BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52530.1
Length=3254
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949816 jgi|Araly1|949816|scaffold_801703.1 3199 0.0
Ahg329104 jgi|Araly1|329104|fgenesh1_pm.C_scaffold_7001331 351 1e-95
> Ahg949816 jgi|Araly1|949816|scaffold_801703.1
Length=2580
Score = 3199 bits (1732), Expect = 0.0
Identities = 2070/2230 (93%), Gaps = 36/2230 (2%)
Strand=Plus/Plus
Query 445 CAGAGCTTCCTTGGAAACCGGTGGCTAAAGGTAGCAGAAGTTCAACAAGGCGTGGCAAGA 504
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 41 CAGAGCTTCCTTGGAAAAAGGTGGCTAAAGGTAGCAGAAGTTCAACAAGGCGTAGCAAGA 100
Query 505 AACTAGTTAAACGAGTTGC-AGCTTCAGATATTGAGTCAGAAGACAAGAGTTCAACACAC 563
||| |||| ||| ||| | ||| |||| ||||||| |||||| ||||||||| | |||
Sbjct 101 AACCAGTTGTACGTGTT-CAAGCCTCAGGTATTGAGGCAGAAGCCAAGAGTTC-A-ACAG 157
Query 564 ACACTAGTAGCAGGAGAATCAAAGCGTCCAAAGCTTGGCGTTTCTGTTCTAGGTCAGCAT 623
|||| || |||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct 158 GCACT-GTGGCAGGAAAATCAAAGCCTGAAAAGCTTGGCGTTTCTGTTCTAGGTCAGCAT 216
Query 624 TTCGTTGAAAGAGTAGAGCATGTTCCGATTAAGAAACGGATATTTGTGGTTAGCTCTCCA 683
|||| |||||||||||||||||||||||| |||||||||| |||| | ||| | || |
Sbjct 217 TTCGCTGAAAGAGTAGAGCATGTTCCGATAAAGAAACGGAGATTTATTGTT--CGCT-C- 272
Query 684 TCACCATCACCATCATCATCAAAGAGGTCATCTGCTCAACGTGAAGGCTCAGAACATAAG 743
| || | || | ||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct 273 T--CCGT---CA-C--CATCAAAGAGGCCTTCTACTCAACGTGAAGGCTCAGAACATAAG 324
Query 744 GCACAGATCAACCATGTTTTACCTGTTTCGAGATTAAACCCTAATTTGGTCTCAGACGTC 803
|| ||||||||||||| ||| |||||||||||||||||||||||||| | |||||||||
Sbjct 325 GCGCAGATCAACCATGCTTTGCCTGTTTCGAGATTAAACCCTAATTTAATTTCAGACGTC 384
Query 804 CGTGATGAAAAGCCTGATTACAGTGTTCATGACTTTTCTGGTATCAAGATACTTGCTGAT 863
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 385 CGTGATGAAAAGCCTGATTGTAGTGATCATGACTTTTCTGGTATCAAGATACTTGCTGAT 444
Query 864 GCTGCTTGCAGTACTGATGTGAGTAATGATTTTGCACCAGCTGTAGACCGTCTGCCTGCT 923
|||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 445 GCTGCTTGCAGTGCTGACGTGAGTAATGATTTTGCACCAGCTGTAGACTGTCTGCCTGCT 504
Query 924 GAAGAATTTGCTGTTCAGCTACAAGATACCTCAACCATATCAACTCATGTTGAAGGTAAC 983
||||||| || |||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct 505 GAAGAATCTGTTGTTCAGCAACAAGATACATTGACCATATCAACTCATGTTGAAGGTAAC 564
Query 984 GATTCATCAGCTGGAACTGCTGATGTCTCGCATACTGCGGTTGATTCCGGTGATCAGAGT 1043
