BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52570.1
Length=1145
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495328 jgi|Araly1|495328|fgenesh2_kg.8__1144__AT5G52570.1 1421 0.0
Ahg492254 jgi|Araly1|492254|fgenesh2_kg.7__1687__AT4G25700.1 749 0.0
> Ahg495328 jgi|Araly1|495328|fgenesh2_kg.8__1144__AT5G52570.1
Length=1030
Score = 1421 bits (769), Expect = 0.0
Identities = 925/997 (93%), Gaps = 24/997 (2%)
Strand=Plus/Plus
Query 83 TAAAGTTTCATAAAACCTCAACGAACTCCTTCCATGGCAGCAGGACTATCAACAATCGCC 142
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 21 TAAAGTTTCATAAAACCTCAACGAGCTCCTTCCATGGCAGCAGGACTCTCAACAATCGCC 80
Query 143 GTAACACTCAAACCACTCAACCGCTCTTCTTTCTCCGCAAACCACCCTATATCCACCGCA 202
|||||||||||||||||| | | | | | || |||||||||||| ||| |||||
Sbjct 81 GTAACACTCAAACCACTC-A-C-C-C-GC---CT----AAACCACCCTATCTCCGCCGCA 128
Query 203 GTTTTCCCTCCATCTCTAAGATTCAACGGCTTCCGACGTCGAAAGATTCTCACCGTTTGT 262
||||||||||||||||| |||||||||||||| ||||||||||||| |||||| |||||
Sbjct 129 GTTTTCCCTCCATCTCTCAGATTCAACGGCTTAAGACGTCGAAAGATCCTCACCATTTGT 188
Query 263 TTCGTCGTGGAAGAACGGAAACAAAGCTCTCCCATGGACGATGACAACAAACCAGAAAGC 322
|| ||||| |||||||||||||| ||||||||||||||| | ||||||| ||||||
Sbjct 189 TTTGTCGTTGAAGAACGGAAACAGAGCTCTCCCATGGAC---G---ACAAACCGGAAAGC 242
Query 323 ACGACAAGCTCTTCTGAGATCTTGATGACGTCGCGGCTTCTCAAGAAAGCGGAGAAGAAG 382
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 243 ACGACGAGCTCTTCTGAGATCTTGATGACGTCGCGGCTTCTCAAGAAAGCAGAGAAGAAG 302
Query 383 AAATCAGAGAGGTTCACTTATTTAATAGCAGCTGTGATGTCGAGCTTTGGTATCACTTCT 442
||||||||||| ||||||||| |||| |||||||||||||| ||||||||| ||||||||
Sbjct 303 AAATCAGAGAGATTCACTTATCTAATCGCAGCTGTGATGTCAAGCTTTGGTGTCACTTCT 362
Query 443 ATGGCTATAATGGCTGTTTATTACCGATTTTCTTGGCAAATGAAGGGAGGTGAAGTGTCT 502
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 363 ATGGCTATCATGGCTGTTTATTATCGATTTTCTTGGCAAATGAAGGGAGGTGAAGTGCCT 422
Query 503 GTGTTAGAGATGTTTGGTACATTTGCTCTTTCCGTTGGTGCTGCCGTTGGGATGGAGTTT 562
| | |||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 423 TTATCAGAGATGTTTGGTACATTTGCTCTCTCAGTTGGTGCTGCCGTTGGGATGGAGTTT 482
Query 563 TGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGATTCTTTATGGAACATGCATGAGTCA 622
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 483 TGGGCAAGATGGGCTCATAGAGCTCTTTGGCACGATTCTTTATGGAACATGCATGAGTCT 542
Query 623 CATCACAAACCAAGAGAAGGAGCGTTTGAGTTAAACGATGTGTTTGCTATAACAAACGCG 682
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 543 CATCACAAACCAAGAGAAGGAGCGTTTGAGTTAAACGATGTGTTCGCTATAATAAACGCG 602
Query 683 GTTCCTGCGATTGGTCTACTCTATTATGGATTCTTGAATAAAGGACTTGTTCCTGGTCTC 742
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 603 GTTCCTGCGATTGGTCTACTCTATTATGGATTCTTTAATAAAGGACTTGTTCCTGGTCTC 662
Query 743 TGCTTCGGTGCCGGACTGGGAATAACGATGTTTGGAATGGCTTACATGTTCGTTCACGAT 802
||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||
Sbjct 663 TGCTTCGGTGCCGGACTGGGAATAACGGTGTTTGGAATGGCTTACATGTTTGTCCACGAT 722
