BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G52460.1 Length=1110 Score E Sequences producing significant alignments: (Bits) Value Ahg495315 jgi|Araly1|495315|fgenesh2_kg.8__1131__AT5G52460.1 638 0.0 > Ahg495315 jgi|Araly1|495315|fgenesh2_kg.8__1131__AT5G52460.1 Length=1017 Score = 638 bits (345), Expect = 0.0 Identities = 446/490 (91%), Gaps = 25/490 (5%) Strand=Plus/Plus Query 539 ATAAGCTTCGCCTTGAAAAGCCACATATCGACGTTGTATGTCATACTGATGACAAGTTTC 598 ||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 503 ATAAGCTTCGCTTTGGAAAGCCACATATCGACATTGTATGTCATACTGATGACAAGTTTC 562 Query 599 TCAAAGCTATTTCCTTGGTCACGTATC-T-TG-TGTTACCTTTGGAAGATCCAATGGCTC 655 |||||||||||||||||||||||| || | || ||||||||||||||||||||||||||| Sbjct 563 TCAAAGCTATTTCCTTGGTCACGTTTCTTGTGTTGTTACCTTTGGAAGATCCAATGGCTC 622 Query 656 TGGATTTTCGTGGCTTTACCTTCACTCGACTTGGAAAA-TTAGTGATATGTCCACATGGC 714 |||||||| |||||||||||||| |||||||| ||||| ||||||||||| |||| Sbjct 623 TGGATTTTAGTGGCTTTACCTTCTCTCGACTT-GAAAAGTTAGTGATATG------TGGC 675 Query 715 CATCTCTGGTTGGATATAATTCCACTAATTCTCAACAACTCTCCTAAACTAAGAT-TTCT 773 | | |||||||||||||| |||||||||||||||||||||||||||||||||| | |||| Sbjct 676 CGTATCTGGTTGGATATACTTCCACTAATTCTCAACAACTCTCCTAAACTAAG-TGTTCT 734 Query 774 TGCTATCACTTCTGTAA-TGGATATCGACCCGGAAATCTCCCATTGTCATGGTACCAACC 832 ||||||| ||||||||| |||||||| |||||||||||||||| |||||||| |||||| Sbjct 735 TGCTATCGCTTCTGTAAGTGGATATCTACCCGGAAATCTCCCAACGTCATGGTCCCAACC 794 Query 833 AAGGTACTGTTCCCAGATGCTTGTCGGCTCATTTAGATGAGGAGTTTGTGTGGCATGGAT 892 || || ||||||||||||||||||||||||||| | ||||||||| |||||||||||| Sbjct 795 AA-GTTTTGTTCCCAGATGCTTGTCGGCTCATTT--A-GAGGAGTTTTTGTGGCATGGAT 850 Query 893 ATAGAGGAAACGAAGAAGAGACACAGCTCATAAGATACATTTTTGCTAATGCAAAGTGTT 952 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 851 ATAGAGGAAACGAAGAAGAGACACAGCTCATAAGATACATTTTTGCTAATGCAAAGTGTT 910 Query 953 TAAAGAAAGTGACAGTCACATCTATATGGGAACATTTTCAA-T--C----TTCAATCTTG 1005 ||||||||||||||||||||| ||||||||||||| ||||| | | |||||||||| Sbjct 911 TAAAGAAAGTGACAGTCACATTTATATGGGAACATATTCAAATATCCGCCTTCAATCTTG 970 Query 1006 AAGAGAGAGA 1015 |||||||||| Sbjct 971 AAGAGAGAGA 980 Score = 424 bits (229), Expect = 1e-117 Identities = 259/274 (95%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 214 GATGTTGGGAAATTAGTTGCAAATGCAGTTGATCGCTTTGTGCGCAAGCTAGAGTTAGAG 273 ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 151 GATGTTGGGAAATTAGTTGCAAATGTAGTTGATCGCTTTGTGCGCAAGCTAGAGCTAGAG 210 Query 274 CTCCACTGGACGGCAGAGCCTACCAGCTTGCCTAAGAGTCTTTACACATGCAAAACACTT 333 |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||| Sbjct 211 CTCCACTGGACGGCAGAGCCTAGCAGCTTGCCTAAGAATCTTTACACATGCAAAATGCTT 270 Query 334 GTGGAATTGACTCTTTCGGACAAGATTATAGTGGATGTTCCTTCTTCGGTTTGCCTCCCG 393 |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 271 GTGGAATTGACTCTTTCGGACAAGATTATAGTGGATGTTCCTTCTTCGATTTGTCTCCCG 330 Query 394 TCACTCAACATATTACGCCTTTTTTATGTGGTGTTCAAAGATGAAAATTCTCTAGAGAGG 453 |||||||| ||||| ||||||||| |||| ||||||||||||||| ||||||| |||||| Sbjct 331 TCACTCAATATATTGCGCCTTTTTCATGTTGTGTTCAAAGATGAAGATTCTCTCGAGAGG 390 Query 454 CTTATATCAAGTTGCTCAGTTCTTGCCCGATCGA 487 |||||||||||||||||||||||||| ||||||| Sbjct 391 CTTATATCAAGTTGCTCAGTTCTTGCTCGATCGA 424 Score = 165 bits (89), Expect = 6e-40 Identities = 97/101 (96%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 5 CCGAACGTTGTCAAAGAATTGATGAAGAGGTTGTTGCTTCTAGAGACGAGATCAGTTCGT 64 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || Sbjct 2 CCGAACGTTGTCAAAGAATTGATGAAGAGGTTGTTGCTTCTAAAGACGAGATCAATTTGT 61 Query 65 TGCCCGACGATTTGCTTATCCAGATTTTGTTGCTTGTACCG 105 |||||||||||||||| |||||||||||||||||||||||| Sbjct 62 TGCCCGACGATTTGCTCATCCAGATTTTGTTGCTTGTACCG 102 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41363364945 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5