BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52470.1
Length=1225
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495317 jgi|Araly1|495317|fgenesh2_kg.8__1133__AT5G52470.1 1613 0.0
Ahg492264 jgi|Araly1|492264|fgenesh2_kg.7__1697__AT4G25630.1 852 0.0
> Ahg495317 jgi|Araly1|495317|fgenesh2_kg.8__1133__AT5G52470.1
Length=1104
Score = 1613 bits (873), Expect = 0.0
Identities = 980/1032 (95%), Gaps = 5/1032 (0%)
Strand=Plus/Plus
Query 16 AAAATCAGCCACCACCGCACATCTCTCTCCTTTGCCCTCGttttttttCGGTTCTCGTCT 75
|||||| ||||||||||||||||||| ||||||||| ||| |||||||||||||||||||
Sbjct 1 AAAATCCGCCACCACCGCACATCTCTTTCCTTTGCCTTCG-TTTTTTTCGGTTCTCGTCT 59
Query 76 TTCGTTCTTCACTTTTAGACAAGCAAATATGAGACCCCCAGTTACaggaggacgtggtgg 135
||||||||||||||||| || |||||||||||||| ||| |||||||||||||||||||
Sbjct 60 TTCGTTCTTCACTTTTA-ACTCGCAAATATGAGACCACCACTTACAGGAGGACGTGGTGG 118
Query 136 tggaggattcagaggtggaagagatggtggtggaagaggttttggaggtggaagaagCTT 195
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TGGAGGATTCAGAGGAGGAAGAGATGGTGGTGGAAGAGGTTTTGGAGGTGGAAGAAGCTT 178
Query 196 TGGAGGAGGCCGTAGTGGTGACAGAGGCCGTAGTGGGCCTCGCGGCAGAGGACGTGGTGC 255
||||||||| | |||| |||||||| ||| |||| |||||||||||||||||||||||
Sbjct 179 TGGAGGAGG--G-CGTGGCGACAGAGGACGTGGTGGTCCTCGCGGCAGAGGACGTGGTGC 235
Query 256 GCCTCGTGGTCGTGGAGGACCACCTCGTGGAGGAATGAAAGGAGGAAGCAAAGTGATTGT 315
||||||||| | ||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 236 GCCTCGTGGAAGAGGAGGACCACCACGTGGAGGAATGAAAGGAGGAAGCAAAGTGCTTGT 295
Query 316 TGAGCCTCACAGACATGCGGGAGTGTTTATTGCTAAGGGTAAAGAAGATGCTCTTGTCAC 375
||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 296 TGAGCCTCACAGACACGCAGGAGTGTTTATTGCTAAGGGTAAAGAAGATGCTCTTGTTAC 355
Query 376 TAAGAATTTGGTTCCTGGTGAAGCTGTTTACAATGAGAAGAGAATCTCTGTTCAGAATGA 435
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 356 TAAGAATTTGGTTCCTGGTGAAGCTGTTTACAATGAGAAGAGGATCTCTGTTCAGAATGA 415
Query 436 AGATGGAACTAAGGTTGAATACAGAGTTTGGAATCCGTTTAGATCTAAGTTAGCTGCTGC 495
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 416 AGATGGAACTAAGATTGAATACAGAGTTTGGAATCCTTTTAGATCTAAGTTAGCTGCTGC 475
Query 496 AATTCTTGGTGGTGTCGACAACATTTGGATCAAACCTGGTGCCAAAGTTCTTTACTTGGG 555
||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 476 AATTCTTGGTGGTGTTGATAACATTTGGATCAAACCTGGTGCTAAAGTTCTTTACTTGGG 535
Query 556 TGCTGCTTCTGGGACCACTGTCTCTCATGTTTCTGACCTCGTTGGCCCTGAGGGATGTGT 615
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 536 TGCTGCTTCTGGAACCACTGTCTCTCATGTTTCTGACCTTGTTGGCCCTGAGGGATGTGT 595
Query 616 TTATGCTGTTGAGTTTTCTCATAGAAGTGGTAGAGATTTGGTGAACATGGCCAAGAAGAG 675
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 596 TTATGCTGTTGAGTTTTCTCATAGAAGTGGTAGAGATTTGGTGAACATGGCAAAGAAGAG 655
Query 676 AACTAACGTTATTCCAATCATTGAAGATGCTAGACATCCGGCTAAGTACAGAATGCTCGT 735
|||||| |||||||||||||| |||||||||||||| || ||||||||||||||||| ||
Sbjct 656 AACTAATGTTATTCCAATCATCGAAGATGCTAGACACCCTGCTAAGTACAGAATGCTTGT 715
Query 736 GGGCATGGTTGATGTCATATTCTCTGATGTTGCTCAGCCAGATCAGGCAAGAATCTTGGC 795
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GGGCATGGTTGATGTCATATTCTCTGATGTTGCTCAGCCAGATCAGGCAAGAATCTTGGG 775
Query 796 CCTGAATGCCTCATTTTTCCTCAAAACTGGTGGACACTTTGTTATCTCAATCAAGGCCAA 855
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CCTCAATGCCTCATTTTTCCTCAAAACTGGTGGACACTTTGTTATCTCAATCAAGGCCAA 835
Query 856 CTGTATCGACTCTACAGTTGCAGCAGAAGCAGTCTTCCAGAGCGAGGTGAAGAAGCTGCA 915
||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 836 CTGTATCGACTCTACGGTTGCAGCAGAAGCAGTGTTCCAGAGTGAGGTGAAGAAGCTGCA 895
