BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52500.1
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
Ahg357492 jgi|Araly1|357492|fgenesh1_pg.C_scaffold_8001279 586 1e-166
Ahg359415 jgi|Araly1|359415|fgenesh1_pg.C_scaffold_205000001 580 6e-165
Ahg486184 jgi|Araly1|486184|fgenesh2_kg.5__2176__AT3G57400.1 473 1e-132
> Ahg357492 jgi|Araly1|357492|fgenesh1_pg.C_scaffold_8001279
Length=594
Score = 586 bits (317), Expect = 1e-166
Identities = 434/489 (89%), Gaps = 14/489 (3%)
Strand=Plus/Plus
Query 614 TATTTGGGGGAAGAAG-AGTCGTCATCGAGCTAATTATAACTCGAACGAGCTGACTCATG 672
|||||||||||||||| || ||||| ||||||||||||||||| |||| |||||||||
Sbjct 105 TATTTGGGGGAAGAAGAAG-AGTCATGGAGCTAATTATAACTCGTCCGAGTTGACTCATG 163
Query 673 GCTCGATAGTTGGTTTCGACGTAACTGAGTTGGATCCTGAAAACTCTTTATCCGGGTTTA 732
||||||||| ||||||||||| |||||||||||| |||||||||| ||||||||||||
Sbjct 164 TCTCGATAGTGGGTTTCGACGTGACTGAGTTGGATACTGAAAACTCGCTATCCGGGTTTA 223
Query 733 TGGATCAAGTTCCGTTAAGCTTGAGGAGATGGGCTTGTTACCCAATGCTTCTTGGTCGAG 792
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 224 TGGATCAAGTTCCGATAAGCTTGAGGAGATGGGCTTGTTACCCAATGCTGCTTGGTAGAG 283
Query 793 TACGACGCAGTTTCAAACACGTTATGCTTGTTGACGCTAAAACTTCATTTTTCATCGGTG 852
|| | |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 284 TAAGTCGCAGTTTCAAACACGTTATGCTTGTCGACGCTAAAACCTCATTGTTCATCGGTG 343
Query 853 ACCCGTTTACCCGGATTCGTAACCGGAGCCCCGAC-TCAGTCCTCTTCTTCTTCTCAAAA 911
||||||| ||||||||||||||||||||||||||| | |||||||||||||| |||||||
Sbjct 344 ACCCGTTAACCCGGATTCGTAACCGGAGCCCCGACGT-AGTCCTCTTCTTCTACTCAAAA 402
Query 912 CACAAGAACGCCTCCGAGGTTAATCCGGAGATTTTGATCGGTGGAGCTAAAGGAATCAGG 971
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 403 TACAAGAAAGCCTCCGAGGTTAATCCGGCGATTTTGATCGGTGGAGCTAAAGGAATCAGG 462
Query 972 AGATTGTCGAGCTCCATGCATACTGAGATTGTGAGAGC--GA-CGA-TG-AT-GAAGAAG 1025
||||| |||||||||||||||||| ||||||||||||| || | | || | || || |
Sbjct 463 AGATTATCGAGCTCCATGCATACTCAGATTGTGAGAGCAAGAGCAAGTGCAACGATGATG 522
Query 1026 AACTCGGTTACGGA---AGTAACGGAATCGGTTGTGTTGAGTCAACTCGTCGGGAATGTT 1082
| | | | | | ||| ||||||||||||||||||||||||||||| |||||| ||
Sbjct 523 ATCAAGAAGAAGAACTCAGTTACGGAATCGGTTGTGTTGAGTCAACTCGTTGGGAATTTT 582
Query 1083 C-ATATGAC 1090
| |||||||
Sbjct 583 CCATATGAC 591
> Ahg359415 jgi|Araly1|359415|fgenesh1_pg.C_scaffold_205000001
Length=594
Score = 580 bits (314), Expect = 6e-165
Identities = 433/489 (89%), Gaps = 14/489 (3%)
Strand=Plus/Plus
Query 614 TATTTGGGGGAAGAAG-AGTCGTCATCGAGCTAATTATAACTCGAACGAGCTGACTCATG 672
|||||||||||||||| || ||||| ||||||||||||||||| |||| |||||||||
Sbjct 105 TATTTGGGGGAAGAAGAAG-AGTCATGGAGCTAATTATAACTCGTCCGAGTTGACTCATG 163
Query 673 GCTCGATAGTTGGTTTCGACGTAACTGAGTTGGATCCTGAAAACTCTTTATCCGGGTTTA 732
||||||||| ||||||||||| |||||||||||| |||||||||| ||||||||||||
Sbjct 164 TCTCGATAGTGGGTTTCGACGTGACTGAGTTGGATACTGAAAACTCGCTATCCGGGTTTA 223
Query 733 TGGATCAAGTTCCGTTAAGCTTGAGGAGATGGGCTTGTTACCCAATGCTTCTTGGTCGAG 792
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 224 TGGATCAAGTTCCGATAAGCTTGAGGAGATGGGCTTGTTACCCAATGCTGCTTGGTAGAG 283
Query 793 TACGACGCAGTTTCAAACACGTTATGCTTGTTGACGCTAAAACTTCATTTTTCATCGGTG 852
