BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G52490.1 Length=879 Score E Sequences producing significant alignments: (Bits) Value Ahg916881 jgi|Araly1|916881|Al_scaffold_0008_1632 1288 0.0 Ahg495317 jgi|Araly1|495317|fgenesh2_kg.8__1133__AT5G52470.1 542 2e-153 > Ahg916881 jgi|Araly1|916881|Al_scaffold_0008_1632 Length=891 Score = 1288 bits (697), Expect = 0.0 Identities = 820/878 (93%), Gaps = 13/878 (1%) Strand=Plus/Plus Query 1 ATGAAACCTCCCCAAAGAGGACGTGGTGGTGGTGTTAGAGGTGGAAGAGGTTTAGCCAGA 60 |||| ||||||||| | ||||||||||||||||| | | |||||||||||||||||||| Sbjct 1 ATGAGACCTCCCCACATAGGACGTGGTGGTGGTGGT--A-GTGGAAGAGGTTTAGCCAGA 57 Query 61 GGCGGTGAAGGAAGTGCCGTAAGAGGCAGTGGAAGAGGCGGCGAAAGTGGCCGTGGAAGA 120 |||||||||||| ||||| |||||||| |||| |||||| | |||||||||| ||||||| Sbjct 58 GGCGGTGAAGGAGGTGCCATAAGAGGCCGTGGCAGAGGCCGAGAAAGTGGCCCTGGAAGA 117 Query 121 GGGCCTGGAAGAG--TTAAAAGTGAATCGGACGGTGGAATTAAGGGAGGAAGCAAAGTGT 178 | | || || | |||||||||| ||| ||||||||||||||||||||||||| Sbjct 118 --G--T-AAAAAGCCGTGAAAGTGAATC---CGGAGGAATTAAGGGAGGAAGCAAAGTGT 169 Query 179 TAGTGACACCACACAGGCACGCAGGAGTGTTTGTTGCCAAAAGTAAAGCAGATGCTCTTG 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 170 TAGTGACACCACACAGGCACGCAGGAGTGTTTGTTGCCAAAAGTAAAGCAGATGCTCTTG 229 Query 239 TAACCAAGAACTTAGTTCCTGGTGAAATCATTTACAATGAGAAGAGAATCTTTGTTCAGA 298 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 230 TCACCAAGAACTTAGTTCCTGGTGAAATCATTTACAATGAGAAGAGAATCTTTGTTCAGA 289 Query 299 ACGAAGACCGATCTACTGTTGAATACAGAGTTTGGAACCCTCATAGATCTAAGTTAGCTG 358 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 290 ACGAAGACCGATCTACAGTTGAATACAGAGTTTGGAACCCTCATAGGTCTAAGTTAGCTG 349 Query 359 ATGCTATTACCACTGGTGTTGATAACATTTGGATCAAACCTGGTGTTAAAGTTCTGTACC 418 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 350 ATGCTATTACCACTGGTGTTGATAACATTTGGATCAAACCTGGTGTTAACGTTCTTTACC 409 Query 419 TTGGTGCTTCTTCTGGATACACCGTGTCTCATGTCTCTGACATTGTTGGTCCAGAGGGAT 478 ||||||||||||| |||||||| || |||||| ||||||||||||||||||| ||||||| Sbjct 410 TTGGTGCTTCTTCCGGATACACTGTATCTCATATCTCTGACATTGTTGGTCCTGAGGGAT 469 Query 479 GTGTTTACGCTGTTGAGCATTCTGATATTTGTGGTAAAGTTTTGATGAACATGGCGGAGA 538 ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 470 GTGTTTACGCTGTTGAGCATTCTCATATATGTGGTAAAGTTTTGATGAACATGGCGGAGA 529 Query 539 AGAGAACTAATGTTATACCAATCATTGAAGATGCTAGACATCCTGCTAAATATAGAATGC 598 |||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| Sbjct 530 AGAGAACTAATGTTATACCAATCATTGAAGATGCTAGACATCCTGCCAAGTACAGAATGC 589 Query 599 TTGTGGGAATGGTTGATATCATATTCTCTGATGTTAATCACCCTGAGCAAGCTAACATAT 658 ||||||||||||||||| |||||||||||||||||||||| || || ||| |||| |||| Sbjct 590 TTGTGGGAATGGTTGATGTCATATTCTCTGATGTTAATCAACCAGATCAATCTAAGATAT 649 Query 659 TAAGTCTCAATGCTTCTTATTTCCTCAAATCTGGAGGGCACTTTATGATCTCTATAAAGG 718 | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 650 TGGGTCTCAATGCTTCTTATTTCCTCAAATCTGGAGGTCACTTTATGATCTCTATAAAGG 709 Query 719 CGAATTCTATAGACTCAACAATTGCAGCAGAAACTGTGTATCAGATGGAAGTGGAGAAGT 778 | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 710 CAAATTCTATAGACTCAACAATTGCAGCAGAAACAGTGTATCAGATGGAAGTGGAGAAGC 769 Query 779 TACAAATGGAAGAGTTGAGACCAACAGAGATATTGCATCTTGACTCTTGTGAGGAAAAGC 838 | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 770 TGCAAATGGAAGAGTTGAGACCAACAGAGATATTGCATATTGACTCTTGTGAGGAAAAGC 829 Query 839 ATGCTTGTGTTTTTGGTGGATATCGCTTGCCTAGGAAG 876 |||||||||||||||||||||||||||||||||||||| Sbjct 830 ATGCTTGTGTTTTTGGTGGATATCGCTTGCCTAGGAAG 867 > Ahg495317 jgi|Araly1|495317|fgenesh2_kg.8__1133__AT5G52470.1 Length=1104 Score = 542 bits (293), Expect = 2e-153 Identities = 598/741 (81%), Gaps = 38/741 (5%) Strand=Plus/Plus Query 154 GGAATTAAGGGAGGAAGCAAAGTG-TTAG-TGACACCACACAGGCACGCAGGAGTGTTTG 211 ||||| || ||||||||||||||| || | ||| || ||||| ||||||||||||||| Sbjct 267 GGAATGAAAGGAGGAAGCAAAGTGCTT-GTTGA-GCCTCACAGACACGCAGGAGTGTTTA 324 Query 212 TTGCCAAAAGTAAAGCAGATGCTCTTGTAACCAAGAACTTAGTTCCTGGTGAAATC-ATT 270 |||| || |||||| |||||||||||| || ||||| || |||||||||| || | || Sbjct 325 TTGCTAAGGGTAAAGAAGATGCTCTTGTTACTAAGAATTTGGTTCCTGGTG-AAGCTGTT 383 Query 271 TACAATGAGAAGAGAATCTTTGTTCAGAACGAAGACCGATCTACTG-TTGAATACAGAGT 329 |||||||||||||| |||| ||||||||| ||||| || ||| | ||||||||||||| Sbjct 384 TACAATGAGAAGAGGATCTCTGTTCAGAATGAAGATGGAACTA-AGATTGAATACAGAGT 442 Query 330 TTGGAACCCTCATAGATCTAAGTTAGCTGATGCTATTAC-CACTGGTGTTGATAACATTT 388 |||||| ||| ||||||||||||||||| ||| ||| | ||||||||||||||||| Sbjct 443 TTGGAATCCTTTTAGATCTAAGTTAGCTGCTGCAATT-CTTGGTGGTGTTGATAACATTT 501 Query 389 GGATCAAACCTGGTGTTAAAGTTCTGTACCTTGG-TGCTTCTTCTGGATAC-ACCGTGTC 446 ||||||||||||||| ||||||||| ||| |||| |||| |||||||| || || || || Sbjct 502 GGATCAAACCTGGTGCTAAAGTTCTTTAC-TTGGGTGCTGCTTCTGGA-ACCACTGTCTC 559 Query 447 TCATGTCTCTGACATTGTTGGTCCAGAGGGATGTGTTTACGCTGTTGAGCATTCTGATAT 506 |||||| |||||| ||||||| || |||||||||||||| ||||||||| |||| ||| Sbjct 560 TCATGTTTCTGACCTTGTTGGCCCTGAGGGATGTGTTTATGCTGTTGAGTTTTCTCATAG 619 Query 507 TTGTGGTAAAGTTTTGATGAACATGGCGGAGAAGAGAACTAATGTTATACCAATCATTGA 566 |||||| || |||| |||||||||| ||||||||||||||||||| |||||||| || Sbjct 620 AAGTGGTAGAGATTTGGTGAACATGGCAAAGAAGAGAACTAATGTTATTCCAATCATCGA 679 Query 567 AGATGCTAGACATCCTGCTAAATATAGAATGCTTGTGGGAATGGTTGATATCATATTCTC 626 |||||||||||| |||||||| || |||||||||||||| ||||||||| |||||||||| Sbjct 680 AGATGCTAGACACCCTGCTAAGTACAGAATGCTTGTGGGCATGGTTGATGTCATATTCTC 739 Query 627 TGATGTTAATCACCCTGAGCAAGCTAACA-TATTAAGTCTCAATGCTTC-TTATTTCCTC 684 ||||||| ||| || || || || || | | || | |||||||| || || ||||||| Sbjct 740 TGATGTTGCTCAGCCAGATCAGGC-AAGAATCTTGGGCCTCAATGCCTCATT-TTTCCTC 797 Query 685 AAATCTGGAGGGCACTTTATGATCTCTATAAAGGCGAATTCTATAGACTCAACAATTGCA 744 ||| |||| || |||||| | ||||| || ||||| || | ||| ||||| || ||||| Sbjct 798 AAAACTGGTGGACACTTTGTTATCTCAATCAAGGCCAACTGTATCGACTCTACGGTTGCA 857 Query 745 GCAGAAACTGTGTATC-AGA-TGGAAGTGGAGAAGTTACAA-ATGGAAG-AGTTGA-GAC 799 |||||| | |||| || ||| || | ||| ||||| | ||| | ||| | |||| | | | Sbjct 858 GCAGAAGCAGTGT-TCCAGAGTG-AGGTGAAGAAGCTGCAACA-GGA-GCAGTTTAAG-C 912 Query 800 CAACAGAGATAT-TG-CATCTTGA-CTC-TTGTGAG-GAAAAGCATGCTTGTGTTTTTGG 854 || |||| | | || | ||| || | | || |||| | | ||||| |||||| |||| Sbjct 913 CAGCAGA-ACAGGTGAC-TCTAGAGC-CGTT-TGAGCGTGAC-CATGCCTGTGTTGTTGG 967 Query 855 TGGATATCGCTTGCCTAGGAA 875 ||| || ||| |||||| ||| Sbjct 968 TGGTTACCGCATGCCTAAGAA 988 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32556971118 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5