BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52480.1
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331617 jgi|Araly1|331617|fgenesh1_pm.C_scaffold_8000960 667 0.0
Ahg943323 jgi|Araly1|943323|scaffold_603867.1 344 6e-94
Ahg943324 jgi|Araly1|943324|scaffold_603868.1 156 3e-37
Ahg333289 jgi|Araly1|333289|fgenesh1_pm.C_scaffold_320000002 126 2e-28
> Ahg331617 jgi|Araly1|331617|fgenesh1_pm.C_scaffold_8000960
Length=621
Score = 667 bits (361), Expect = 0.0
Identities = 549/634 (87%), Gaps = 36/634 (6%)
Strand=Plus/Plus
Query 128 TGGTGAACAATCCTGAGGCGATATGTCGTAACGCCGTTGATCGTAGCGAGGGTGGCTTGC 187
|||||||| || |||||| ||||||||| | |||||||| |||||| ||||||||||||
Sbjct 2 TGGTGAACGATGTTGAGGCCATATGTCGTCATGCCGTTGACCGTAGCCAGGGTGGCTTGC 61
Query 188 TGGAGATCAACATTGGGGACTTCGGGAGTGATTCTCTCCTTACATACATCGCGGAGAGGT 247
| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 62 TTGAGATCAACATTGGGGACTTCGGGAGTGATTCTCTCCTTACCTACATCGCCGAGAGGT 121
Query 248 CAAGTAATCTTAGAAGCCTTAGACT---AATGTGCTCAGAAATAACAGACGATGGATTTG 304
|||||||||||| ||||||| |||| ||||||||| ||||||||||| || |||||||
Sbjct 122 CAAGTAATCTTAAAAGCCTTGGACTCGCAATGTGCTCTGAAATAACAGAGGAGGGATTTG 181
Query 305 TTCAAGCAGTTGTGAAACTTCCAATGCTTGAAGAGCTTGAGGTTTCAGGAATATCATTGT 364
||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 182 TTCAAGCAGTTGTGAAACTTCCAATGCTTGAAGAGCTTGAGGTATCAGGAATGTTATTGT 241
Query 365 CAGGAGAGTCTATGAAACTTGCAGGGCTGTCTTGTCCAAATCTGAAGACATTGATGCTAA 424
||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 242 CAGGAGAGTCTTTGAAACTTGCAGGGCTGTCTTGTCCAAATCTGAAGTCATTGAAACTAA 301
Query 425 ACCGCCTCTTTTACTTAAGTTCGGATGATGATGATCATGATGCCATAGCAATTGCAGAAA 484
|||||||||||||||||| ||| | | ||||||| | |||||||||||||||||||||
Sbjct 302 ACCGCCTCTTTTACTTAAATTC-TA-G-TGATGATGTTAATGCCATAGCAATTGCAGAAA 358
Query 485 GCATGCCTAAACTACGCCATCTCCAGCTTTGTGGGAACAA-ACTAACCAAAACAGGCTTA 543
||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||
Sbjct 359 GCATGCCTAAACTACGCCATCTCCAGCTTTGTGGGGA-AACACTAACCAAAACAGGCTTA 417
Query 544 AACGCCATTCTTGACGGTTGTCCTCACCTGGAACACCTCGATTTACGCCAATGTATCAAC 603
||||||||||||||| ||||||||||| |||||||||||||||| ||||||||| |||||
Sbjct 418 AACGCCATTCTTGACAGTTGTCCTCACATGGAACACCTCGATTTGCGCCAATGTTTCAAC 477
Query 604 CTT--G-T--C-GGGAATCTAGAGAAGCGTTGTTTTGAGAAAATTAAAGATTTGAGACGC 657
||| | | | |||||||||| |||||||| | | || |||||||||| |
Sbjct 478 CTTAAGCTTGCCGGGAATCTAGCGAAGCGTT-TC---A-AA-------GATTTGAGACTC 525
Query 658 -CACAATGATTCTACCTCTGCTGATTACCCGTTTTCTTTTGAAACT-TACTATTTT-CAT 714
| ||||||||| ||||||| ||| ||||||| || || |||| | | ||||| |||
Sbjct 526 TC-CAATGATTCAACCTCTGATGA---CCCGTTTGGTTATGCAACTAT-C-ATTTTTCAT 579
