BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G52552.1 Length=1739 Score E Sequences producing significant alignments: (Bits) Value Ahg495325 jgi|Araly1|495325|fgenesh2_kg.8__1141__AT5G52552.1 1700 0.0 > Ahg495325 jgi|Araly1|495325|fgenesh2_kg.8__1141__AT5G52552.1 Length=1551 Score = 1700 bits (920), Expect = 0.0 Identities = 1182/1297 (91%), Gaps = 63/1297 (5%) Strand=Plus/Plus Query 405 AAGAAGAAGCCAG--TTAACAAAAGCAAGGCAAACAAAGACTTGTAGCAATCATGGATAG 462 |||||||||| || || |||||||| |||||||||||||||| ||||||||||||||| Sbjct 301 AAGAAGAAGCAAGTTTTTACAAAAGCCAGGCAAACAAAGACTTTTAGCAATCATGGATAA 360 Query 463 CAGTAGCTCGATGTGCAAACAAGCTCAGCCAATTGTTAGAAAAGCCAGGAAGAAAAAAGT 522 ||||||||||| || | ||| | | ||||||||||||||||||||||| ||||| Sbjct 361 CAGTAGCTCGA--TG----C-AGC-C-G---ATTGTTAGAAAAGCCAGGAAGAAGAAAGT 408 Query 523 AAAAGGTGTAGTGGACCCAATTAAACAAGCTGAGAAGAAAAATAGACGTCTTGAGAAAGC 582 |||| || |||||||| ||| |||||||||||||||||||| ||| ||||||||||||| Sbjct 409 AAAACATGAAGTGGACCGAATCAAACAAGCTGAGAAGAAAAAGAGATGTCTTGAGAAAGC 468 Query 583 TATTGCTACTTCTGCAGCAATTCGGGCTGAGCTAGAGAAGAAGAAGCAAATGAAGAAGGA 642 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 469 TATTGCTACTTCTGCAGCGATTCGGGCTGAGCTAGAGAAGAAGAAGCAAATGAAGAAGGA 528 Query 643 AGGACAGCTAGAGGCAGCAGATGAAGAAGATTCAGCAGATGCTGCAAAGAAGAAGCAGGA 702 |||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct 529 AGGACAGCTAGACGCAGCAGTTGAAGAAGATTCAGCAGATGCTGCAAAGAATAAGCAGGA 588 Query 703 GAGAGACGAACTGGAGCGTATCAAACAAGC--AG-AG---AATAAAAAGAATCGGCTGGA 756 |||||||||||||||||||| ||||||||| || || |||||||| | ||||||||| Sbjct 589 GAGAGACGAACTGGAGCGTAGCAAACAAGCAGAGAAGAAAAATAAAAATATTCGGCTGGA 648 Query 757 GAAATCCATCGCTACTTCTGCAGCCATCATGGCTGAGCTAGAGAAGAAGAAGCTTAGAAA 816 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 649 GAAATCCATCGCTACTTCTGCAGCCATCATGGCTGAGCTAGAGAAGAAGAAGCTTAGAAA 708 Query 817 ACTTGAGGAACAAAAGAGATTGGCTGAGGAAGGTGCTGCCATTGCTGAGAAGAAAAAGAG 876 ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 709 ACTTGAGGAACAAAAGAGATTGGATGAGGAAGGTGCCGCCATTGCTGAGAAGAAAAAGAG 768 Query 877 ACGTCTTGAGAAAGCTATTGCTACTACTGCAGCGATCCGCGCTGAGCTAGAGAAGAAGAA 936 ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 769 ACGTCTTGAGAGAGCTATTGCTACTTCTGCAGCGATCCGCGCTGAGCTAGAGAAGAAGAA 828 Query 937 GCAAATGAAGAAGGAAGGACAGCTAGACGCAGCAGTTGAAGAAGATTCAGCATATGCTGC 996 ||||||||||||||||||||||||||||||||||||||||||||||| | | || Sbjct 829 GCAAATGAAGAAGGAAGGACAGCTAGACGCAGCAGTTGAAGAAGATT---C--A----GC 879 Query 997 AAAGAAGAAGCAGGAGAGAGAGGAACTGGAGCGTATCAAACAAGCAGAGAGGAAAAAGAG 1056 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 880 AAAGAATAAGCAGGAGAGAGACGAACTGGAGCGTATCAAACAAGCAGAGAGGAAAAAGAG 939 Query 1057 ACGTATTGAGAAATCCATCGCTACTTCTGCAGCCATCAGGGCTGAGCTAGAGAAGAAGAA 1116 |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 