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 565 GATTCATCAGCTGGAACTGCTGATGTCTCGCATACCGCGGTTGATTCCGGTGATCAGACT 624
Query 1044 GGCCAAGGAAAGAGCAATATTGTAGCGCCTCAGAAACATCCTCTAACAAATTTGTGCAAT 1103
|| ||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 625 GGGCAAGGCAAGAGCAATATTATAGCGCCTCAGAAATATCCTCTAACAAATTTGTGCAAA 684
Query 1104 GAGTTGGCTGATGAGCAGAGTGTAGAGCACAGCAGAGTAACCTCTGGAGGGATTATAGCA 1163
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 685 GAGTTGGCTGATGAGCAGAGTGTAGAGCACAGCAGAGTGACCTCTGGAGGGATGATAGCA 744
Query 1164 CCTaaaaaaaCCT-GCATTGCTCTTTCAAATGAATCCTCAACAGAAAGACCAAAGGATAA 1222
|||||||||| || ||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 745 CCTAAAAAAA-CTAGCATTGCTCTTTCAAATGAATCCTCAACAGAAAGACCGAAGGCTAA 803
Query 1223 TGTAGAAGCAAGTGAAAGTGAACCTTTAGCACCTGATAGTGGAGCTGTAACGGTGTCAGA 1282
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 804 TGTAGAAGCAGGTGAAAGTGAAACTTTAGCACCTGATAGTGGAGCTGTAACGGTGTCAGA 863
Query 1283 GAAATTATCAGCCGATGAGCCAACTGaaaaaaaCAATGAAGGCCTTAAAGATGTTAAATT 1342
||||| |||||||| ||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 864 GAAATCATCAGCCGTTGAGCCAACTGAAAAGAACAGTGAAGGCCTTAAAGATGTTAAATT 923
Query 1343 TCTCTGGGATTTAAATATTCCTTGTGATGTAGAAGATGAAGCGTCTCGAAGAGATGAAGA 1402
| ||||||||||||| ||||||||||||||||||||||||| ||| ||||||||| |||
Sbjct 924 CCACTGGGATTTAAATTTTCCTTGTGATGTAGAAGATGAAGCCTCTGGAAGAGATGTAGA 983
Query 1403 GGGAGAAATCACAGAGTCTATTGCCCCTAAAGGGAGCGAACCTTTTGATGGAAGTAAACA 1462
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
Sbjct 984 GGGAGAAATCACAGAGTCTATTGCCCCTAAAGAGAGCGAACGTTTTGATGGAAGTAAGGA 1043
Query 1463 CAGTATGGATGGGGTAATTGCATCAGATGAACATACAAAATTTTCATCACCATCTAAGCC 1522
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1044 CAGTATGGATGGGGTAATTGCATCAGATGAACATACAAAATTTTCATCACCATCTGGGCC 1103
Query 1523 TAATGA-TGAAGCAGCTGCTACAAATGACAAGGATTGCCAATCTGGTTATGACTCCCAGT 1581
|||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1104 TAAT-ACTGAAGCAGCTGCTACAAATGACAAGGAGTGCCAATCTGGTTATGACTCCCAGT 1162
Query 1582 TTGAGGATGGAGAGTTGAGGGAACCATACCCTTGGGAAGAAAATGAAGAGGTTGAACAGT 1641
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1163 TTGAGGATGGAGAGTTGAGGGAACCATACCCTTGGGAAGAAATTGGAGAGGTTGAACAGT 1222
Query 1642 TGGATTACGGTTCTGAGCCAGAGGATGAGAGATTCTACTCTATGGGTTCTGAGAAGGGAA 1701
|||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1223 TGGATTACGGGTCTGAGCCAGAGAATGAGAGATTCTACTCTATGGATTCTGAGAAGGGAA 1282