Query 715 TGGTCACGCCAATTGGCAATACTTAAA-AATGCG 747
| | ||| ||||||| || |||| ||| || |||
Sbjct 580 TTGCCACACCAATTGACATTACTGAAAGAAGGCG 613
> Ahg943323 jgi|Araly1|943323|scaffold_603867.1
Length=1876
Score = 344 bits (186), Expect = 6e-94
Identities = 532/693 (77%), Gaps = 47/693 (7%)
Strand=Plus/Plus
Query 15 TGAGATACTGGAGAACGCTCAGAAAGTGTGTAGATCGTGACGAT-ATGTTTGTAAAGACC 73
||| |||||||| || ||||| |||||||| |||||||| || | |||||||||||||
Sbjct 1118 TGATATACTGGAAAATGCTCAAAAAGTGTGCAGATCGTGGCG-TCGCGTTTGTAAAGACC 1176
Query 74 CATCCATATGGCGTAAAATCGACAT-G-CGAATCT-TGAGTTAC-AACAAACCAGTACTG 129
| || || ||||| || || ||||| | | || || ||| || | || | ||
Sbjct 1177 CCTCGATGTGGCGGAAGATTGACATGGAC-AACCTCGGAG--ACTTGGGAGCC---A-TG 1229
Query 130 GTGAACAATCCTGAG-GCGATATGTCGTAACGCCGTTGATCGTAGCGAGGGTGGCTTGCT 188
| | || ||| |||| | || |||||| | || || ||||||||| |||| |||||| |
Sbjct 1230 GGGTACGATCTTGAGATC-ATGTGTCGTCATGCAGTAGATCGTAGCCAGGGCGGCTTGGT 1288
Query 189 GGAGATCAACATTGGGGACTTCGGGAGTGATTCTCTCCTTACA-TACATCGCGGAGAGGT 247
||||| || || || ||||||| | |||| ||||| | | ||||| || || ||||
Sbjct 1289 TGAGATTGACGTTTGGTACTTCGGTACTGATGAACTCCTCA-ATTACATTGCCGACAGGT 1347
Query 248 CAAGTAATCTTAGAAGCCTTAGAC---TAATGTGCTCA-GAAATAACAGACGATGGATTT 303
| |||||||| |||| |||||||| ||||||||| | |||| ||||||| ||||||
Sbjct 1348 CGAGTAATCTGAGAACCCTTAGACTTATAATGTGCT-ATCCAATAGCAGACGAAGGATTT 1406
Query 304 GTTC-AAGCAGTTGTGAAACTTCCAATGCTTGAAGAGCTTGAGGTTTCAGGAAT-ATCAT 361
|| ||||||||||||| |||||| || ||||| | || ||| ||||| | | || |
Sbjct 1407 -ATCGAAGCAGTTGTGAAGCTTCCATTGATTGAATACCTCGAGCTTTCA-CACTGCTCCT 1464
Query 362 TGTCAGGAGAGTCTATGAAACTTGCAGGGCTGTCTTGTCCAAATCTGAAGACATTGATGC 421
|||||||||||||| ||||| ||| ||| | |||||||||||||||||||||||||| ||
Sbjct 1465 TGTCAGGAGAGTCTCTGAAAGTTGTAGGTCAGTCTTGTCCAAATCTGAAGACATTGAAGC 1524
Query 422 TAAA--CC--GCCT---CTTTTACTTAAGTTCGGATGA---TGATGATCATGATGC-CAT 470
|||| || |||| | | |||| | ||||| | || || | ||||| | |
Sbjct 1525 TAAACTCCGAGCCTGACCCCAAATTTAA-TGATGATGAGTTTAATAATGAAGATGCTC-T 1582
Query 471 AGCAATTGCAGAAAGCATGCCTAAACTACGCCATCTCCAGCTTTGTGGGAACAAACTAAC 530
|||||| |||||||||||||| |||||||||| |||||||||| |||||||| ||||||
Sbjct 1583 AGCAATCGCAGAAAGCATGCCCGAACTACGCCACCTCCAGCTTTTTGGGAACATACTAAC 1642
Query 531 CAAAACAGGCTTAAACGCCATTCTTGACGGTTGTCCTCACCTGGAACACCTCGATTTACG 590
||| || || |||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1643 CAATGTGGGATTGAACGCCATTCTTGACGGTTGTCCTCACCTGGAACACCTTGATCTACG 1702
Query 591 CCAATGTATC-AACCTTG-TC-----GGGAATCTAGAGAAGCGTTGTTTTGAGAAAATTA 643
| ||||| || ||| ||| || ||| ||||||||||||| || |||||| || |
Sbjct 1703 CAAATGT-TCCAACGTTGATCTTACCGGGGATCTAGAGAAGCGATGCGTTGAGAGGATCA 1761