|| | |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 284 TAAGTCGCAGTTTCAAACACGTTATGCTTGTCGACGCTAAAACCTCATTGTTCATCGGTG 343
Query 853 ACCCGTTTACCCGGATTCGTAACCGGAGCCCCGAC-TCAGTCCTCTTCTTCTTCTCAAAA 911
||||||| ||||||||||||||||||||||||||| | || ||||||||| | |||||||
Sbjct 344 ACCCGTTAACCCGGATTCGTAACCGGAGCCCCGACGT-AGCCCTCTTCTTGTACTCAAAA 402
Query 912 CACAAGAACGCCTCCGAGGTTAATCCGGAGATTTTGATCGGTGGAGCTAAAGGAATCAGG 971
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 403 CACAAGAAAGCCTCCGAGGTTAATCCGGCGATTTTGATCGGTGGAGCTAAAGGAATCAGG 462
Query 972 AGATTGTCGAGCTCCATGCATACTGAGATTGTGAGAGC--GA-CGA-TG-AT-GAAGAAG 1025
||||| |||||||||||||||||| ||||||||||||| || | | || | || || |
Sbjct 463 AGATTATCGAGCTCCATGCATACTCAGATTGTGAGAGCAAGAGCAAGTGCAACGATGATG 522
Query 1026 AACTCGGTTACGGA---AGTAACGGAATCGGTTGTGTTGAGTCAACTCGTCGGGAATGTT 1082
| | | | | | ||| ||||||||||||||||||||||||||||| |||||| ||
Sbjct 523 ATCAAGAAGAAGAACTCAGTTACGGAATCGGTTGTGTTGAGTCAACTCGTTGGGAATTTT 582
Query 1083 C-ATATGAC 1090
| |||||||
Sbjct 583 CCATATGAC 591
> Ahg486184 jgi|Araly1|486184|fgenesh2_kg.5__2176__AT3G57400.1
Length=1707
Score = 473 bits (256), Expect = 1e-132
Identities = 422/496 (85%), Gaps = 35/496 (7%)
Strand=Plus/Plus
Query 664 TGACTCATGGCTCGA-TAGTTGGTTTCGACGTAACTGAGTTGGATCCTGAAAACTCTTTA 722
||||||||||||| | |||| ||||||||||| |||||| |||||||||||||||| ||
Sbjct 860 TGACTCATGGCTC-AGTAGTGGGTTTCGACGTGACTGAGCTGGATCCTGAAAACTCGCTA 918
Query 723 TCCGGGTTTATGGATCAAGTTCCGTTAAGCTTGAGGAGATGGGCTTGTTACCCAATGCTT 782
||||||||||||||||| |||||| |||||||||| |||||||| ||||||||||||||
Sbjct 919 TCCGGGTTTATGGATCACGTTCCGATAAGCTTGAGAAGATGGGCGTGTTACCCAATGCTG 978
Query 783 CTTGGTCGAGTACGACGCAGTTTCAAACACGTTATGCTTGTTGACGCTAAAACTTCATTT 842
|| ||||||||| | |||| |||||||||||||||||| || ||||||||||| || ||
Sbjct 979 CTAGGTCGAGTAAGGCGCAATTTCAAACACGTTATGCTCGTGGACGCTAAAACCTCCTTG 1038
Query 843 TTCATCGGTGACCCGTTTA-CCCGGATTCGTAACCGGAGCCCCGACTCAGTCCTCTTCTT 901
||| ||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1039 TTCCTCGGTGACCCG-TTAGCCCGGATTCGTAACCGGAGCCCCGAGTCAGTCCTCTTCTT 1097
Query 902 CTTCTCAA-A-AC----A-CAAG-AACGCCTCCGAGGTTAATCCGGAGATTTTGATCGGT 953
| ||| || | || | |||| || | |||||| |||||||||| |||||||||||||
Sbjct 1098 C-TCTAAACACACTAGTAGCAAGAAAAG-CTCCGACGTTAATCCGGCGATTTTGATCGGT 1155
Query 954 GGAGCTAAAGGAATCAGGAGATTGTCGAGCTCCATGCATACTGAGATTGTGAGAGCGACG 1013
||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 1156 GGAGCTAAAGGAATCAGGAGATTATCGAGCTCGATGCACACTGAGATTGTGAGAGCGACG 1215
Query 1014 AT---G-A------T--GAAGAAGAACTCGGTTACGGAAGTAACGGAATCGGTTGTGTTG 1061
|| | | | |||||||||||||||||||||| | ||| | |||| ||
Sbjct 1216 ATTCAGCAGCAGCATAAGAAGAAGAACTCGGTTACGGAA-T--CGG--T-GGTTCTG--- 1266
Query 1062 AGTCAACTCGTCGGGAATGTTCATATGACGAAGAACTTTCAAGTGGTTTTAAGTGAGTCA 1121
||||||||||| ||||||||||| ||||||||||| ||| | |||||| ||||||||
Sbjct 1267 AGTCAACTCGTTGGGAATGTTCACATGACGAAGAATTTTGAGGTGGTTACGAGTGAGTCG 1326
Query 1122 GTGGTGCCGGAAGCGA 1137
||||| ||||||||||
Sbjct 1327 GTGGTACCGGAAGCGA 1342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48797333760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5