BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52560.1
Length=2375
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495327 jgi|Araly1|495327|fgenesh2_kg.8__1143__AT5G52560.1 3290 0.0
Ahg931232 jgi|Araly1|931232|scaffold_303689.1 193 6e-48
Ahg937125 jgi|Araly1|937125|scaffold_501316.1 187 3e-46
Ahg932941 jgi|Araly1|932941|scaffold_400929.1 187 3e-46
Ahg344273 jgi|Araly1|344273|fgenesh1_pg.C_scaffold_4000615 187 3e-46
Ahg907761 jgi|Araly1|907761|Al_scaffold_0002_842 182 1e-44
Ahg894642 jgi|Araly1|894642|Al_scaffold_0006_2638 104 3e-21
> Ahg495327 jgi|Araly1|495327|fgenesh2_kg.8__1143__AT5G52560.1
Length=2206
Score = 3290 bits (1781), Expect = 0.0
Identities = 2046/2170 (94%), Gaps = 34/2170 (2%)
Strand=Plus/Plus
Query 117 AACAAAACACATAATTTTGGTTCGG---TCTTCTTCAATTTTCACCGACACAAACCCGTC 173
|||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||
Sbjct 65 AACAAAACACATAA-TTTGGTTCGGTCTTCTTCTTCAATTTTCACCGACAGAAACCCGTC 123
Query 174 TTTTCCTC-T-TCTCTCTCATTTCTATCAATTTTTCTCTACAATTCCCCAGTCGTCGAAG 231
|||||||| | ||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 124 TTTTCCTCTTCTCTCTCTCATTTCTATCAA-TTTTCTCGACAATTCCCCAGTCGTCGAAG 182
Query 232 AAGCTACAGCTTGCAATTTGCTCGTGTTCTCTTCCATCATTCCTTTGTTAAGAGCCTCTT 291
|||||||||||||||||||||||||||||||||||||| |||| || ||||| ||
Sbjct 183 AAGCTACAGCTTGCAATTTGCTCGTGTTCTCTTCCATCGTTCC-----AAAAAGCCTTTT 237
Query 292 CATGGCTTCTACGGTTGATTCCAATTTCTTCTCATCCGTCCCAGCTCTTCACAGTAACCT 351
||||||||| ||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 238 CATGGCTTCCACGGTTGATTCCAATATCTTCTCATCCGTCCCAGCTCTTCAGAGAAACCT 297
Query 352 CGGACTTTTGTCTCCTGATCAGATCGAACTGGCGAAGATCTTATTAGAAAATGGTCAGAG 411
|||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 298 CGGAATTTTGTCTCCTGATCAGATCGAATTGGCGAAGATCTTATTGGAAAATGGTCAGAG 357
Query 412 TCATCTCTTCCAACAATGGCCTGAACTCGGTGTTGATGATAAAGAGAAGCTAGCTTTTTT 471
|||||||||||| ||||||||| |||| || |||||||| ||| |||| |||| ||||||
Sbjct 358 TCATCTCTTCCAGCAATGGCCTCAACTTGGCGTTGATGACAAACAGAAACTAGATTTTTT 417
Query 472 CGATCAGATTGCTCGCTTAAATTCAAGCTATCCTGGAGGTTTAGCAGCATACATTAAGAC 531
||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 418 CGATCAGATTGCTCGCTTAAATTCAAGTTATCCTGGGGGTTTAGCGGCATACATTAAGAC 477
Query 532 TGCGAAAGAGCTTCTCGCTGATTCGAAAGTAGGGAAAAACCCATATGATGGTTTCTCTCC 591
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 478 TGCGAAAGAGCTTCTCGCTGATTCGAAATTAGGGAAGAACCCATATGATGGTTTCTCTCC 537
Query 592 TTCTGTCCCTTCAGGAGAAAATCTCACTTTTGGTACTGACAACTTCATCGAAATGGAAAA 651
|||||| ||||||||||||||||| |||||||||| ||| ||||||||||||||||||||
Sbjct 538 TTCTGTTCCTTCAGGAGAAAATCTTACTTTTGGTAATGAGAACTTCATCGAAATGGAAAA 597
Query 652 AAGAGGTGTCGTCGAAGCTAGGAATGCTGCTTTTGTTCTGGTTGCTGGTGGTCTTGGCGA 711
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 598 AAGAGGTGTCGTCGAAGCTAGGAATGCCGCTTTTGTTCTTGTTGCTGGTGGTCTTGGCGA 657
Query 712 GCGTCTTGGTTACAATGGAATCAAGGTGGCACTTCCAAGGGAGACAACTACAGGGACATG 771