Query 644 AAGATTTGAGACGCCACAATGATTCTACCTCTG 676
||||||||| ||||| |||||| || ||| |||
Sbjct 1762 AAGATTTGAAACGCCCCAATGACTCAACCGCTG 1794
Score = 263 bits (142), Expect = 2e-69
Identities = 360/460 (78%), Gaps = 36/460 (8%)
Strand=Plus/Plus
Query 247 TCAAGTAATCTTAGAAGCCTTAGAC---TAATG-TGCTCA-GAAATAACAGACGATGGAT 301
||||||||||| ||||||||||||| ||| | ||| || |||||||||| | |||
Sbjct 357 TCAAGTAATCTGAGAAGCCTTAGACTTGTAA-GATGC-CATCAAATAACAGATAAGGGAG 414
Query 302 TTGTTC-AAGCAGTTGTGAAACTTCCAATGCTTGAAGAGCTTGAGGTTTCAGGAAT-ATC 359
||| | |||||||||||||||||||| |||||||||| || ||||| || | | | ||
Sbjct 415 TTG-CCGAAGCAGTTGTGAAACTTCCATTGCTTGAAGACCTCGAGGTCTC-GTACTGCTC 472
Query 360 ATTGTCAGGAGAGTCTATGAAACTTGCAGGGCTGTCTTGTCCAAATCTGAAGACATTGAT 419
||| |||||||||| | ||| ||| ||| | |||||||||| |||||| ||||||||
Sbjct 473 ATTTTCAGGAGAGTGTGTGACTGTTGTAGGTCAGTCTTGTCCACATCTGACGACATTGAA 532
Query 420 GCTAAACCGCC-TCTTTTAC-TTAAGTTCG-GAT---GATG-ATGATCATGATGCCATAG 472
||||||||||| | | | | |||| | || ||| ||||||| |||||||||
Sbjct 533 GCTAAACCGCCGAC-CTCGCGTCGAGTTTGTAATAAATATGCGTGATCATAATGCCATAG 591
Query 473 CAATTGCAGAAAGCATGCCTAAACTACGCCATCTCCAGCTTTGT-GGGAACAAACTAACC 531
|||||||||||||||||||| | |||||||| |||||||||| | |||||| |||||||
Sbjct 592 CAATTGCAGAAAGCATGCCTGAGCTACGCCACCTCCAGCTTT-TAGGGAACGCACTAACC 650
Query 532 AAAACAGGCTTAAACGCCATTCTTGACGGTTGTCCTCACCTGGAACACCTCGATTTACGC 591
|| || ||||| ||||||||||||||| ||||| |||||||||| || || |||||||||
Sbjct 651 AACACTGGCTTGAACGCCATTCTTGACAGTTGTACTCACCTGGACCATCTTGATTTACGC 710
Query 592 CAATGT-A---TC--AACCTTGTCG-GGAATCT-AGAGAAGCGTTGTTTTGAGAAA-ATT 642
|| ||| | | |||||| ||| ||| ||| | ||||| ||| |||| || ||
Sbjct 711 CAGTGTTACAATATTAACCTTCTCGAGGA-TCTCAT-GAAGCAATGTGTTGA-AAGGATC 767
Query 643 AAAGATTTGAGACGCCACAATGATTCTACCTCTGCTGATT 682
||| |||||||| ||| |||||| || | || |||||||
Sbjct 768 AAATATTTGAGATGCCCCAATGACTCAA--TC-GCTGATT 804
> Ahg943324 jgi|Araly1|943324|scaffold_603868.1
Length=860
Score = 156 bits (84), Expect = 3e-37
Identities = 172/213 (81%), Gaps = 12/213 (6%)
Strand=Plus/Plus
Query 452 ATGATGATCATGATGCCATAGCAATTGCAGAAAGCATGCCTA-AACTACGCCATCTCCAG 510
|||||||| || ||||| ||| ||| || ||||||||||| | |||||||||| ||| |
Sbjct 617 ATGATGATTATTATGCCCTAGAAATCGCTGAAAGCATGCC-AGAACTACGCCACCTCTAC 675
Query 511 CTTTGTGGGAACAAACTAACCAAAACAGGCTTAAACGCCATTCTTGACGGTTGTCCTCAC 570
|||| |||||||||||||| | | |||||| |||||||||||| ||||||||||||||
Sbjct 676 CTTTATGGGAACAAACTAAGTGACATAGGCTTGAACGCCATTCTTAACGGTTGTCCTCAC 735
Query 571 CTGGAACACCTCGATTTACGCCAA-TGTATCAA-C-----CTTGTCGG-GAATCTAGAGA 622
|||||||||||||| |||| || ||| |||| | |||||||| || ||| ||||
