BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52540.1
Length=1708
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949817 jgi|Araly1|949817|scaffold_801704.1 2213 0.0
> Ahg949817 jgi|Araly1|949817|scaffold_801704.1
Length=1440
Score = 2213 bits (1198), Expect = 0.0
Identities = 1365/1444 (95%), Gaps = 17/1444 (1%)
Strand=Plus/Plus
Query 59 TCGTGAAGCAGACGCGACAAATGGCGACGAGCTTGCCATTACTCAATGTGATCGGAAACT 118
||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||
Sbjct 1 TCGTGAAGCAGACGCGACAAATGGCGATGAGCTTGCCGTTACTCAATGTGACCGGAATCT 60
Query 119 CGTTACCGTCGTCGTCGAGACTATTTCGTCGGCGTTCGTACATTGTTTCACGCCAAGATC 178
||||| | ||||||||||||||||||| |||||| | |||||||||||||| ||||||
Sbjct 61 CGTTA-C--CGTCGTCGAGACTATTTCGCCGGCGTCCACACATTGTTTCACGCAAAGATC 117
Query 179 TACCTGAATTCTCAGCTAAATCAACCTCTTCAAGGCTTAGCTTCTCTCCTGCTTCGTTGT 238
| ||||||||||| |||||| || ||||||| |||||||||||||||||||||||||||
Sbjct 118 TTCCTGAATTCTCGGCTAAAGCAGTCTCTTCACGGCTTAGCTTCTCTCCTGCTTCGTTGT 177
Query 239 CGCAATTTCGTAACGGAACCGACAGG-TT-TCT-----G--TCG---CCGGAATCATCAT 286
|||||||||||||||||| ||||||| || ||| | ||| ||||||||||| |
Sbjct 178 CGCAATTTCGTAACGGAAGCGACAGGTTTCTCTCGCCGGATTCGTTACCGGAATCATCTT 237
Query 287 CTCCGATCCGATCGGTTACTGTGAGTTCGTTGAGTACGCCTCTCATTTCTCCCAACGATG 346
|||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 238 CTCCGATCCGATCGGTGACTGTGAGTTCGTTGAGTACACCTCTCATTTCACCCAACGATG 297
Query 347 AATGGGGAACTTGGACTGCTCTCTTCGCTACTGGTGCTCTCGGTCTCTGGTCGGAGAAGA 406
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 298 AATGGGGAACTTGGACTGCTCTCTTCGCCACTGGGGCTCTCGGTCTCTGGTCGGAGAATA 357
Query 407 CAAAGGTCGGAGCCGCTATGAGTGGTGCGTTAGTCAGCACTCTAGTTGGTCTTGCAGCTA 466
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 358 CAAAGGTCGGAGCCGCGATGAGTGGTGCGTTAGTCAGCACTCTAGTTGGGCTTGCAGCTA 417
Query 467 GTAATCTAGGGATCATTTCTTCTCAAGCTCCTGCTTTTGCTGTTGTGTTGAATTTTCTGC 526
||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 418 GTAATCTAGGGATTATTTCTTCCCAAGCTCCTGCTTTTGCTGTAGTGTTGAATTTCCTGC 477
Query 527 TTCCATTAGCTGTTCCTCTGTTGTTGTTTAGAGCTGATTTGCGTCGTGTGGTTCAGTCCA 586
| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 478 TCCCTTTAGCTGTTCCTCTGTTGTTGTTTAGAGCTGATTTGCGCCGTGTGGTTCAGTCCA 537
Query 587 CTGGAAAGCTTCTCTTGGCCTTTTTGATTGGATCAGTTGCCACAACGGTGGGTACAGCTC 646
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 538 CTGGAAAGCTTCTCTTGGCTTTTTTGATTGGATCAGTTGCCACAACGGTCGGTACAGCTC 597
Query 647 TGGCATACTATTTAGTGCCAATGAAGTCACTTGGCCCTGATAGTTGGAAGATTGCAGCTG 706
||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 598 TGGCATACTATCTAGTGCCAATGAAATCACTTGGGCCTGATAGTTGGAAGATTGCAGCTG 657
Query 707 CTCTCATGGGAAGACATATCGGTGGAGCCGTCAACTACGTAGCTATATCAAATGCTCTTG 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CTCTCATGGGAAGACATATCGGTGGAGCCGTCAACTACGTAGCTATATCAAATGCTCTTG 717
