Sbjct 600 GAAGA-CTGGTTTA-GGATACAGAGGGGCTGCTCTCGCTATCTCGGTCTCTTACTGG-TT 656
Query 768 -AATGTCGTTCTCTTGTTC-TGTTACGTCAAGTTTTCGCCTTCTTGCTCACTA-ACTTGG 824
|| ||| ||||| | || ||||| ||||||||||||||||||||||| | | | ||||
Sbjct 657 CAACGTCATTCTCCT-CTCATGTTATGTCAAGTTTTCGCCTTCTTGCTCGC-ATAGTTGG 714
Query 825 ACC-GGTTTCTCTAAGGAGGCTCTACGCG-A-TATCCTCCCTTT-TCTGAGACTAGCTGT 880
||| ||||| || ||||||||| | | | | | | | ||| ||| | | | ||| |
Sbjct 715 ACCGGGTTT-TCAAAGGAGGCTTTTCAAGAACT-TTAT-GATTTCTCT-AAAATTGCTTT 770
Query 881 TCCTTCTGCACTTATGGTCTGCTTAGAGATGTGGTCCTTTGAACTTTTAGTTCTCT-TAT 939
|||||| ||| | |||||||| || ||| | |||||||| || ||| | ||||| | |
Sbjct 771 TCCTTCAGCAGTCATGGTCTGTTTGGAGCTTTGGTCCTTCGAGCTTCTGGTTCT-TGCCT 829
Query 940 CAGGACTTCTTCCAAACCCGGTTCTAGAAACTTCTGTTCTCTCAATCTGCCTTAATACAT 999
|||| |||||||| || |||||| |||||||||| || || |||||||| || ||||| |
Sbjct 830 CAGGCCTTCTTCCTAATCCGGTTTTAGAAACTTCGGTGCTTTCAATCTGTCTAAATACTT 889
Query 1000 CAGGAACAATGTGG-ATGATCCCATTTGGTCTAAGTGGCGCTGCAAGCACGAGGA-TCTC 1057
|| |||||| ||| | |||| | ||||||| |||| ||||| |||| | || ||||
Sbjct 890 CACTAACAATCTGGCA-GATCTCGGTTGGTCTTGGTGGTGCTGCGAGCA-TAAGAGTCTC 947
Query 1058 AAATGAATTAGGAGC-GGGTAACCCGA-AAGTGGCTAAGCTTGCGGTGCGTGTGGTCATT 1115
||||| |||||||| ||| || || | ||||||| || | || | || | | ||||||
Sbjct 948 GAATGAGTTAGGAGCAGGG-AATCC-ACAAGTGGCAAAAC-TG-GCTGTATAT-GTCATT 1002
Query 1116 -T--GCATTGCAGTAGCAGAAAGTATAGTGATCGG-ATCAGTCTTGATATTGATAAGGAA 1171
| |||| ||||| || || | || ||| | || | | || ||| | | ||| | ||
Sbjct 1003 GTAGGCATAGCAGTTGCCGAGGGAATTGTGGT-GGTAACGGTTTTGTTGTCGATTCGAAA 1061
Query 1172 TATATGGGGATTA-GCTTATAGTAGTGAACTAG-AAGT-AGTCAGC-TACGTAGCCTCGA 1227
|| | || | | |||| ||| |||| || | || | | || || || | || || |
Sbjct 1062 GATCTTAGG-TCACGCTTTTAGCAGTG-ACCCGAAAATCA-TC-GCATATGCCGCATCAA 1117
Query 1228 TGATGCCAATTCTCGCCT-TAGGAAATTTTCTAGACAGTCTTCAATGCGTTCTCTCAGGG 1286
|||| ||||| | || | | ||||| ||||| || | || ||||| ||||||||||||
Sbjct 1118 TGATACCAATAGTTGCATGT-GGAAACTTTCTTGATGGCCTCCAATGTGTTCTCTCAGGG 1176
Query 1287 GTTGCTAGAGGATGTGGATGGCAGAAGATAGGAGCAATCAT-T-AATCTTGGTTCATATT 1344
|||||||||||||||||||||||||| || ||||| | | | |||||||| |||||||
Sbjct 1177 GTTGCTAGAGGATGTGGATGGCAGAAAATTGGAGCG-TG-TGTGAATCTTGGATCATATT 1234
Query 1345 ATCTTGTTGGAGTTCC-TTCAGGATTGTTACTTGCTTTTCACTTTC-ACGTTGGTGGTCG 1402
|||||||||||||||| || |||||| ||||||| ||| || |||| || ||||||||||
Sbjct 1235 ATCTTGTTGGAGTTCCATT-AGGATTATTACTTGGTTTCCA-TTTCCACATTGGTGGTCG 1292
Query 1403 GGGGCTTTGGCTTGGAATCATATGTGCCCTCGTTGTTCAAGTTTT-TGGTCTTGGCCTC- 1460
|||||||||||| |||||| || || | | |||||| || || || |||| |||
Sbjct 1293 GGGGCTTTGGCTGGGAATCGTAACAGCATTGGCTGTTCAGGTGTTGTG-TCTTT-CCTTA 1350
Query 1461 GTCACTATTTTTACAAATTGGGATGAAGAGGCCAAGAAAGCTACAAACAGAATTGAGTCT 1520
|||||||| || ||||| |||||| ||||||| ||||||||||| |||||| | | ||||
Sbjct 1351 GTCACTATATTCACAAACTGGGATAAAGAGGCAAAGAAAGCTACGAACAGAGTCGGGTCT 1410
Query 1521 TC 1522
||
Sbjct 1411 TC 1412
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64448694540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5