BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52520.1
Length=1986
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495320 jgi|Araly1|495320|fgenesh2_kg.8__1136__AT5G52520.1 3009 0.0
> Ahg495320 jgi|Araly1|495320|fgenesh2_kg.8__1136__AT5G52520.1
Length=1972
Score = 3009 bits (1629), Expect = 0.0
Identities = 1877/1992 (94%), Gaps = 35/1992 (2%)
Strand=Plus/Plus
Query 10 aaaaagaaaaaaCCACAAAACTTCTCTGAAAGGTGGATAAATGGTGTCGTCGTCTCTGAG 69
|||| |||||||||||||||||||||||||| || ||||||||||| | ||||||||||
Sbjct 1 AAAAGGAAAAAACCACAAAACTTCTCTGAAAAGTAGATAAATGGTG--G-CGTCTCTGAG 57
Query 70 ACTCCCTTCACTCACTTCGCTTCTATTTCCCGCCACCACTCGTTATCCAGCCACTCTCCG 129
||||||||| |||||||| ||| |||||||||||||||||||||| ||||| |||||||
Sbjct 58 ACTCCCTTCTCTCACTTCCCTTTTATTTCCCGCCACCACTCGTTACCCAGCTTCTCTCCG 117
Query 130 GCGAACCGTATGTCTACGGAACAGACCTCTTTCCGGATTCGCGACGGCGCCGAGTGGTAC 189
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GCGAGCCGTATGTCTACGGAACAGACCTCTTTCCGGATTCGCGACGGCGCCGAGTGGTAC 177
Query 190 TGCTTCGCCGGAGACTAAGTCGTCGGAGGTTGACCGGCTTAGGTCAGACCGAGCCGTTAC 249
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 178 TGCTTCGCCGGAGACTAAGTCCACGGAGGTTGACCGGCTTAGGTCAGACCGAGCCGTTAC 237
Query 250 GCCTCGCTCACAGGACTTTAATGCTTGGTATCTTGATGTTATAGCTAGTGCTGAACTCGC 309
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 238 GCCTCGCTCACAGGACTTTAATGCGTGGTATCTTGATGTTATAGCTAGTGCTGAACTCGC 297
Query 310 GGATTATGGTCCGGTTCGTGGTACTATGGTCATTCGTCCTTATGGTTACGCGATCTGGGA 369
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 298 CGATTATGGTCCGGTTCGTGGTACTATGGTTATTCGTCCTTATGGTTACGCGATCTGGGA 357
Query 370 AGCGATTCAGGATTATTTGAATGTGAAGTTCAAAGAGACTGGTCATAGCAACATGTACTT 429
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 358 AGCGATTCAGGAGTATTTGAATGTGAAGTTCAAAGAGACTGGTCATAGCAACATGTATTT 417
Query 430 CCCACAGTTTATACCATACTCGTTTATTGAGAAAGAAGCTTCACACGTTGAGGGATTTAG 489
||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 418 CCCACAGTTTATACCATACTCTTTTATTGAGAAAGAAGCTTCACATGTTGAGGGGTTTAG 477
Query 490 TCCTGAACTAGCTCTTGTTACTGTTGGAGGAGGAAAAGAACTTGAGGAGAAACTTGTGGT 549
|||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 478 TCCTGAACTAGCCCTTGTTACTGTGGGAGGAGGAAAAGAACTTGAGGAGAAGCTTGTGGT 537
Query 550 TCGGCCTACTAGTGAAACCATAGTGAATCATATGTTTACCCAGTGGATTCACAGCTATCG 609
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 538 TCGGCCTACCAGTGAAACCATAGTGAATCACATGTTTACCCAGTGGATTCACAGCTATCG 597
Query 610 TGATCTTCCTCTCATGATTAATCAGTGGGCCAATGTCACTAGATGGGAAATGCGGACGAA 669
|||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 598 TGATCTTCCTCTTATGATCAATCAGTGGGCCAATGTCACTAGATGGGAGATGCGGACAAA 657
Query 670 ACCATTTATTAGGACTCTTGAATTTCTATGGCAAGAGGGTCATACTGCTCATGCCACTCC 729
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 658 ACCATTTATTAGGACTCTTGAGTTTCTATGGCAAGAGGGTCATACTGCTCATGCCACTCC 717
Query 730 TGAGGAGGCAGAAAAGGAGGCGAAACAGATGATCGAGATCTACACCAGATTTGCTTTTGA 789
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 718 TGAGGAGGCAGAAAAGGAGGCAAAACAGATGATCGAGATCTACACCAGATTTGCTTTTGA 777
Query 790 GCAAACTGCAATTCCTGTTATTCCAGGTCGAAAATC-AAAGTTAGAGACTTTTGCTGGTG 848
|||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 778 GCAAACTGCAATACCTGTTATTCCAGGTCGAAAATCTAAA-TTAGAGACTTTTGCTGGTG 836
Query 849 CTGATATAACCTATACTATTGAGGCTATGATGGGAGATCGGAAGGCTTTGCAGGCTGGTA 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CTGATATAACCTATACTATTGAGGCTATGATGGGAGATCGGAAGGCTTTGCAGGCTGGTA 896
Query 909 CTAGCCACAATTTAGGCCAGAACTTTTCTCGTGCCTTTGGAACTCAGTTTGCAGATGAGA 968
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CTAGCCACAATTTAGGGCAGAACTTTTCTCGTGCCTTTGGAACTCAGTTTGCAGATGAGA 956