940 ACGTCTTGAGAAATCCATCGCTACTTCTGCTGCCATCAGGGCTGAGCTAGAGAAGAAGAA 999 Query 1117 GCTTAGAAAACTTGAGGAACAAAGGCGATTGGATGAGGAAGGTGCCGCCATAGCAGAGGC 1176 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1000 GCTTAGAAAACTTGAGGAACAAAGGAGATTGGATGAGGAAGGTGCCGCCATAGCAGAGGC 1059 Query 1177 TGTTGCTCTGCACGTCTTACTTGGCGAAGATTGTGATGACTCATACCGAAACACGCTAAA 1236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1060 TGTTGCTCTGCACGTCTTACTTGGCGAAGATTGTGATGACTCATACCGAAACACGCTAAA 1119 Query 1237 CCAAGAAACAGGTTTCAAGCCATGGGACT-ATACTACCAAAATCAATCTTTTTAGTGGTG 1295 ||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| Sbjct 1120 CCAAGAAACAGGTTTCAAGCCATGGGACTCA-ACTACCAAATTCAATCTTTTTAGTGGTG 1178 Query 1296 GAATAAACAGATTCTTTCCTCACCAACGGTGCTCAAGCTACGCGGTTCAT-GATAACAAC 1354 | | ||||| ||| |||||||||||||||||||| ||||| ||||||| | | ||| ||| Sbjct 1179 GTAGAAACATATTTTTTCCTCACCAACGGTGCTCGAGCTATGCGGTTCTTAG-TAATAAC 1237 Query 1355 AGAACAAGAGACAGTAACTGGTCGTCAGTCTCATATGAGCCTTTCGCAAGGGGATGGGAT 1414 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1238 AGAACAAGAGAGAGTAACTGGTCGTCAGTCTCATATGAGCCTTTCCCAAGGGGATGGGAT 1297 Query 1415 AA---CAACAACAACAACA---TGGGAATATCAGCTGATTTGTTTGATACTCAAGCTGTG 1468 || |||||||||||||| || ||||||||||||||||| ||| | ||||||||||| Sbjct 1298 AATAACAACAACAACAACAACATGAGAATATCAGCTGATTTGATTGCTGCTCAAGCTGTG 1357 Query 1469 TCGTCACTACAGATCTCTGAGAATACTGACGTTGACGCAATTGTCTTCAATGGGATGTTC 1528 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1358 TCGTCACTACAGATCTCTGAGAATACTGACGTTGACGCCATTGTCTTCAATGGGATGTTC 1417 Query 1529 AGAAGATGACGACTGTATCATAATTCCCAAGCATTTGTAACTTATTAAAAGTTTGTGTGC 1588 |||||||||| | | ||||||||||||||||||||||| ||| | Sbjct 1418 AGAAGATGAC-A----A-------------GCATTTGTAACTTATTAAAAGTT-GTG--C 1456 Query 1589 TGTTTTTTATTTTACACAACCAAAACAACTTTTTCGTCTCTTACACTGTGCAAATCCTT- 1647 ||||||| |||||||| | |||||| ||| |||||||||||||||||||| |||| ||| Sbjct 1457 TGTTTTT-ATTTTACATA-CCAAAAAAACATTTTCGTCTCTTACACTGTGAAAATACTTT 1514 Query 1648 CATCTCTCTTTAGCTTTTTAGTGAAGTGAGACTCATA 1684 ||||||||||| | ||||||||||||||||||||||| Sbjct 1515 CATCTCTCTTTGGGTTTTTAGTGAAGTGAGACTCATA 1551 Score = 455 bits (246), Expect = 5e-127 Identities = 297/321 (93%), Gaps = 6/321 (2%) Strand=Plus/Plus Query 860 GCTGAGAAGAAAAAGAGACGTCTTGAGAAAGCTATTGCTACTACTGCAGCGATCCGCGCT 919 |||||||||||||||||| ||||||||||||||||||||||| |||||||||| || ||| Sbjct 437 GCTGAGAAGAAAAAGAGATGTCTTGAGAAAGCTATTGCTACTTCTGCAGCGATTCGGGCT 496 Query 920 GAGCTAGAGAAGAAGAAGCAAATGAAGAAGGAAGGACAGCTAGACGCAGCAGTTGAAGAA 979 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 497 GAGCTAGAGAAGAAGAAGCAAATGAAGAAGGAAGGACAGCTAGACGCAGCAGTTGAAGAA 556 Query 980 GATTCAGCATATGCTGCAAAGAAGAAGCAGGAGAGAGAGGAACTGGAGCGTATCAAACAA 1039 ||||||||| ||||||||||||| |||||||||||||| ||||||||||||| ||||||| Sbjct 557 