BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52490.1
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916881 jgi|Araly1|916881|Al_scaffold_0008_1632 1288 0.0
Ahg495317 jgi|Araly1|495317|fgenesh2_kg.8__1133__AT5G52470.1 542 2e-153
> Ahg916881 jgi|Araly1|916881|Al_scaffold_0008_1632
Length=891
Score = 1288 bits (697), Expect = 0.0
Identities = 820/878 (93%), Gaps = 13/878 (1%)
Strand=Plus/Plus
Query 1 ATGAAACCTCCCCAAAGAGGACGTGGTGGTGGTGTTAGAGGTGGAAGAGGTTTAGCCAGA 60
|||| ||||||||| | ||||||||||||||||| | | ||||||||||||||||||||
Sbjct 1 ATGAGACCTCCCCACATAGGACGTGGTGGTGGTGGT--A-GTGGAAGAGGTTTAGCCAGA 57
Query 61 GGCGGTGAAGGAAGTGCCGTAAGAGGCAGTGGAAGAGGCGGCGAAAGTGGCCGTGGAAGA 120
|||||||||||| ||||| |||||||| |||| |||||| | |||||||||| |||||||
Sbjct 58 GGCGGTGAAGGAGGTGCCATAAGAGGCCGTGGCAGAGGCCGAGAAAGTGGCCCTGGAAGA 117
Query 121 GGGCCTGGAAGAG--TTAAAAGTGAATCGGACGGTGGAATTAAGGGAGGAAGCAAAGTGT 178
| | || || | |||||||||| ||| |||||||||||||||||||||||||
Sbjct 118 --G--T-AAAAAGCCGTGAAAGTGAATC---CGGAGGAATTAAGGGAGGAAGCAAAGTGT 169
Query 179 TAGTGACACCACACAGGCACGCAGGAGTGTTTGTTGCCAAAAGTAAAGCAGATGCTCTTG 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 TAGTGACACCACACAGGCACGCAGGAGTGTTTGTTGCCAAAAGTAAAGCAGATGCTCTTG 229
Query 239 TAACCAAGAACTTAGTTCCTGGTGAAATCATTTACAATGAGAAGAGAATCTTTGTTCAGA 298
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 TCACCAAGAACTTAGTTCCTGGTGAAATCATTTACAATGAGAAGAGAATCTTTGTTCAGA 289
Query 299 ACGAAGACCGATCTACTGTTGAATACAGAGTTTGGAACCCTCATAGATCTAAGTTAGCTG 358
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 290 ACGAAGACCGATCTACAGTTGAATACAGAGTTTGGAACCCTCATAGGTCTAAGTTAGCTG 349
Query 359 ATGCTATTACCACTGGTGTTGATAACATTTGGATCAAACCTGGTGTTAAAGTTCTGTACC 418
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 350 ATGCTATTACCACTGGTGTTGATAACATTTGGATCAAACCTGGTGTTAACGTTCTTTACC 409
Query 419 TTGGTGCTTCTTCTGGATACACCGTGTCTCATGTCTCTGACATTGTTGGTCCAGAGGGAT 478
||||||||||||| |||||||| || |||||| ||||||||||||||||||| |||||||
Sbjct 410 TTGGTGCTTCTTCCGGATACACTGTATCTCATATCTCTGACATTGTTGGTCCTGAGGGAT 469
Query 479 GTGTTTACGCTGTTGAGCATTCTGATATTTGTGGTAAAGTTTTGATGAACATGGCGGAGA 538
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 470 GTGTTTACGCTGTTGAGCATTCTCATATATGTGGTAAAGTTTTGATGAACATGGCGGAGA 529
Query 539 AGAGAACTAATGTTATACCAATCATTGAAGATGCTAGACATCCTGCTAAATATAGAATGC 598
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 530 AGAGAACTAATGTTATACCAATCATTGAAGATGCTAGACATCCTGCCAAGTACAGAATGC 589
Query 599 TTGTGGGAATGGTTGATATCATATTCTCTGATGTTAATCACCCTGAGCAAGCTAACATAT 658
||||||||||||||||| |||||||||||||||||||||| || || ||| |||| ||||
Sbjct 590 TTGTGGGAATGGTTGATGTCATATTCTCTGATGTTAATCAACCAGATCAATCTAAGATAT 649
Query 659 TAAGTCTCAATGCTTCTTATTTCCTCAAATCTGGAGGGCACTTTATGATCTCTATAAAGG 718
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 650 TGGGTCTCAATGCTTCTTATTTCCTCAAATCTGGAGGTCACTTTATGATCTCTATAAAGG 709
Query 719 CGAATTCTATAGACTCAACAATTGCAGCAGAAACTGTGTATCAGATGGAAGTGGAGAAGT 778
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 710 CAAATTCTATAGACTCAACAATTGCAGCAGAAACAGTGTATCAGATGGAAGTGGAGAAGC 769
Query 779 TACAAATGGAAGAGTTGAGACCAACAGAGATATTGCATCTTGACTCTTGTGAGGAAAAGC 838