Query 916 ACAAGAGCAGTTTAAGCCAGCAGAACAGGTGACTCTCGAGCCGTTTGAGCGTGACCATGC 975
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 896 ACAGGAGCAGTTTAAGCCAGCAGAACAGGTGACTCTAGAGCCGTTTGAGCGTGACCATGC 955
Query 976 CTGTGTTGTTGGTGGTTACCGCATGCCGAAGAAACAAAAGACCCCAGCCTCATAGAGGAA 1035
||||||||||||||||||||||||||| |||||||||||| | |||||| ||||||| ||
Sbjct 956 CTGTGTTGTTGGTGGTTACCGCATGCCTAAGAAACAAAAGGCTCCAGCCACATAGAGCAA 1015
Query 1036 CTGTGGACAGTA 1047
||||||||||||
Sbjct 1016 CTGTGGACAGTA 1027
> Ahg492264 jgi|Araly1|492264|fgenesh2_kg.7__1697__AT4G25630.1
Length=1206
Score = 852 bits (461), Expect = 0.0
Identities = 651/744 (88%), Gaps = 7/744 (1%)
Strand=Plus/Plus
Query 270 GAGGACCACC---TCGTGGAGGAATGAAAGGAGGAAGCAAAGTGATTGTTGAGCCTCACA 326
|||||||||| |||||||| ||||||||||||||||||||| |||| || |||||||
Sbjct 293 GAGGACCACCAGGCCGTGGAGGCATGAAAGGAGGAAGCAAAGTGCTTGTGGAACCTCACA 352
Query 327 GACATGCGGGAGTGTTTATTGCTAAGGGTAAAGAAGATGCTCTTGTCACTAAGAATTTGG 386
|||| || |||||||| ||||| ||||||||||||||||||||||| || ||||| ||||
Sbjct 353 GACACGCAGGAGTGTTCATTGCAAAGGGTAAAGAAGATGCTCTTGTTACCAAGAACTTGG 412
Query 387 TTCCTGGTGAAGCTGTTTACAATGAGAAGAGAATCTCTGTTCAGAATGAAGATGGAACTA 446
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 413 TTCCTGGTGAAGCTGTCTACAATGAGAAGAGAATCTCTGTTCAGAACGAAGATGGAACTA 472
Query 447 AGGTTGAATACAGAGTTTGGAATCCGTTTA-GATCTAAGTTAGCTGCTGCAATTCTTGGT 505
||||||||||||||||||||||||| ||| | |||||||| || ||||| ||||| ||
Sbjct 473 AGGTTGAATACAGAGTTTGGAATCC-TTTCCGTTCTAAGTTGGCAGCTGCTATTCTCGGC 531
Query 506 GGTGTCGACAACATTTGGATCAAACCTGGTGCCAAAGTTCTTTAC-TTGGGTGCTGCTTC 564
||||| || ||||| ||||| ||||||||||| |||||||| ||| |||| |||||||||
Sbjct 532 GGTGTTGATAACATCTGGATTAAACCTGGTGCTAAAGTTCTATACCTTGG-TGCTGCTTC 590
Query 565 TGGGACCACTGTCTCTCATGTTTCTGACCTCGTTGGCCCTGAGGGATGTGTTTATGCTGT 624
||| ||||| ||||||||||| ||||| || |||||||||||||||||||| || || ||
Sbjct 591 TGGAACCACAGTCTCTCATGTGTCTGATCTTGTTGGCCCTGAGGGATGTGTGTACGCGGT 650
Query 625 TGAGTTTTCTCATAGAAGTGGTAGAGATTTGGTGAACATGGCCAAGAAGAGAACTAACGT 684
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 651 TGAGTTTTCTCATAGAAGTGGTAGAGATTTGGTGAACATGGCAAAGAAGAGAACCAATGT 710
Query 685 TATTCCAATCATTGAAGATGCTAGACATCCGGCTAAGTACAGAATGCTCGTGGGCATGGT 744
|||||||||||| || ||||||||||| || ||||| ||||||||||| || ||||||||
Sbjct 711 TATTCCAATCATCGAGGATGCTAGACACCCTGCTAAATACAGAATGCTTGTAGGCATGGT 770
Query 745 TGATGTCATATTCTCTGATGTTGCTCAGCCAGATCAGGCAAGAATCTTGGCCCTGAATGC 804
|||||| || |||||||||||||| |||||||||||||| || ||||||| |||||||
Sbjct 771 TGATGTTATCTTCTCTGATGTTGCCCAGCCAGATCAGGCTAGGATCTTGGGTTTGAATGC 830
Query 805 CTCATTTTTCCTCAAAACTGGTGGACACTTTGTTATCTCAATCAAGGCCAACTGTATCGA 864
|||| ||||||||| | || ||||||||||| |||||||||||||| |||||||| ||
Sbjct 831 ATCATACTTCCTCAAATCAGGAGGACACTTTGTGATCTCAATCAAGGCAAACTGTATTGA 890
Query 865 CTCTACAGTTGCAGCAGAAGCAGTCTTCCAGAGCGAGGTGAAGAAGCTGCAACAAGAGCA 924
||| || ||| |||||||||| || ||||||| || ||||||||||| ||||| |||||
Sbjct 891 CTCAACGGTTCCAGCAGAAGCTGTGTTCCAGAATGAAGTGAAGAAGCTTCAACAGGAGCA 950
Query 925 GTTTAAGCCAGCAGAACAGGTGACTCTCGAGCCGTTTGAGCGTGACCATGCCTGTGTTGT 984
|| |||||||| || || ||||| || ||||| || |||||||| ||||||||||| ||
Sbjct 951 ATTCAAGCCAGCTGAGCAAGTGACACTTGAGCCATTCGAGCGTGATCATGCCTGTGTCGT 1010
Query 985 TGGTGGTTACCGCATGCCGAAGAA 1008
|||||| ||||| ||||| |||||
Sbjct 1011 TGGTGGCTACCGTATGCCTAAGAA 1034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45747500400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5