BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52552.1
Length=1739
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495325 jgi|Araly1|495325|fgenesh2_kg.8__1141__AT5G52552.1 1700 0.0
> Ahg495325 jgi|Araly1|495325|fgenesh2_kg.8__1141__AT5G52552.1
Length=1551
Score = 1700 bits (920), Expect = 0.0
Identities = 1182/1297 (91%), Gaps = 63/1297 (5%)
Strand=Plus/Plus
Query 405 AAGAAGAAGCCAG--TTAACAAAAGCAAGGCAAACAAAGACTTGTAGCAATCATGGATAG 462
|||||||||| || || |||||||| |||||||||||||||| |||||||||||||||
Sbjct 301 AAGAAGAAGCAAGTTTTTACAAAAGCCAGGCAAACAAAGACTTTTAGCAATCATGGATAA 360
Query 463 CAGTAGCTCGATGTGCAAACAAGCTCAGCCAATTGTTAGAAAAGCCAGGAAGAAAAAAGT 522
||||||||||| || | ||| | | ||||||||||||||||||||||| |||||
Sbjct 361 CAGTAGCTCGA--TG----C-AGC-C-G---ATTGTTAGAAAAGCCAGGAAGAAGAAAGT 408
Query 523 AAAAGGTGTAGTGGACCCAATTAAACAAGCTGAGAAGAAAAATAGACGTCTTGAGAAAGC 582
|||| || |||||||| ||| |||||||||||||||||||| ||| |||||||||||||
Sbjct 409 AAAACATGAAGTGGACCGAATCAAACAAGCTGAGAAGAAAAAGAGATGTCTTGAGAAAGC 468
Query 583 TATTGCTACTTCTGCAGCAATTCGGGCTGAGCTAGAGAAGAAGAAGCAAATGAAGAAGGA 642
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TATTGCTACTTCTGCAGCGATTCGGGCTGAGCTAGAGAAGAAGAAGCAAATGAAGAAGGA 528
Query 643 AGGACAGCTAGAGGCAGCAGATGAAGAAGATTCAGCAGATGCTGCAAAGAAGAAGCAGGA 702
|||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 529 AGGACAGCTAGACGCAGCAGTTGAAGAAGATTCAGCAGATGCTGCAAAGAATAAGCAGGA 588
Query 703 GAGAGACGAACTGGAGCGTATCAAACAAGC--AG-AG---AATAAAAAGAATCGGCTGGA 756
|||||||||||||||||||| ||||||||| || || |||||||| | |||||||||
Sbjct 589 GAGAGACGAACTGGAGCGTAGCAAACAAGCAGAGAAGAAAAATAAAAATATTCGGCTGGA 648
Query 757 GAAATCCATCGCTACTTCTGCAGCCATCATGGCTGAGCTAGAGAAGAAGAAGCTTAGAAA 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 GAAATCCATCGCTACTTCTGCAGCCATCATGGCTGAGCTAGAGAAGAAGAAGCTTAGAAA 708
Query 817 ACTTGAGGAACAAAAGAGATTGGCTGAGGAAGGTGCTGCCATTGCTGAGAAGAAAAAGAG 876
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 709 ACTTGAGGAACAAAAGAGATTGGATGAGGAAGGTGCCGCCATTGCTGAGAAGAAAAAGAG 768
Query 877 ACGTCTTGAGAAAGCTATTGCTACTACTGCAGCGATCCGCGCTGAGCTAGAGAAGAAGAA 936
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 769 ACGTCTTGAGAGAGCTATTGCTACTTCTGCAGCGATCCGCGCTGAGCTAGAGAAGAAGAA 828
Query 937 GCAAATGAAGAAGGAAGGACAGCTAGACGCAGCAGTTGAAGAAGATTCAGCATATGCTGC 996
||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 829 GCAAATGAAGAAGGAAGGACAGCTAGACGCAGCAGTTGAAGAAGATT---C--A----GC 879
Query 997 AAAGAAGAAGCAGGAGAGAGAGGAACTGGAGCGTATCAAACAAGCAGAGAGGAAAAAGAG 1056
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 880 AAAGAATAAGCAGGAGAGAGACGAACTGGAGCGTATCAAACAAGCAGAGAGGAAAAAGAG 939
Query 1057 ACGTATTGAGAAATCCATCGCTACTTCTGCAGCCATCAGGGCTGAGCTAGAGAAGAAGAA 1116
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 940 ACGTCTTGAGAAATCCATCGCTACTTCTGCTGCCATCAGGGCTGAGCTAGAGAAGAAGAA 999
