BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G52545.1

Length=780
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg916887 jgi|Araly1|916887|Al_scaffold_0008_1638                    424    7e-118


> Ahg916887 jgi|Araly1|916887|Al_scaffold_0008_1638
Length=399

 Score =  424 bits (229),  Expect = 7e-118
 Identities = 343/393 (87%), Gaps = 28/393 (7%)
 Strand=Plus/Plus

Query  230  ATGGGAAGATCATATCAGAAGACTTCCTTTGGCACACACGCGGGCCAAAGAAAGGAGAAC  289
            |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct  1    ATGGGAAGATCATATCAGAAGACTTCCTATGGCATACACGCGGGCCAAAGAAAGGAGAAC  60

Query  290  CTCGGGGTTATGC-TT--T-C-A-TT--C----AATA-C-A--GCC-----T-TA-A---  323
            | || || ||||| ||  | | | ||  |    || | | |   ||     | || |   
Sbjct  61   CACGCGGCTATGCTTTCATCCAATTTAGCTGTAAAGAGCAATCTCCTGATTTCTACATCT  120

Query  324  AGAGTGAGCATACAGGAAGCTGAATTGGCGAAAGAGAAGATGCATGGGAGATTAGCTTGT  383
            | |||||| | ||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct  121  AAAGTGAGTACACAGGAAGCTGAATTGGCGAAGGAGAAAATGCATGGGAGATTAGCTTGT  180

Query  384  GGTAGGCCTTTAGTGGTGCGTCTAGCTAGTGAGAAGCATCTAGAAGAT-TCCTCTCATGA  442
            ||||| ||||| ||||||||| |||||||||||||||| ||||||||| | |||||||||
Sbjct  181  GGTAGACCTTTGGTGGTGCGTTTAGCTAGTGAGAAGCAACTAGAAGATAT-CTCTCATGA  239

Query  443  TCACTCCAAAAGATCATTACCAGAAGGAAACAGAACCAGATTTGTAAACGGGAGCAGCTC  502
            |||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct  240  TCACTCCAAAAGATCATTACCAGAAGCAAACAGAACGAGGTTTGTAAACGGGAGCAGCTC  299

Query  503  AGGACAAATGAGCCGAGACGAAAAAGTAACTGCCATTAAGAACAAACTCAAAGCTTTGGA  562
            |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct  300  AGGACAAATGAGCCGAGACGAAAAAGTAGCTGCTATTAAGAACAAACTCAAAGCTTTGGA  359

Query  563  AGAAGATGAGAAACGTGATCCCAAGAAACAGAA  595
            ||||||||||||||| |||||||||||||||||
Sbjct  360  AGAAGATGAGAAACGAGATCCCAAGAAACAGAA  392



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28782802335


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5