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||
Sbjct 658 GCGTCTTGGTTACAATGGAATCAAGGTGGCACTTCCAAGAGAGACAACTACTGGGATATG 717
Query 772 CTTCTTGCAGCATTACATTGAATCTATATTGGCTCTTCAAGAAGCTAGCAACAAGATCGA 831
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CTTCTTGCAGCACTACATTGAATCTATATTGGCTCTTCAAGAAGCTAGCAACAAGATCGC 777
Query 832 TTCTGATGGAAGTGAGAGAGACATTCCTTTCATTATTATGACATCTGATGATACTCATTC 891
|||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 778 TTCTGATGAAAGTCAGAGAGACATTCCTTTCATTATTATGACATCTGATGATACACATTC 837
Query 892 ACGTACACTGGACCTGTTAGAGTTAAACTCTTATTTTGGAATGAAACCTACTCAAGTACA 951
|||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 838 ACGTACACTGGAGCTATTAGAGTTAAACTCTTATTTTGGGATGAAACCTACTCAAGTACA 897
Query 952 TCTTCTAAAACAGGAAAAAGTTGCATGTCTTGATGATAACGATGCCAGACTTGCATTAGA 1011
|||| |||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 898 TCTTTTAAAACAGGAAAAAGTTGCATGTCTTGATGATAATGACGCCAGGCTTGCATTAGA 957
Query 1012 CCCTCACAACAAATACAGTATCCAGACAAAACCTCATGGACATGGTGATGTACATTCGCT 1071
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 958 CCCCCACAACAAATACAGTATCCAGACAAAACCTCATGGACATGGCGATGTACATTCACT 1017
Query 1072 TCTTTATTCCAGTGGCCTTCTTCATAAATGGCTTGAG-GCTGGTTTAAAATGGGTTTTGT 1130
||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1018 TCTATATTCCAGTGGCCTTCTTCATAAATGGCTTG-GTGCTGGTTTAAAATGGGTTTTGT 1076
Query 1131 TTTTCCAAGATACAAATGGACTTCTCTTCAATGCAATTCCAGCTTCTTTGGGTGTGAGTG 1190
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TTTTCCAAGATACAAATGGTCTTCTCTTCAATGCAATTCCAGCTTCTTTGGGTGTGAGTG 1136
Query 1191 CTACCAAACAGTATCATGTTAACTCTCTCGCTGTTCCTCGCAAGGCGAAGGAAGCTATTG 1250
|||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 1137 CTACCAAACAGTATCATGTTAACTCTCTTGCTGTTCCCCGTAAGGCGAAGGAAGCTATTG 1196
Query 1251 GAGGAATTAGTAAACTTACTCACGTTGATGGGAGATCTATGGTAATCAATGTGGAGTACA 1310
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1197 GAGGAATTACTAAACTTACTCACGTTGATGGCAGATCTATGGTAATCAATGTGGAGTACA 1256
Query 1311 ATCAACTTGATCCTCTACTTAGAGCATCTGGATTCCCTGATGGGGATGTTAATTGTGAGA 1370
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1257 ATCAACTTGATCCTCTACTTAGAGCATCTGGATTCCCTGATGGAGATGTTAATTGTGAGA 1316
Query 1371 CGGGCTTCTCCCCATTCCCGGGAAATATTAATCAATTGATTCTGGAACTTGGTCCCTACA 1430
| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 CAGGCTTTTCGCCATTCCCGGGAAATATTAATCAATTGATTCTGGAACTTGGTCCCTACA 1376
Query 1431 AAGACGAGTTGCAAAAAACTGGAGGGGCCATTAAAGAGTTTGTTAATCCAAAATACAAGG 1490
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1377 AAGACGAGTTGCAAAAAACTGGAGGGGCCATCAAAGAGTTTGTTAATCCAAAATACAAGG 1436
Query 1491 ATAGCACCAAAACAGCATTTAAATCTTCGACTCGTCTAGAGTGTATGATGCAAGATTATC 1550
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1437 ATAGCACCAAAACAGCGTTTAAATCTTCAACTCGTCTAGAGTGTATGATGCAAGATTATC 1496
Query 1551 CAAAGACATTGCCTCCTACGGCACGAGTTGGATTCACGGTGATGGATATATGGCTTGCTT 1610
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 CAAAGACATTGCCTCCAACTGCACGAGTTGGATTCACGGTGATGGATATATGGCTTGCTT 1556