Query 1117 GCTTAGAAAACTTGAGGAACAAAGGCGATTGGATGAGGAAGGTGCCGCCATAGCAGAGGC 1176
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1000 GCTTAGAAAACTTGAGGAACAAAGGAGATTGGATGAGGAAGGTGCCGCCATAGCAGAGGC 1059
Query 1177 TGTTGCTCTGCACGTCTTACTTGGCGAAGATTGTGATGACTCATACCGAAACACGCTAAA 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 TGTTGCTCTGCACGTCTTACTTGGCGAAGATTGTGATGACTCATACCGAAACACGCTAAA 1119
Query 1237 CCAAGAAACAGGTTTCAAGCCATGGGACT-ATACTACCAAAATCAATCTTTTTAGTGGTG 1295
||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||
Sbjct 1120 CCAAGAAACAGGTTTCAAGCCATGGGACTCA-ACTACCAAATTCAATCTTTTTAGTGGTG 1178
Query 1296 GAATAAACAGATTCTTTCCTCACCAACGGTGCTCAAGCTACGCGGTTCAT-GATAACAAC 1354
| | ||||| ||| |||||||||||||||||||| ||||| ||||||| | | ||| |||
Sbjct 1179 GTAGAAACATATTTTTTCCTCACCAACGGTGCTCGAGCTATGCGGTTCTTAG-TAATAAC 1237
Query 1355 AGAACAAGAGACAGTAACTGGTCGTCAGTCTCATATGAGCCTTTCGCAAGGGGATGGGAT 1414
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1238 AGAACAAGAGAGAGTAACTGGTCGTCAGTCTCATATGAGCCTTTCCCAAGGGGATGGGAT 1297
Query 1415 AA---CAACAACAACAACA---TGGGAATATCAGCTGATTTGTTTGATACTCAAGCTGTG 1468
|| |||||||||||||| || ||||||||||||||||| ||| | |||||||||||
Sbjct 1298 AATAACAACAACAACAACAACATGAGAATATCAGCTGATTTGATTGCTGCTCAAGCTGTG 1357
Query 1469 TCGTCACTACAGATCTCTGAGAATACTGACGTTGACGCAATTGTCTTCAATGGGATGTTC 1528
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1358 TCGTCACTACAGATCTCTGAGAATACTGACGTTGACGCCATTGTCTTCAATGGGATGTTC 1417
Query 1529 AGAAGATGACGACTGTATCATAATTCCCAAGCATTTGTAACTTATTAAAAGTTTGTGTGC 1588
|||||||||| | | ||||||||||||||||||||||| ||| |
Sbjct 1418 AGAAGATGAC-A----A-------------GCATTTGTAACTTATTAAAAGTT-GTG--C 1456
Query 1589 TGTTTTTTATTTTACACAACCAAAACAACTTTTTCGTCTCTTACACTGTGCAAATCCTT- 1647
||||||| |||||||| | |||||| ||| |||||||||||||||||||| |||| |||
Sbjct 1457 TGTTTTT-ATTTTACATA-CCAAAAAAACATTTTCGTCTCTTACACTGTGAAAATACTTT 1514
Query 1648 CATCTCTCTTTAGCTTTTTAGTGAAGTGAGACTCATA 1684
||||||||||| | |||||||||||||||||||||||
Sbjct 1515 CATCTCTCTTTGGGTTTTTAGTGAAGTGAGACTCATA 1551
Score = 455 bits (246), Expect = 5e-127
Identities = 297/321 (93%), Gaps = 6/321 (2%)
Strand=Plus/Plus
Query 860 GCTGAGAAGAAAAAGAGACGTCTTGAGAAAGCTATTGCTACTACTGCAGCGATCCGCGCT 919
|||||||||||||||||| ||||||||||||||||||||||| |||||||||| || |||
Sbjct 437 GCTGAGAAGAAAAAGAGATGTCTTGAGAAAGCTATTGCTACTTCTGCAGCGATTCGGGCT 496
Query 920 GAGCTAGAGAAGAAGAAGCAAATGAAGAAGGAAGGACAGCTAGACGCAGCAGTTGAAGAA 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 GAGCTAGAGAAGAAGAAGCAAATGAAGAAGGAAGGACAGCTAGACGCAGCAGTTGAAGAA 556
Query 980 GATTCAGCATATGCTGCAAAGAAGAAGCAGGAGAGAGAGGAACTGGAGCGTATCAAACAA 1039
||||||||| ||||||||||||| |||||||||||||| ||||||||||||| |||||||