GATTCAGCAGATGCTGCAAAGAATAAGCAGGAGAGAGACGAACTGGAGCGTAGCAAACAA 616 Query 1040 GCAGAGAGGAAAAAGAGACGTATT-G-----AGAAATCCATCGCTACTTCTGCAGCCATC 1093 ||||||| |||||| | | |||| | ||||||||||||||||||||||||||||| Sbjct 617 GCAGAGAAGAAAAATAAAAATATTCGGCTGGAGAAATCCATCGCTACTTCTGCAGCCATC 676 Query 1094 AGGGCTGAGCTAGAGAAGAAGAAGCTTAGAAAACTTGAGGAACAAAGGCGATTGGATGAG 1153 | |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 677 ATGGCTGAGCTAGAGAAGAAGAAGCTTAGAAAACTTGAGGAACAAAAGAGATTGGATGAG 736 Query 1154 GAAGGTGCCGCCATAGCAGAG 1174 |||||||||||||| || ||| Sbjct 737 GAAGGTGCCGCCATTGCTGAG 757 Score = 407 bits (220), Expect = 2e-112 Identities = 286/316 (91%), Gaps = 11/316 (3%) Strand=Plus/Plus Query 551 GCTGAGAAGAAAAATAGACGTCTTGAGAAAGCTATTGCTACTTCTGCAGCAATTCGGGCT 610 |||||||||||||| ||||||||||||| ||||||||||||||||||||| || || ||| Sbjct 752 GCTGAGAAGAAAAAGAGACGTCTTGAGAGAGCTATTGCTACTTCTGCAGCGATCCGCGCT 811 Query 611 GAGCTAGAGAAGAAGAAGCAAATGAAGAAGGAAGGACAGCTAGAGGCAGCAGATGAAGAA 670 |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 812 GAGCTAGAGAAGAAGAAGCAAATGAAGAAGGAAGGACAGCTAGACGCAGCAGTTGAAGAA 871 Query 671 GATTCAGCAGATGCTGCAAAGAAGAAGCAGGAGAGAGACGAACTGGAGCGTATCAAACAA 730 |||| | | |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 872 GATT---C--A----GCAAAGAATAAGCAGGAGAGAGACGAACTGGAGCGTATCAAACAA 922 Query 731 GCAGAGAATAAAAAGA-ATCGGCTGGAGAAATCCATCGCTACTTCTGCAGCCATCATGGC 789 ||||||| ||||||| | || || ||||||||||||||||||||||| ||||||| ||| Sbjct 923 GCAGAGAGGAAAAAGAGA-CGTCTTGAGAAATCCATCGCTACTTCTGCTGCCATCAGGGC 981 Query 790 TGAGCTAGAGAAGAAGAAGCTTAGAAAACTTGAGGAACAAAAGAGATTGGCTGAGGAAGG 849 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 982 TGAGCTAGAGAAGAAGAAGCTTAGAAAACTTGAGGAACAAAGGAGATTGGATGAGGAAGG 1041 Query 850 TGCTGCCATTGCTGAG 865 ||| ||||| || ||| Sbjct 1042 TGCCGCCATAGCAGAG 1057 Score = 346 bits (187), Expect = 3e-94 Identities = 208/218 (95%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 136 GTCGAGGTAGTCTGCTTCTATGCCATTTTGCCGAGAAAATGGGAGAAGTTAAGGGATGTT 195 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 84 GTCGA-ATAGTCTGCTTCTATGCCATTTTGCCGAGAAAATGGGAGAAGTTAAGGGATGTT 142 Query 196 GGAAATTAGGACGAATGCTTTCAAAGGATAACTCTGCAAACTCCTACAACGTCTCCCTTC 255 |||||||| ||| ||||||| ||| |||||| |||||||||||||||||||||||||||| Sbjct 143 GGAAATTAAGACCAATGCTTCCAAGGGATAAGTCTGCAAACTCCTACAACGTCTCCCTTC 202 Query 256 TCTTATCTCCTGTTGTTTCTGTTTGGGATTGTATTGTCCGTAAAATGAGGTATACCTACA 315 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 203 TGTTATCTCCTGTTGTTTCTGTTTGGGATTGTATCGTCCGTAAAATGAGGTATACCTACA 262 Query 316 TACCTGAGTGGGTGTAGTAGTCATTGAGATCATCGCGC 353 ||||||||||||||||||||||| |||||||||||||| Sbjct 263 TACCTGAGTGGGTGTAGTAGTCAATGAGATCATCGCGC 300 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65248589685 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5