Sbjct 736 CTGGAACACCTCGAGTTACAT-AAGTGTTTCAAGCTTAAACTTGTCGGAGA-TCTGGAGA 793
Query 623 AGCGTTGTTTTGAGAAAATTAAAGATTTGAGAC 655
|||| |||| ||||| || ||| |||| ||||
Sbjct 794 AGCGATGTTATGAGAGGATCAAATATTTTAGAC 826
> Ahg333289 jgi|Araly1|333289|fgenesh1_pm.C_scaffold_320000002
Length=675
Score = 126 bits (68), Expect = 2e-28
Identities = 436/606 (72%), Gaps = 55/606 (9%)
Strand=Plus/Plus
Query 1 CGTCTTAGCGTGACTGAGATACTGGAGAACGCTCAGAAAGTGTGTAGATCGTGACGATAT 60
|||||||||||| |||| || ||||| ||||||||||| ||||| ||| |||| |||
Sbjct 67 CGTCTTAGCGTGGCTGATATTCTGGACAACGCTCAGAAGGTGTGCAGACCGTGGCGACGC 126
Query 61 GTTTGTAAAGACCCATCCATATGGCGTAAAATCGACATGCGAATCTTGAGTTACA-ACAA 119
|| |||||||| || || || ||||| |||||||||||| ||| | ||| | || | |
Sbjct 127 GTCTGTAAAGAACCTTCGATGTGGCGGAAAATCGACATGAGAAGCCTGA--T-CAGAGAT 183
Query 120 ACCAGTACTGGT-GAACAATCCTGAGGCGAT-ATGT--CGTAACGCCGTTGATCGTAGCG 175
| | | || | | || ||| | || || |||| ||| ||||||| ||||| ||||
Sbjct 184 A-GGGGAATGCTCG-AC--CCCTTA-GCTATCATGTGCCGTCACGCCGTGGATCGCAGCG 238
Query 176 AGGGTGGCTTGCTGGAGATCAACATTGGGGACTTCGGGAGTGATTCTCTCCT-TACATAC 234
||||||| ||| | | ||| || ||||| |||||| | ||| ||| || || |||
Sbjct 239 AGGGTGGTTTGGTCAAAATCCACCTTGGGAACTTCGTCAACGATGATCTTCTCGAC-TAC 297
Query 235 ATCGCGGAGAGGTCAAGTAATCTTAGAAGCCTTAGAC-T--AATGTGC--T-C-AGAAAT 287
||||| || || ||||| ||||| ||||| ||| ||| | ||||||| | | || |
Sbjct 298 ATCGCTGATAGATCAAGGAATCTGAGAAGTCTTGGACTTGGAATGTGCTTTCCAAG-GGT 356
Query 288 AAC-AGACGATGGATTTGTTCAA-GCAGTTGTGAAACTTCCAATGCTTGAAGA-GCTTGA 344
|| || | | ||| ||| | || ||| | ||||||||| | |||||| | || ||
Sbjct 357 GACGAGGCCA-GGACTTG-TGAATGCAATCACAAAACTTCCATTACTTGAA-ACCCTCGA 413
Query 345 GGTTTCAGGAATATCAT-TGT-CAGGAGAGTCTATGAAACTTGCAGGGC-TGTCTTGTCC 401
||| ||| | |||| | | | |||| | || || | ||| | | |||| ||
Sbjct 414 GGTCTCA--CA-CTCATGTTTAAACCTGAGT-T-TGGAAGATATAGGCCACG-CTTGCCC 467
Query 402 AAATCTGAAGACATTGATGCTAAACCGCCTC-----TTTTACT-TAAGT-TCG-GATGAT 453
| | || |||||||||| | |||| | |||| ||| || || | ||| |||||
Sbjct 468 ACAGCTAAAGACATTGAAGTTAAA-CTCCTCAGGGGGTTT-CTGGAACTCTCGCAATGAT 525
Query 454 GATGATCATGATGCCATAGCAATTGC-AGAAAGCATGCCTA-AACTACGCCATCTCCAGC 511
|||||| | ||||| || ||| || | |||||||||| | |||||||||| ||||| |
Sbjct 526 GATGAT--T-ATGCCCTATAAATCGCTA-AAAGCATGCC-AGAACTACGCCACCTCCACC 580
Query 512 TTTGTGGGAACAAACTAACCAAAACAGGCTTAAACGCCATTCTTGACGGTTGTCCTCACC 571
||| || ||| || |||| | ||| |||| || |||||||||||||||||||||||||
Sbjct 581 TTTATGCGAATAACCTAAGTGACACACGCTTGAATGCCATTCTTGACGGTTGTCCTCACC 640
Query 572 TGGAAC 577
||||||
Sbjct 641 TGGAAC 646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33624412794
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5