Query 1611 ATGCACCCGTAAAGAATAACCCTGAAGATGCTGCTAAGGTACCAAAGGGAAACCCATATC 1670
|||||||||| |||||||| ||||| ||||||||||||||||| |||||||| |||||||
Sbjct 1557 ATGCACCCGTCAAGAATAATCCTGAGGATGCTGCTAAGGTACCTAAGGGAAATCCATATC 1616
Query 1671 ATAGTGCTACTTCTGGAGAAATGGCGATTTATCGTGCTAACAGCCTCATTCTTCAAAAGG 1730
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 ACAGTGCAACTTCTGGAGAAATGGCGATTTATCGTGCTAACAGCCTCATTCTTCAAAAGG 1676
Query 1731 CTGGTGTCAAAGTGGAAGAGCCTGTGAAGCAAGTCTTGAATGGCCAAGAGGTTGAAGTAT 1790
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1677 CTGGTGTCAAAGTGGAAGAGCCTGTAAAGCAGGTCTTGAATGGCCAAGAGGTTGAAGTAT 1736
Query 1791 GGTCTCGTATCACATGGAAACCCAAATGGGGAATGATCTTCTCTGATATCAAAAAGAAAG 1850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 GGTCTCGTATCACATGGAAACCCAAATGGGGAATGATCTTCTCTGATATCAAAAAGAAAG 1796
Query 1851 TCAGCGGGAACTGCGAGGTCTCTCAGAGATCCACAATGGCAATCAAGGGTCGTAATGTAT 1910
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1797 TCAGCGGGAACTGCGAGGTCTCTCAGAGATCCACAATGGCAATCAAGGGTCGTAATGTTT 1856
Query 1911 TTATCAAAGATCTCTCCTTGGACGGTGCTCTTATTGTAGATTCCATTGATGATGCAGAGG 1970
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1857 TTATTGAAGATCTCTCCTTGGACGGTGCTCTTATTGTAGATTCCATTGATGAAGCAGAGG 1916
Query 1971 TAAAACTTGGAGGTTTGATAAAGAACAATGGTTGGACCATGGAGAGTGTAGATTACAAGG 2030
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 TTAAACTTGGAGGTTTGATAAAGAACAATGGTTGGACCATGGAGAGTGTAGATTACAAGG 1976
Query 2031 ACACATCGGTTCCAGAAGAAATAAGAATCAGAGGTTTTAGATTCAACAAAGTGGAGCAAC 2090
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1977 ACACATCGGTTCCAGAAGAAATAAGAATCAGAGGTTTCAGATTCAACAAAGTGGAGCAAC 2036
Query 2091 TCGAAAAGAAGTTAACTCAACCTGGCAAATTTTCTGTTGAAGATTGAAGTTATCTTTGCA 2150
|||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 2037 TCGAAAAGAATTTCACTCAACCTGGAAAATTTTCTGTGGAAGATTGAAGTTATCTTTG-- 2094
Query 2151 CATTTATGTGACACTTTTTTAAAAAGTGTTATTTGGCAATATGATCAATTAGCAAATTAG 2210
| | ||||||| |||| |||||||||||||||||||| |||||||||||||
Sbjct 2095 --T----G--ACACTTTGG-AAAA-GTGTTATTTGGCAATATGATTAATTAGCAAATTAT 2144
Query 2211 CTAtttttttAAGAGAATGCCAAATGATCCATTAATTTGTCCTTCTAATGGAGAGCTTAA 2270
|||||||||||| | |||||||||||||||| | ||||||||||||||| ||||||
Sbjct 2145 CTATTTTTTTAA-A---TGCCAAATGATCCATT--T--GTCCTTCTAATGGAGGGCTTAA 2196
Query 2271 TTCTTTCTTT 2280
||||||||||
Sbjct 2197 TTCTTTCTTT 2206
> Ahg931232 jgi|Araly1|931232|scaffold_303689.1
Length=637
Score = 193 bits (104), Expect = 6e-48
Identities = 112/116 (97%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 1775 CAAGAGGTTGAAGTATGGTCTCGTATCACATGGAAACCCAAATGGGGAATGATCTTCTCT 1834
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 444 CAAGAGGTTGAAGTATTGTCTCATATCACATGGAAACCCAAATGGGGAATGATCTTCTCT 503
Query 1835 GATATCAAAAAGAAAGTCAGCGGGAACTGCGAGGTCTCTCAGAGATCCACAATGGC 1890
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 504 GATATCAAAAAGAAAGTCAGCAGGAACTGCGAGGTCTCTCAGAGATCCACGATGGC 559