Query 1702 TCTTGACAGATGAGAATTTCAGTCATGTTAAGTGTGAATCTGGTGATGCACTGAGAGTTG 1761
||||| |||| |||||||||| || |||||||||||||||||||||||||||||| |||
Sbjct 1283 TCTTGGCAGACAAGAATTTCAGACACGTTAAGTGTGAATCTGGTGATGCACTGAGAATTG 1342
Query 1762 GGCAGGCTAATGAAGGAAGTGACATAGAGAAGCAAGCTGTTGTAAACATGAGCGATTCAC 1821
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1343 GGCAGGCTAATGAAGGGAGTGACATAGAGAAGCAAGTTGTTGTAAACATGAGCGATTCAC 1402
Query 1822 ATCCTAAGAAGGGCTCTTCTTCTCCTTCAAGGAGTTTTGGTTCAAAACCATACAAGGAGG 1881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1403 ATCCTAAGAAGGGCTCTTCTTCTCCTTCAAGGAGTTTTGGTTCAAAACCATACAAGGTGG 1462
Query 1882 TGCCTTCACATGATGCAATCCAGAGGAGAAGGCCTGATACTTATGAAGAGGTGAGCACGG 1941
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1463 TGCCTTCACATGATGCCATCCAGAGGAGAAGGCCTGATACTTATGAAGAGGTGAGCACGG 1522
Query 1942 GTCCAGATAGGTTTGCTCGGAGAGACGACAGGTCAGGGATGCGTATGCGTAATCGGAGTC 2001
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1523 GTCCAGATAGGTTTGCTGGGAGAGACGACAGGTCAGGGATGCGTATGCGTAATAAGAGTC 1582
Query 2002 CTCAAAGAGGGTATTTTAGTGGTTGGGATTCCAAACGACGCTTCTCCCCTCCTAATTACA 2061
||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1583 CTCGGAGAGGGTATTTTAATGGTTGGGATTCCAAACGACGCTTCTCCCCACCTAATTACA 1642
Query 2062 AAGATGGTTCTTATGGTTCCGGGCGTCCATGGCATAAAAGAATGGCAGATGATCGAGGTA 2121
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1643 AAGATGGTTCCTATGGTTCCGGGCGTCCATGGCCTAAAAGAATGGCAGATGATCGAGGTA 1702
Query 2122 TGATGAAC---GGCTTTGATGAGTCAGGGTCAGGACAAGGACCAGGACCAGAACCAGAAC 2178
|||||||| ||||||||||| ||||||||||||| | |||||||||||||||
Sbjct 1703 TGATGAACAACGGCTTTGATGAATCAGGGTCAGGAC-----C-AGGACCAGAACCAGAT- 1755
Query 2179 CAGAGGGTTATGTTCGTAGGCAATTCTCAAATGGTGGATACAGAGGTCGGTTTAAGAGAT 2238
| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1756 --G-G--TTATGTACGTAGGCAATTCTCAAATGGTGGATACAGAGGTCGGTTTAAGAGAT 1810
Query 2239 TCCCAGATGGTGGGGATCGTAAATTCAGGGGCCCATACACTGATACAAACCAATTTTCTG 2298
||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||| |||
Sbjct 1811 TCCCAGATGGTGGGGATCGTAAATTCAGGGGCCCACACAGTGATACCAACCAATTTCCTG 1870
Query 2299 GTCGGATGCACAACCGGATGAGTGGTAATAGGAGAGAGAGAGGTGGCTCTCCGGTTGTCA 2358
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1871 GTCGGATGCAGAACCGGATGAGTGGTAATAGGAGAGAGAGAGGTGGCTCTCCGGTCCTGA 1930
Query 2359 GGAGATTGCACCACCCGCAATCAGAGTCAAGATCCAGAAGCCGTTCTCCAGTCTTGTGGA 2418
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1931 GGAGATTGCACTACCCGCAATCAGAGTCAAGATCCAGAAGCCGTTCTCCAGTCTCGTGGA 1990