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 770 TGCAAATGGAAGAGTTGAGACCAACAGAGATATTGCATATTGACTCTTGTGAGGAAAAGC 829
Query 839 ATGCTTGTGTTTTTGGTGGATATCGCTTGCCTAGGAAG 876
||||||||||||||||||||||||||||||||||||||
Sbjct 830 ATGCTTGTGTTTTTGGTGGATATCGCTTGCCTAGGAAG 867
> Ahg495317 jgi|Araly1|495317|fgenesh2_kg.8__1133__AT5G52470.1
Length=1104
Score = 542 bits (293), Expect = 2e-153
Identities = 598/741 (81%), Gaps = 38/741 (5%)
Strand=Plus/Plus
Query 154 GGAATTAAGGGAGGAAGCAAAGTG-TTAG-TGACACCACACAGGCACGCAGGAGTGTTTG 211
||||| || ||||||||||||||| || | ||| || ||||| |||||||||||||||
Sbjct 267 GGAATGAAAGGAGGAAGCAAAGTGCTT-GTTGA-GCCTCACAGACACGCAGGAGTGTTTA 324
Query 212 TTGCCAAAAGTAAAGCAGATGCTCTTGTAACCAAGAACTTAGTTCCTGGTGAAATC-ATT 270
|||| || |||||| |||||||||||| || ||||| || |||||||||| || | ||
Sbjct 325 TTGCTAAGGGTAAAGAAGATGCTCTTGTTACTAAGAATTTGGTTCCTGGTG-AAGCTGTT 383
Query 271 TACAATGAGAAGAGAATCTTTGTTCAGAACGAAGACCGATCTACTG-TTGAATACAGAGT 329
|||||||||||||| |||| ||||||||| ||||| || ||| | |||||||||||||
Sbjct 384 TACAATGAGAAGAGGATCTCTGTTCAGAATGAAGATGGAACTA-AGATTGAATACAGAGT 442
Query 330 TTGGAACCCTCATAGATCTAAGTTAGCTGATGCTATTAC-CACTGGTGTTGATAACATTT 388
|||||| ||| ||||||||||||||||| ||| ||| | |||||||||||||||||
Sbjct 443 TTGGAATCCTTTTAGATCTAAGTTAGCTGCTGCAATT-CTTGGTGGTGTTGATAACATTT 501
Query 389 GGATCAAACCTGGTGTTAAAGTTCTGTACCTTGG-TGCTTCTTCTGGATAC-ACCGTGTC 446
||||||||||||||| ||||||||| ||| |||| |||| |||||||| || || || ||
Sbjct 502 GGATCAAACCTGGTGCTAAAGTTCTTTAC-TTGGGTGCTGCTTCTGGA-ACCACTGTCTC 559
Query 447 TCATGTCTCTGACATTGTTGGTCCAGAGGGATGTGTTTACGCTGTTGAGCATTCTGATAT 506
|||||| |||||| ||||||| || |||||||||||||| ||||||||| |||| |||
Sbjct 560 TCATGTTTCTGACCTTGTTGGCCCTGAGGGATGTGTTTATGCTGTTGAGTTTTCTCATAG 619
Query 507 TTGTGGTAAAGTTTTGATGAACATGGCGGAGAAGAGAACTAATGTTATACCAATCATTGA 566
|||||| || |||| |||||||||| ||||||||||||||||||| |||||||| ||
Sbjct 620 AAGTGGTAGAGATTTGGTGAACATGGCAAAGAAGAGAACTAATGTTATTCCAATCATCGA 679
Query 567 AGATGCTAGACATCCTGCTAAATATAGAATGCTTGTGGGAATGGTTGATATCATATTCTC 626
|||||||||||| |||||||| || |||||||||||||| ||||||||| ||||||||||
Sbjct 680 AGATGCTAGACACCCTGCTAAGTACAGAATGCTTGTGGGCATGGTTGATGTCATATTCTC 739
Query 627 TGATGTTAATCACCCTGAGCAAGCTAACA-TATTAAGTCTCAATGCTTC-TTATTTCCTC 684
||||||| ||| || || || || || | | || | |||||||| || || |||||||
Sbjct 740 TGATGTTGCTCAGCCAGATCAGGC-AAGAATCTTGGGCCTCAATGCCTCATT-TTTCCTC 797
Query 685 AAATCTGGAGGGCACTTTATGATCTCTATAAAGGCGAATTCTATAGACTCAACAATTGCA 744
||| |||| || |||||| | ||||| || ||||| || | ||| ||||| || |||||
Sbjct 798 AAAACTGGTGGACACTTTGTTATCTCAATCAAGGCCAACTGTATCGACTCTACGGTTGCA 857
Query 745 GCAGAAACTGTGTATC-AGA-TGGAAGTGGAGAAGTTACAA-ATGGAAG-AGTTGA-GAC 799
|||||| | |||| || ||| || | ||| ||||| | ||| | ||| | |||| | | |
Sbjct 858 GCAGAAGCAGTGT-TCCAGAGTG-AGGTGAAGAAGCTGCAACA-GGA-GCAGTTTAAG-C 912
Query 800 CAACAGAGATAT-TG-CATCTTGA-CTC-TTGTGAG-GAAAAGCATGCTTGTGTTTTTGG 854
|| |||| | | || | ||| || | | || |||| | | ||||| |||||| ||||
Sbjct 913 CAGCAGA-ACAGGTGAC-TCTAGAGC-CGTT-TGAGCGTGAC-CATGCCTGTGTTGTTGG 967
Query 855 TGGATATCGCTTGCCTAGGAA 875
||| || ||| |||||| |||
Sbjct 968 TGGTTACCGCATGCCTAAGAA 988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32556971118
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5