> Ahg937125 jgi|Araly1|937125|scaffold_501316.1
Length=915
Score = 187 bits (101), Expect = 3e-46
Identities = 111/116 (96%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 1775 CAAGAGGTTGAAGTATGGTCTCGTATCACATGGAAACCCAAATGGGGAATGATCTTCTCT 1834
|||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 484 CAAGAGGTTGAAGTATTGTCTCATATCACATGGAAACCCAAGTGGGGAATGATCTTCTCT 543
Query 1835 GATATCAAAAAGAAAGTCAGCGGGAACTGCGAGGTCTCTCAGAGATCCACAATGGC 1890
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 544 GATATCAAAAAGAAAGTCAGCAGGAACTGCGAGGTCTCTCAGAGATCCACGATGGC 599
> Ahg932941 jgi|Araly1|932941|scaffold_400929.1
Length=914
Score = 187 bits (101), Expect = 3e-46
Identities = 111/116 (96%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 1775 CAAGAGGTTGAAGTATGGTCTCGTATCACATGGAAACCCAAATGGGGAATGATCTTCTCT 1834
|||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 483 CAAGAGGTTGAAGTATTGTCTCATATCACATGGAAACCCAAGTGGGGAATGATCTTCTCT 542
Query 1835 GATATCAAAAAGAAAGTCAGCGGGAACTGCGAGGTCTCTCAGAGATCCACAATGGC 1890
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 543 GATATCAAAAAGAAAGTCAGCAGGAACTGCGAGGTCTCTCAGAGATCCACGATGGC 598
> Ahg344273 jgi|Araly1|344273|fgenesh1_pg.C_scaffold_4000615
Length=507
Score = 187 bits (101), Expect = 3e-46
Identities = 111/116 (96%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 1775 CAAGAGGTTGAAGTATGGTCTCGTATCACATGGAAACCCAAATGGGGAATGATCTTCTCT 1834
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 334 CAAGAGGTTGAAGTATTGTCTCATATCACATGGAAACCCAAATGGGGAATGATCTTCTCT 393
Query 1835 GATATCAAAAAGAAAGTCAGCGGGAACTGCGAGGTCTCTCAGAGATCCACAATGGC 1890
||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||
Sbjct 394 GATATCAAAAAGAAAGTCAGCAGGAACTGCGAGGTCTCTCAGGGATCCACGATGGC 449
> Ahg907761 jgi|Araly1|907761|Al_scaffold_0002_842
Length=465
Score = 182 bits (98), Expect = 1e-44
Identities = 110/116 (95%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 1775 CAAGAGGTTGAAGTATGGTCTCGTATCACATGGAAACCCAAATGGGGAATGATCTTCTCT 1834
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 292 CAAGAGGTTGAAGTATTGTCTCATATCACATGGAAACCCAAATGGGGAATGATCTTCTCT 351
Query 1835 GATATCAAAAAGAAAGTCAGCGGGAACTGCGAGGTCTCTCAGAGATCCACAATGGC 1890
|||||||||||||||||| || ||||||||||||||||||||||||| || |||||
Sbjct 352 GATATCAAAAAGAAAGTCTGCAGGAACTGCGAGGTCTCTCAGAGATCAACGATGGC 407
> Ahg894642 jgi|Araly1|894642|Al_scaffold_0006_2638
Length=432
Score = 104 bits (56), Expect = 3e-21
Identities = 60/62 (97%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 1775 CAAGAGGTTGAAGTATGGTCTCGTATCACATGGAAACCCAAATGGGGAATGATCTTCTCT 1834
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 349 CAAGAGGTTGAAGTATTGTCTCATATCACATGGAAACCCAAATGGGGAATGATCTTCTCT 408
Query 1835 GA 1836
||
Sbjct 409 GA 410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89473985505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5