Sbjct 557 GATTCAGCAGATGCTGCAAAGAATAAGCAGGAGAGAGACGAACTGGAGCGTAGCAAACAA 616
Query 1040 GCAGAGAGGAAAAAGAGACGTATT-G-----AGAAATCCATCGCTACTTCTGCAGCCATC 1093
||||||| |||||| | | |||| | |||||||||||||||||||||||||||||
Sbjct 617 GCAGAGAAGAAAAATAAAAATATTCGGCTGGAGAAATCCATCGCTACTTCTGCAGCCATC 676
Query 1094 AGGGCTGAGCTAGAGAAGAAGAAGCTTAGAAAACTTGAGGAACAAAGGCGATTGGATGAG 1153
| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 677 ATGGCTGAGCTAGAGAAGAAGAAGCTTAGAAAACTTGAGGAACAAAAGAGATTGGATGAG 736
Query 1154 GAAGGTGCCGCCATAGCAGAG 1174
|||||||||||||| || |||
Sbjct 737 GAAGGTGCCGCCATTGCTGAG 757
Score = 407 bits (220), Expect = 2e-112
Identities = 286/316 (91%), Gaps = 11/316 (3%)
Strand=Plus/Plus
Query 551 GCTGAGAAGAAAAATAGACGTCTTGAGAAAGCTATTGCTACTTCTGCAGCAATTCGGGCT 610
|||||||||||||| ||||||||||||| ||||||||||||||||||||| || || |||
Sbjct 752 GCTGAGAAGAAAAAGAGACGTCTTGAGAGAGCTATTGCTACTTCTGCAGCGATCCGCGCT 811
Query 611 GAGCTAGAGAAGAAGAAGCAAATGAAGAAGGAAGGACAGCTAGAGGCAGCAGATGAAGAA 670
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 812 GAGCTAGAGAAGAAGAAGCAAATGAAGAAGGAAGGACAGCTAGACGCAGCAGTTGAAGAA 871
Query 671 GATTCAGCAGATGCTGCAAAGAAGAAGCAGGAGAGAGACGAACTGGAGCGTATCAAACAA 730
|||| | | |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 872 GATT---C--A----GCAAAGAATAAGCAGGAGAGAGACGAACTGGAGCGTATCAAACAA 922
Query 731 GCAGAGAATAAAAAGA-ATCGGCTGGAGAAATCCATCGCTACTTCTGCAGCCATCATGGC 789
||||||| ||||||| | || || ||||||||||||||||||||||| ||||||| |||
Sbjct 923 GCAGAGAGGAAAAAGAGA-CGTCTTGAGAAATCCATCGCTACTTCTGCTGCCATCAGGGC 981
Query 790 TGAGCTAGAGAAGAAGAAGCTTAGAAAACTTGAGGAACAAAAGAGATTGGCTGAGGAAGG 849
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 982 TGAGCTAGAGAAGAAGAAGCTTAGAAAACTTGAGGAACAAAGGAGATTGGATGAGGAAGG 1041
Query 850 TGCTGCCATTGCTGAG 865
||| ||||| || |||
Sbjct 1042 TGCCGCCATAGCAGAG 1057
Score = 346 bits (187), Expect = 3e-94
Identities = 208/218 (95%), Gaps = 1/218 (0%)
Strand=Plus/Plus
Query 136 GTCGAGGTAGTCTGCTTCTATGCCATTTTGCCGAGAAAATGGGAGAAGTTAAGGGATGTT 195
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 GTCGA-ATAGTCTGCTTCTATGCCATTTTGCCGAGAAAATGGGAGAAGTTAAGGGATGTT 142
Query 196 GGAAATTAGGACGAATGCTTTCAAAGGATAACTCTGCAAACTCCTACAACGTCTCCCTTC 255
|||||||| ||| ||||||| ||| |||||| ||||||||||||||||||||||||||||
Sbjct 143 GGAAATTAAGACCAATGCTTCCAAGGGATAAGTCTGCAAACTCCTACAACGTCTCCCTTC 202
Query 256 TCTTATCTCCTGTTGTTTCTGTTTGGGATTGTATTGTCCGTAAAATGAGGTATACCTACA 315
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 203 TGTTATCTCCTGTTGTTTCTGTTTGGGATTGTATCGTCCGTAAAATGAGGTATACCTACA 262
Query 316 TACCTGAGTGGGTGTAGTAGTCATTGAGATCATCGCGC 353
||||||||||||||||||||||| ||||||||||||||
Sbjct 263 TACCTGAGTGGGTGTAGTAGTCAATGAGATCATCGCGC 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65248589685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5