Query 767 GAGTTACACCATCGGTTTTAGCTGCTGGACTGGCTGCTGATAATGTTATATGCGCTGTAT 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GAGTTACACCATCGGTTTTAGCTGCTGGACTGGCTGCTGATAATGTTATATGCGCTGTAT 777
Query 827 ATTTCACGACATTGTTTGCTTTGGGCTCCAAAATACCTGCAGAAGCTGTACCGCCACCGA 886
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 ATTTCACTACATTGTTTGCTTTGGGCTCCAAAATACCTGCAGAAGCTGTACCGCCACCGA 837
Query 887 CTACT-ATTGTAGATGCAGAGACGAACGAAGCTTCTGAAACTAAAAATAAAATTCCTGTG 945
||||| || | | |||||||||||||| ||| ||||||||||||||| ||||||||||||
Sbjct 838 CTACTGAT-GCAAATGCAGAGACGAACCAAGTTTCTGAAACTAAAAACAAAATTCCTGTG 896
Query 946 CTACTGATAGCTACTGGAATTGCTGTGTCATTAGCTATCTGCAAGGCTGGGGCTTTGCTA 1005
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 897 CTACTGATAGCTACTGGAATTGCTGTGTCATTAGCTATATGCAAGGCTGGGGCTTTGCTA 956
Query 1006 ACAAAGTACTTCGGAATTTCGGGTGGTAGCTTACCGGCTATAACAGCGGTTGTTGTTATT 1065
||||||||||| || ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 957 ACAAAGTACTTTGGGATTTCGGGTGGTAGCTTACCGGCCATAACCGCGGTTGTTGTTATT 1016
Query 1066 TTAGCAACTGTCTTTCCGTCCCAGTTTGGTCGTCTTGCTCCATCTGGAGAAGCCATGGCT 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TTAGCAACTGTCTTTCCGTCCCAGTTTGGTCGTCTTGCTCCATCTGGAGAAGCCATGGCT 1076
Query 1126 CTAATTTTGATGCAGGTGTTCTTCACAGTGGTGGGTGCAAGCGGAAACATATGGAGTGTG 1185
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CTGATTCTGATGCAGGTGTTCTTCACAGTGGTGGGTGCAAGCGGAAACATATGGAGTGTG 1136
Query 1186 ATCAACACGGCGCCGAGCATATTCTTGTTTGCATTGGTTCAAATTGGGACACATCTGGCT 1245
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1137 ATCAACACGGCGCCGAGCATATTCTTGTTTGCGTTGGTTCAAATTGGGACACATCTAGCT 1196
Query 1246 GTGATATTGGGCATAGGAAAGCTGCTAAACATCGAGCTAAGGTTACTGCTTCTAGCATCA 1305
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1197 GTGATATTGGGTATAGGAAAGCTGCTAAACATCGAGCTAAGGTTGCTGCTTCTAGCATCA 1256
Query 1306 AATGCTAATGTCGGAGGACCCACGACCGCAGCTGGAATGGCGACGGCAAAGGGATGGAAC 1365
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1257 AATGCTAATGTCGGAGGACCCACGACTGCAGCTGGAATGGCGACAGCAAAGGGATGGAAC 1316
Query 1366 TCGTTGATAGTTCCCGGGATTCTGGCCGGAATATTTGGGATCGCCATTGCAACTTTCATA 1425
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| ||
Sbjct 1317 TCGTTGATAGTTCCAGGGATTCTGGCGGGAATATTTGGGATTGCCATTGCAACTTTCCTA 1376
Query 1426 GGAATTGCATTTGGAGTTAAAGTTCTTAAGTTCATGTGAAGATGGTAGTATAACTAAACT 1485
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1377 GGAATTGCATTTGGAGTTAAAGTTCTCAAGTTCATGTGAAGATGGTAATATAACTAAACT 1436
Query 1486 ATGG 1489
||||
Sbjct 1437 ATGG 1440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64067792090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5