Query 2419 ATGGCCGTAACAGATCACCTCCTCCTCCTCCAGGTGGGTTTAGAGCAGACGAGAGGATGA 2478
|| |||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1991 ATAGCCGTAACAGATCATCTCCTCCTCCTCCAGGTGGGTTAAGAGCAGACGAGAGGACGA 2050
Query 2479 CGGAAAGAGTGAGGCTGCCTTTCCAGAAACGGTTTCCTGCAGATCAGGAGATGGGTTATA 2538
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2051 CGGAAAGAGTGAGGTTGCCTTTCCAGAAACGGTTTCCTGCAGATCAGGAGATGGGTTACA 2110
Query 2539 TGTCACCTCCGAGAAACAGAATGTCGTCGCCGAGGTTCTTTGAAGGGAGGAATAATGGTG 2598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2111 TGTCACCTCCGAGAAACAGAATGTCGTCGCCGAGGTTCTTTGAAGGGAGGAATAATGATA 2170
Query 2599 CTGGAGAGAATTATAATAGCTTCAGAGAAAGGAAGTTCCGGCCTGGACAGAGATTTTATG 2658
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 2171 CTGGAGAGAATCATAATAGCTTCAGGGAAAGGAAGTTCCGGCCTGGACAGAGATTTGATG 2230
Query 2659 TCGGAAATTC 2668
||||||||||
Sbjct 2231 TCGGAAATTC 2240
Score = 466 bits (252), Expect = 5e-130
Identities = 310/337 (92%), Gaps = 8/337 (2%)
Strand=Plus/Plus
Query 2589 AATAATGGTGCTGGAGAGAATTATAATAGCTTCAGAGAAAGGAAGTTCCGGCCTGGACAG 2648
||| ||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 2248 AATGATGATGCTGGAGAGAATCATAATAGCTTCAGGGAAAGGAAGTTCCGGCCTGGACAG 2307
Query 2649 AGATTTTATGTCGGAAATTCCATGAGAAGACCGAATTCTGACAACAACAACTTAAGACCA 2708
|||||| |||||||| |||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 2308 AGATTTGATGTCGGACATTCTATGAGAAGACCGAATTCTGACAACAACAACTTGAGACCA 2367
Query 2709 TTTATTCCGAACAGAAGATTTGACAATC-CGGAAGAGAGCACTGGTGGGAACAGGTTTGA 2767
||||||| ||||||||||||||| | | ||||||||| ||||||| |||||||||||||
Sbjct 2368 TTTATTCGGAACAGAAGATTTGA-AGGCACGGAAGAGAACACTGGTCGGAACAGGTTTGA 2426
Query 2768 GATGACTCAGCAGCGAAGGACTCGACGGTCTGAGACCACAGAAGATGGAGGTGATGTTAT 2827
|||| |||||||||| |||||||| ||||||||| |||||||||| |||||||||| |||
Sbjct 2427 GATGGCTCAGCAGCGGAGGACTCGGCGGTCTGAGGCCACAGAAGAGGGAGGTGATGATAT 2486
Query 2828 TCGACGGTTCAAGTTTAATGAAGAACAACAGTCAGTGGTGGTAG-C--CAACGACAACAA 2884
||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 2487 TCGACGGTTCAAGTTTAATGAAGAACAAC---CAGTGGTGGTAGCCAACAACGACAACAA 2543
Query 2885 CAACAAAGAGTCATGATAACAGATAACGTAAGAGACT 2921
|||||||||||||||||||||||||||||||||||||
Sbjct 2544 CAACAAAGAGTCATGATAACAGATAACGTAAGAGACT 2580
> Ahg329104 jgi|Araly1|329104|fgenesh1_pm.C_scaffold_7001331
Length=2454
Score = 351 bits (190), Expect = 1e-95
Identities = 974/1329 (73%), Gaps = 148/1329 (11%)
