BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52460.1
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495315 jgi|Araly1|495315|fgenesh2_kg.8__1131__AT5G52460.1 638 0.0
> Ahg495315 jgi|Araly1|495315|fgenesh2_kg.8__1131__AT5G52460.1
Length=1017
Score = 638 bits (345), Expect = 0.0
Identities = 446/490 (91%), Gaps = 25/490 (5%)
Strand=Plus/Plus
Query 539 ATAAGCTTCGCCTTGAAAAGCCACATATCGACGTTGTATGTCATACTGATGACAAGTTTC 598
||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 503 ATAAGCTTCGCTTTGGAAAGCCACATATCGACATTGTATGTCATACTGATGACAAGTTTC 562
Query 599 TCAAAGCTATTTCCTTGGTCACGTATC-T-TG-TGTTACCTTTGGAAGATCCAATGGCTC 655
|||||||||||||||||||||||| || | || |||||||||||||||||||||||||||
Sbjct 563 TCAAAGCTATTTCCTTGGTCACGTTTCTTGTGTTGTTACCTTTGGAAGATCCAATGGCTC 622
Query 656 TGGATTTTCGTGGCTTTACCTTCACTCGACTTGGAAAA-TTAGTGATATGTCCACATGGC 714
|||||||| |||||||||||||| |||||||| ||||| ||||||||||| ||||
Sbjct 623 TGGATTTTAGTGGCTTTACCTTCTCTCGACTT-GAAAAGTTAGTGATATG------TGGC 675
Query 715 CATCTCTGGTTGGATATAATTCCACTAATTCTCAACAACTCTCCTAAACTAAGAT-TTCT 773
| | |||||||||||||| |||||||||||||||||||||||||||||||||| | ||||
Sbjct 676 CGTATCTGGTTGGATATACTTCCACTAATTCTCAACAACTCTCCTAAACTAAG-TGTTCT 734
Query 774 TGCTATCACTTCTGTAA-TGGATATCGACCCGGAAATCTCCCATTGTCATGGTACCAACC 832
||||||| ||||||||| |||||||| |||||||||||||||| |||||||| ||||||
Sbjct 735 TGCTATCGCTTCTGTAAGTGGATATCTACCCGGAAATCTCCCAACGTCATGGTCCCAACC 794
Query 833 AAGGTACTGTTCCCAGATGCTTGTCGGCTCATTTAGATGAGGAGTTTGTGTGGCATGGAT 892
|| || ||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct 795 AA-GTTTTGTTCCCAGATGCTTGTCGGCTCATTT--A-GAGGAGTTTTTGTGGCATGGAT 850
Query 893 ATAGAGGAAACGAAGAAGAGACACAGCTCATAAGATACATTTTTGCTAATGCAAAGTGTT 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 ATAGAGGAAACGAAGAAGAGACACAGCTCATAAGATACATTTTTGCTAATGCAAAGTGTT 910
Query 953 TAAAGAAAGTGACAGTCACATCTATATGGGAACATTTTCAA-T--C----TTCAATCTTG 1005
||||||||||||||||||||| ||||||||||||| ||||| | | ||||||||||
Sbjct 911 TAAAGAAAGTGACAGTCACATTTATATGGGAACATATTCAAATATCCGCCTTCAATCTTG 970
Query 1006 AAGAGAGAGA 1015
||||||||||
Sbjct 971 AAGAGAGAGA 980
Score = 424 bits (229), Expect = 1e-117
Identities = 259/274 (95%), Gaps = 0/274 (0%)
Strand=Plus/Plus
Query 214 GATGTTGGGAAATTAGTTGCAAATGCAGTTGATCGCTTTGTGCGCAAGCTAGAGTTAGAG 273
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 151 GATGTTGGGAAATTAGTTGCAAATGTAGTTGATCGCTTTGTGCGCAAGCTAGAGCTAGAG 210
Query 274 CTCCACTGGACGGCAGAGCCTACCAGCTTGCCTAAGAGTCTTTACACATGCAAAACACTT 333
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 211 CTCCACTGGACGGCAGAGCCTAGCAGCTTGCCTAAGAATCTTTACACATGCAAAATGCTT 270
Query 334 GTGGAATTGACTCTTTCGGACAAGATTATAGTGGATGTTCCTTCTTCGGTTTGCCTCCCG 393
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 271 GTGGAATTGACTCTTTCGGACAAGATTATAGTGGATGTTCCTTCTTCGATTTGTCTCCCG 330
Query 394 TCACTCAACATATTACGCCTTTTTTATGTGGTGTTCAAAGATGAAAATTCTCTAGAGAGG 453
|||||||| ||||| ||||||||| |||| ||||||||||||||| ||||||| ||||||
Sbjct 331 TCACTCAATATATTGCGCCTTTTTCATGTTGTGTTCAAAGATGAAGATTCTCTCGAGAGG 390
Query 454 CTTATATCAAGTTGCTCAGTTCTTGCCCGATCGA 487
|||||||||||||||||||||||||| |||||||
Sbjct 391 CTTATATCAAGTTGCTCAGTTCTTGCTCGATCGA 424
Score = 165 bits (89), Expect = 6e-40
Identities = 97/101 (96%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 5 CCGAACGTTGTCAAAGAATTGATGAAGAGGTTGTTGCTTCTAGAGACGAGATCAGTTCGT 64
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 2 CCGAACGTTGTCAAAGAATTGATGAAGAGGTTGTTGCTTCTAAAGACGAGATCAATTTGT 61
Query 65 TGCCCGACGATTTGCTTATCCAGATTTTGTTGCTTGTACCG 105
|||||||||||||||| ||||||||||||||||||||||||
Sbjct 62 TGCCCGACGATTTGCTCATCCAGATTTTGTTGCTTGTACCG 102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41363364945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5