BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G52540.1 Length=1708 Score E Sequences producing significant alignments: (Bits) Value Ahg949817 jgi|Araly1|949817|scaffold_801704.1 2213 0.0 > Ahg949817 jgi|Araly1|949817|scaffold_801704.1 Length=1440 Score = 2213 bits (1198), Expect = 0.0 Identities = 1365/1444 (95%), Gaps = 17/1444 (1%) Strand=Plus/Plus Query 59 TCGTGAAGCAGACGCGACAAATGGCGACGAGCTTGCCATTACTCAATGTGATCGGAAACT 118 ||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| || Sbjct 1 TCGTGAAGCAGACGCGACAAATGGCGATGAGCTTGCCGTTACTCAATGTGACCGGAATCT 60 Query 119 CGTTACCGTCGTCGTCGAGACTATTTCGTCGGCGTTCGTACATTGTTTCACGCCAAGATC 178 ||||| | ||||||||||||||||||| |||||| | |||||||||||||| |||||| Sbjct 61 CGTTA-C--CGTCGTCGAGACTATTTCGCCGGCGTCCACACATTGTTTCACGCAAAGATC 117 Query 179 TACCTGAATTCTCAGCTAAATCAACCTCTTCAAGGCTTAGCTTCTCTCCTGCTTCGTTGT 238 | ||||||||||| |||||| || ||||||| ||||||||||||||||||||||||||| Sbjct 118 TTCCTGAATTCTCGGCTAAAGCAGTCTCTTCACGGCTTAGCTTCTCTCCTGCTTCGTTGT 177 Query 239 CGCAATTTCGTAACGGAACCGACAGG-TT-TCT-----G--TCG---CCGGAATCATCAT 286 |||||||||||||||||| ||||||| || ||| | ||| ||||||||||| | Sbjct 178 CGCAATTTCGTAACGGAAGCGACAGGTTTCTCTCGCCGGATTCGTTACCGGAATCATCTT 237 Query 287 CTCCGATCCGATCGGTTACTGTGAGTTCGTTGAGTACGCCTCTCATTTCTCCCAACGATG 346 |||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| Sbjct 238 CTCCGATCCGATCGGTGACTGTGAGTTCGTTGAGTACACCTCTCATTTCACCCAACGATG 297 Query 347 AATGGGGAACTTGGACTGCTCTCTTCGCTACTGGTGCTCTCGGTCTCTGGTCGGAGAAGA 406 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | Sbjct 298 AATGGGGAACTTGGACTGCTCTCTTCGCCACTGGGGCTCTCGGTCTCTGGTCGGAGAATA 357 Query 407 CAAAGGTCGGAGCCGCTATGAGTGGTGCGTTAGTCAGCACTCTAGTTGGTCTTGCAGCTA 466 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 358 CAAAGGTCGGAGCCGCGATGAGTGGTGCGTTAGTCAGCACTCTAGTTGGGCTTGCAGCTA 417 Query 467 GTAATCTAGGGATCATTTCTTCTCAAGCTCCTGCTTTTGCTGTTGTGTTGAATTTTCTGC 526 ||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |||| Sbjct 418 GTAATCTAGGGATTATTTCTTCCCAAGCTCCTGCTTTTGCTGTAGTGTTGAATTTCCTGC 477 Query 527 TTCCATTAGCTGTTCCTCTGTTGTTGTTTAGAGCTGATTTGCGTCGTGTGGTTCAGTCCA 586 | || |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 478 TCCCTTTAGCTGTTCCTCTGTTGTTGTTTAGAGCTGATTTGCGCCGTGTGGTTCAGTCCA 537 Query 587 CTGGAAAGCTTCTCTTGGCCTTTTTGATTGGATCAGTTGCCACAACGGTGGGTACAGCTC 646 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 538 CTGGAAAGCTTCTCTTGGCTTTTTTGATTGGATCAGTTGCCACAACGGTCGGTACAGCTC 597 Query 647 TGGCATACTATTTAGTGCCAATGAAGTCACTTGGCCCTGATAGTTGGAAGATTGCAGCTG 706 ||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 598 TGGCATACTATCTAGTGCCAATGAAATCACTTGGGCCTGATAGTTGGAAGATTGCAGCTG 657 Query 707 CTCTCATGGGAAGACATATCGGTGGAGCCGTCAACTACGTAGCTATATCAAATGCTCTTG 766 