Query 969 ATGGAGAAAGGCAACATGTGTGGCAGACATCATGGGCAGTCAGTACACGTTTTGTTGGTG 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 957 ATGGAGAAAGGCAACATGTGTGGCAGACATCATGGGCAGTCAGTACACGTTTTGTCGGTG 1016
Query 1029 GCATTATCATGACTCACGGAGATGACACTGGTCTCATGCTTCCTCCCAAGATAGCTCCAA 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GCATTATCATGACTCACGGAGATGACACTGGTCTCATGCTTCCTCCCAAGATAGCTCCAA 1076
Query 1089 TACAGGTAGTAATTGTACCTATTTGGAAAAAGGACACTGAGAAAACAGGAGTTCTCAGTG 1148
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1077 TACAGGTAGTAATTGTACCTATCTGGAAAAAGGACACTGAGAAAACAGGAGTTCTCAGTG 1136
Query 1149 CTGCATCATCAGTGAAAGAAGCTCTCCAAACTGCTGGTGTTAGAGTTAAACTTGATGACA 1208
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1137 CTGCATCATCAGTGAAGGAAGCTCTCCAAACTGCTGGGGTTAGAGTTAAACTTGATGACA 1196
Query 1209 CAGATCAAAGAACCCCAGGATGGAAGTTCAATTTCTGGGAAATGAAGGGAATCCCTCTAA 1268
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 CAGATCAACGAACCCCAGGATGGAAGTTCAATTTCTGGGAAATGAAGGGAATCCCTCTAA 1256
Query 1269 GGATTGAAATTGGTCCACGCGATGTATCTAGTAACAGTGTCGTAGTCTCGAGGAGGGATG 1328
||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||
Sbjct 1257 GGATTGAAATTGGTCCACGCGATGTATCTAGTAACTCTGTGGTTGTCTCGAGGAGGGATA 1316
Query 1329 TACCAGGAAAGGCAGGAAAAGTTTTTGGAATATCAATGGAGCCATCAACATTAGTGGCGT 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 TACCAGGAAAGGCAGGAAAAGTTTTTGGAATATCAATGGAGCCATCAACATTAGTGGCGT 1376
Query 1389 ATGTAAAAGAGAAGTTGGATGAGATCCAAACATCTCTTCTAGAGAAGGCGTTATCATTCA 1448
||||||||||||||||||||||||||||| |||| ||| |||| ||||| ||||||||||
Sbjct 1377 ATGTAAAAGAGAAGTTGGATGAGATCCAATCATCGCTTTTAGAAAAGGCTTTATCATTCA 1436
Query 1449 GAGACAGTAACATTGTGGATGTAAACTCATACGCTGAGCTCAAAGACGCAATTTCATCAG 1508
|||| || ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||
Sbjct 1437 GAGATAGCAACATTGTGGATGTAAACTCATACGATGAGCTCAAAGACGCCATTTCTTCAG 1496
Query 1509 GGAAATGGGCAAGAGGTCCTTGGTCAGCCAGTGACGCAGATGAGCAAAGAGTAAAAGAAG 1568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 GGAAATGGGCAAGAGGTCCTTGGTCAGCCAGTGACGCAGATGAGCAAAGAGTAAAAGAAG 1556
Query 1569 AAACCGGAGCAACCATTCGTTGTTTCCCGTTTGAACAAACTCAAGGGACCAAAACATGCC 1628
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1557 AAACAGGAGCAACCATTCGTTGTTTCCCGTTTGAACAAACTCAAGGGACCAAAACATGTC 1616
Query 1629 TAATGACTGGAAATCCAGCAGAAGAAGTTGCAATCTTTGCCAAGTCATATTAAACTAGGT 1688
||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||
Sbjct 1617 TAATGACTGGAAATCCAGCAGAAGAAGTTGCTATCTTTGCCAAGTCATACTAAAGAAGGT 1676
Query 1689 CGTTACACTTTCACACATT-CCCAATCATATCAAATTCTCTTTATTAAAAAGGTCCAAAA 1747
| || |||||||||||||| |||||||||||||| |||| ||||||||||||||||||||
Sbjct 1677 CCTTTCACTTTCACACATTTCCCAATCATATCAA-TTCTATTTATTAAAAAGGTCCAAAA 1735
Query 1748 GTGACATTAGTTTCTATTTCCGTGGCTATTGGAGTGGAATAATTGTAGTCCTTTGGTCA- 1806
|||||| ||| |||| ||||||||| |||||||||||| | ||||||||||||||||||
Sbjct 1736 GTGACAATAGATTCTGTTTCCGTGGTTATTGGAGTGGAGTGATTGTAGTCCTTTGGTCAG 1795
Query 1807 -TGGATC--CT--CTCTGGTAGTACAGAATTAAATGCTACTTTGGTCGGAGATTCC---- 1857
| || || ||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1796 ATCTATGGACTATCTCTGGTAGTACAGAATTAGATGCTACTTTGGTCGGAGATGCTTTTG 1855
Query 1858 A--A-TTCATATTTTGTTTTGTTACGCAAGTGCAATATAATACGTTGACTTTTCATTTAT 1914
| | |||||||||||||||||| ||||| ||||||| |||| |||||||||||||||||
Sbjct 1856 ATGAATTCATATTTTGTTTTGTTTCGCAATTGCAATACAATATGTTGACTTTTCATTTAT 1915
Query 1915 TGTTATTGTCTTTGTCTTTGATAGTTTAATGTGAAAAAATAACAAAAATATCATTTTGCT 1974
| || | | ||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1916 T-TT-T-G------------ATAGTTTAATGTGGAAAAATAACAAAAATCTCATTTTGCT 1960
Query 1975 ATCGACTTCGTT 1986
||||||||||||
Sbjct 1961 ATCGACTTCGTT 1972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74656880200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5