Strand=Plus/Plus
Query 450 CTTCCTTGGAAACCGGTGGCT---AAAGGTAGCAGAAGTTCAACAAGGCGTGGC-AAGAA 505
|||||||||||| ||||||| ||||||||||| ||||| |||||||| | | |||||
Sbjct 49 CTTCCTTGGAAAGTGGTGGCTACAAAAGGTAGCAGGAGTTCGACAAGGCG-GACTAAGAA 107
Query 506 ACTAGTTAAACGAGTTGCAGCTTCAGATATTGAGTCAGA-AGACAAGAGTTCAACA--CA 562
|| | || || || |||||| ||||||||||| |||| | |||| |||| || |
Sbjct 108 ACAAATTGCACTAGCTGCAGCCCCAGATATTGAGGCAGATTG-TAAGACTTCAGCAGGTA 166
Query 563 CACACTAGTAGCAGGAGAATCA-AAGCGTCCAAAGCTTGGCGTTTCTGTTCTAGGTCAGC 621
| | | || || |||||| ||| || || ||||||||||||||||||||| || ||||
Sbjct 167 C-CGC-AGCAGAAGGAGATTCAGAATCG-GAAAAGCTTGGCGTTTCTGTTCTGGGCCAGC 223
Query 622 ATTTCGTTGAAAGAGTAGAGCATGTTCCGATTAAGAAACGGATATTTGTGGTTAGCTCTC 681
|||| | |||||||||||||||||||| || |||||||||| |||| ||| | || |
Sbjct 224 ATTTTGCAGAAAGAGTAGAGCATGTTCCAATAAAGAAACGGAGATTTATGG-T---TC-C 278
Query 682 CATCACCATCACCATCATCATCAAAGAGGTCATCTGCTCAACGTGAAGGCTCAGAACATA 741
| || |||||||| | | | || | ||||||||||| ||||||||||| |||||
Sbjct 279 C-TCTCCATCACC-T--T--T-GAATAAGTCATCTGCTCGTGGTGAAGGCTCAAAACAT- 330
Query 742 AG-GCACAGATCAACCATGTTTTACCTGTTTCGAGATTAAACCCTAA-TT--T-----GG 792
| | ||| |||||||| | | |||||||||| || |||||||| || | ||
Sbjct 331 CGTTTAGAGACCAACCATGCTCTGCCTGTTTCGATTTTGAACCCTAATTTAATGGGACGG 390
Query 793 ---TC-TCAGACGTC-CGTGATGA-AAAGCCTGATTACAG-TGTTCATGACTTTTCTGGT 845
| |||| ||| | |||||| ||| || |||| ||| | ||||||||| ||||||
Sbjct 391 AAAACAGCAGAAGTCTC-TGATGATAAA-CCCGATTGCAGCAG-TCATGACTTCTCTGGT 447
Query 846 ATCAAGATACTTGCTGATGCTGCTTGCAGTACTGATGTGAGTAATGATTTTGCA-CCAGC 904
|| ||||||||||| || | ||||||||||| || | ||| || |||| ||||| || ||
Sbjct 448 ATTAAGATACTTGCAGAAGTTGCTTGCAGTAGTGGTATGATTAGTGATATTGCATCC-GC 506
Query 905 TGTAGACCGTCTGCCTGCTGAAGAATTTGCTGTTCAGCTA-CAAGATACCTCAACCATAT 963
| |||| ||| ||||| | ||| | |||||||| | |||||| | | ||| |||
Sbjct 507 AGCAGACAGTCAGCCTG-T--TGAA-CT--TGTTCAGC-AGCAAGATGCTTTGACCTTAT 559
Query 964 CAACTCATGTTGAAGGTAACGATTCATCAGCTGGAACTGCT-GATGTCTC---G---CAT 1016
| |||||||| |||||||| ||||||||| |||| | || | |||||||| | ||
Sbjct 560 CTACTCATGTGGAAGGTAATGATTCATCAACTGGCATTG-TCGATGTCTCTGAGAAAGAT 618
Query 1017 ACTGCGGTTGATTCCGGTGATC-AGAG-TGGCCAAGGA-AAGAGC-AATATTGTAGCGCC 1072
||| | |||| ||| |||| | || | ||| || || |||||| || || ||| |||
Sbjct 619 ACTACAATTGAATCCAGTGA-CAAG-GTTGGGGAA-GACAAGAGCGAA-ATCATAGTGCC 674
Query 1073 TCAGAAACATCCTCT-AA-CA-AATTTGTGCAATGAGTTGGCTGA-TGAGCAGAGTGTAG 1128