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 CTCTCATGGGAAGACATATCGGTGGAGCCGTCAACTACGTAGCTATATCAAATGCTCTTG 717 Query 767 GAGTTACACCATCGGTTTTAGCTGCTGGACTGGCTGCTGATAATGTTATATGCGCTGTAT 826 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 GAGTTACACCATCGGTTTTAGCTGCTGGACTGGCTGCTGATAATGTTATATGCGCTGTAT 777 Query 827 ATTTCACGACATTGTTTGCTTTGGGCTCCAAAATACCTGCAGAAGCTGTACCGCCACCGA 886 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 ATTTCACTACATTGTTTGCTTTGGGCTCCAAAATACCTGCAGAAGCTGTACCGCCACCGA 837 Query 887 CTACT-ATTGTAGATGCAGAGACGAACGAAGCTTCTGAAACTAAAAATAAAATTCCTGTG 945 ||||| || | | |||||||||||||| ||| ||||||||||||||| |||||||||||| Sbjct 838 CTACTGAT-GCAAATGCAGAGACGAACCAAGTTTCTGAAACTAAAAACAAAATTCCTGTG 896 Query 946 CTACTGATAGCTACTGGAATTGCTGTGTCATTAGCTATCTGCAAGGCTGGGGCTTTGCTA 1005 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 897 CTACTGATAGCTACTGGAATTGCTGTGTCATTAGCTATATGCAAGGCTGGGGCTTTGCTA 956 Query 1006 ACAAAGTACTTCGGAATTTCGGGTGGTAGCTTACCGGCTATAACAGCGGTTGTTGTTATT 1065 ||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 957 ACAAAGTACTTTGGGATTTCGGGTGGTAGCTTACCGGCCATAACCGCGGTTGTTGTTATT 1016 Query 1066 TTAGCAACTGTCTTTCCGTCCCAGTTTGGTCGTCTTGCTCCATCTGGAGAAGCCATGGCT 1125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1017 TTAGCAACTGTCTTTCCGTCCCAGTTTGGTCGTCTTGCTCCATCTGGAGAAGCCATGGCT 1076 Query 1126 CTAATTTTGATGCAGGTGTTCTTCACAGTGGTGGGTGCAAGCGGAAACATATGGAGTGTG 1185 || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1077 CTGATTCTGATGCAGGTGTTCTTCACAGTGGTGGGTGCAAGCGGAAACATATGGAGTGTG 1136 Query 1186 ATCAACACGGCGCCGAGCATATTCTTGTTTGCATTGGTTCAAATTGGGACACATCTGGCT 1245 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 1137 ATCAACACGGCGCCGAGCATATTCTTGTTTGCGTTGGTTCAAATTGGGACACATCTAGCT 1196 Query 1246 GTGATATTGGGCATAGGAAAGCTGCTAAACATCGAGCTAAGGTTACTGCTTCTAGCATCA 1305 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1197 GTGATATTGGGTATAGGAAAGCTGCTAAACATCGAGCTAAGGTTGCTGCTTCTAGCATCA 1256 Query 1306 AATGCTAATGTCGGAGGACCCACGACCGCAGCTGGAATGGCGACGGCAAAGGGATGGAAC 1365 |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 1257 AATGCTAATGTCGGAGGACCCACGACTGCAGCTGGAATGGCGACAGCAAAGGGATGGAAC 1316 Query 1366 TCGTTGATAGTTCCCGGGATTCTGGCCGGAATATTTGGGATCGCCATTGCAACTTTCATA 1425 |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| || Sbjct 1317 TCGTTGATAGTTCCAGGGATTCTGGCGGGAATATTTGGGATTGCCATTGCAACTTTCCTA 1376 Query 1426 GGAATTGCATTTGGAGTTAAAGTTCTTAAGTTCATGTGAAGATGGTAGTATAACTAAACT 1485 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 1377 GGAATTGCATTTGGAGTTAAAGTTCTCAAGTTCATGTGAAGATGGTAATATAACTAAACT 1436 Query 1486 ATGG 1489 |||| Sbjct 1437 ATGG 1440 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64067792090 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5