|| ||| | ||| || | | || | | |||| |||||| | ||| ||||||| ||
Sbjct 675 TC-TAAA-A-GTTCTGAATGATACTTCGGGTAATGCTTTGGCT-ACTGATCAGAGTGAAG 730
Query 1129 AGCACAGCAGAGTAACCTCTGGAG-GGATT-ATAGCACCTaaaaaaaCCTGCATTGCTCT 1186
| || || | ||| | ||| || || || |||| || | || | | |||||||| |
Sbjct 731 AACATAGTATAGTTGCATCT--AGTGGTTTGATAGTGGCTCAGAACATCAGCATTGCTGT 788
Query 1187 TTCAAATGAATCCTCAACAGAAAGACCAAAGGATAATGT-A-GAAGCAAGTGAAAG-TGA 1243
|||||||||||||||||||||| | |||||||| ||| | | ||||| |||| || ||
Sbjct 789 TTCAAATGAATCCTCAACAGAAGGGCCAAAGGA-AAT-TAAGGAAGCTGGTGATAGCGGA 846
Query 1244 ACCTTTAGCACCTGATAGTGGAG-CTGTAACGGTGTCAGAGAAATTATCAGCCGATGAGC 1302
| |||||||||| ||| | ||| |||| || |||||||||||||||| | |||||||
Sbjct 847 A-ATTTAGCACCTCATAAT-GAGACTGTCACTATGTCAGAGAAATTATCTGGTGATGAGC 904
Query 1303 -CAACT-Gaa-----aaaaaCAATGAAGGCCTTAAAGATGTTAAATTTCTCTGGGATTTA 1355
| ||| ||| || | || |||| | |||| ||||| || || ||||||||||||
Sbjct 905 GC-ACTGGAATGGGTAAGAGCACTGAATGTCTTACAGATGATAGGTTACTCTGGGATTTA 963
Query 1356 AA---T-------A----T----T---CCTTGTGATGTAGAAGATGAAGCGTCTCGAAGA 1394
|| | | | | ||| ||||||||| ||||||| || ||||||
Sbjct 964 AATCTTCCAACCGATGCGTGGGGTCAACCTGGTGATGTAGTTGATGAAGTATCCCGAAGA 1023
Query 1395 GATGAAGAGGGAGAAATCACAGAGTCTATTGCCCCTAAAGGGAGCGAACCTTTTGATGGA 1454
|| || ||||| |||| ||||| || || || || | || | |||||||
Sbjct 1024 TATTCTGATAGAGAAGTCACTGAGTC---TG---TTACAGAGAATGGACATGTTGATGGT 1077
Query 1455 AGTAAACACAGTAT--GGATGGGGTAATTGCATCAGATGAACATACAAAATT-TTCATCA 1511
||||| || ||| || ||| | |||||||||||| || || |||| | ||||
Sbjct 1078 AGTAAGGAC--TATGCGGCTGGCCTGATTGCATCAGATTTGCAGAC-GAATTCTCCATCC 1134
Query 1512 CCATCTAAGCCTAATGATGAAGCAGCTGCTAC-AAATGACAAGGATTGCCAATCTGGTTA 1570
|| ||| ||| || | |||||| |||| | ||||| ||||| ||||||||||||||
Sbjct 1135 CCGTCTGGGCCCAAGGCTGAAGCCTCTGC-CCGAAATGGGAAGGAGTGCCAATCTGGTTA 1193
Query 1571 TGACTCCCAGTTTGAGGATGGAGAGTTGAGGGAACCATACCCTTGGGAAGAAAATGA--- 1627
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TGATTCCCAGTTTGAGGATGGAGAGTTGAGGGAACCATACCCTTGGGAAGAAAATGAGGG 1253
Query 1628 --A--G---AG--GTTGAACA-GTTGGATTACGGTTCTGAGCCAGAGGATGAGAGATTCT 1677
| | || |||||||| || |||||| || |||||||||||| ||||| ||||||
Sbjct 1254 CGACAGTGGAGATGTTGAACAAGT-GGATTATGGGTCTGAGCCAGAGAATGAGCGATTCT 1312
Query 1678 ACTCTATGG 1686
||||| |||
Sbjct 1313 ACTCTTTGG 1321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122811788071
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5