Query 803 GGACTTGTGCACAAGAGATTCCCTGTAGGTCCCATTGCCAACGTTCCTTACCTTCGAAAG 862
||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 723 GGACTCGTGCACAAGAGATTCCCTGTCGGTCCCATTGCCAACGTTCCTTACCTCCGAAAG 782
Query 863 GTCGCCGCCGCTCACCAGCTACACCACACAGACAAATTCAAAGGTGTACCATATGGGCTG 922
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 783 GTCGCGGCCGCTCACCAGCTACACCACACAGACAAATTCAAGGGTGTACCATATGGGCTG 842
Query 923 TTTCTTGGACCAAAGGAAGTAGAAGAAGTGGGAGGAAAAGAAGAGTTGGAGAAAGAGATA 982
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 843 TTTCTTGGACCCAAGGAAGTGGAAGAAGTGGGAGGAAAAGAAGAGTTGGAGAAAGAGATA 902
Query 983 AGCCGGAGAATCAAATTATACAACAAGGGTTCTTCTACCTCTTAATTGCTACA-AACCC- 1040
||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||
Sbjct 903 AGCCGGAGAATCAAATTATACAACAAGGGTTCTTCTACCTCCTAATTGCTATATAACCCC 962
Query 1041 AATTTTACTTCTTTGAT----GTTTTTGTAATACATT 1073
|||||||||||||| || |||||||||||| |||
Sbjct 963 AATTTTACTTCTTTTATATATGTTTTTGTAATATATT 999
Score = 58.4 bits (31), Expect = 1e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 1104 AAAAATGACGTAGAAGAAAGAGTCAGGCTAA 1134
|||||||||||||||||||||||||||||||
Sbjct 1000 AAAAATGACGTAGAAGAAAGAGTCAGGCTAA 1030
> Ahg492254 jgi|Araly1|492254|fgenesh2_kg.7__1687__AT4G25700.1
Length=1159
Score = 749 bits (405), Expect = 0.0
Identities = 567/647 (88%), Gaps = 4/647 (1%)
Strand=Plus/Plus
Query 366 AGAAAGCGGAGAA-GAAGAAATCAGAGAGGTTCACTTATTTAATAGCAGCTGTGATGTCG 424
||||| ||| || ||||||||||||||||| ||||||| |||| || || ||| ||||
Sbjct 290 AGAAATTGGA-AAGGAAGAAATCAGAGAGGTCCACTTATCTAATCGCTGCAGTGTTGTCA 348
Query 425 AGCTTTGGTATCACTTCTATGGCTATAATGGCTGTTTATTACCGATTTTCTTGGCAAATG 484
|||||||||||||||||||||||| | ||||||||||| ||| |||| ||||||||||||
Sbjct 349 AGCTTTGGTATCACTTCTATGGCTGTTATGGCTGTTTACTACAGATTCTCTTGGCAAATG 408
Query 485 AAGGGAGGTGAAG-TGTCTGTGTTAGAGATGTTTGGTACATTTGCTCTTTCCGTTGGTGC 543
||||||||| || | || |||| ||||||||||||||||||||||| || ||||||||
Sbjct 409 GAGGGAGGTG-AGATCTCAATGTTGGAGATGTTTGGTACATTTGCTCTCTCTGTTGGTGC 467
Query 544 TGCCGTTGGGATGGAGTTTTGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGATTCTTT 603
||| ||||| ||||| ||||||||||||||||||||||||||||| ||||| | |||| |
Sbjct 468 TGCGGTTGGTATGGAATTTTGGGCAAGATGGGCTCATAGAGCTCTCTGGCACGCTTCTCT 527
Query 604 ATGGAACATGCATGAGTCACATCACAAACCAAGAGAAGGAGCGTTTGAGTTAAACGATGT 663
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 528 ATGGAATATGCATGAGTCACATCACAAACCAAGAGAAGGACCGTTTGAGTTAAACGATGT 587
Query 664 GTTTGCTATAACAAACGCGGTTCCTGCGATTGGTCTACTCTATTATGGATTCTTGAATAA 723
||||||||| ||||| ||||| ||||||||||| |||| |||||||||||| |||||
Sbjct 588 TTTTGCTATAGTGAACGCTGTTCCAGCGATTGGTCTCCTCTCTTATGGATTCTTCAATAA 647
Query 724 AGGACTTGTTCCTGGTCTCTGCTTCGGTGCCGGACTGGGAATAACGATGTTTGGAATGGC 783
|||||| ||||||||||||||||| || ||||| | ||||||||| |||||||||| ||
Sbjct 648 AGGACTCGTTCCTGGTCTCTGCTTTGGCGCCGGGTTAGGAATAACGGTGTTTGGAATCGC 707
Query 784 TTACATGTTCGTTCACGATGGACTTGTGCACAAGAGATTCCCTGTAGGTCCCATTGCCAA 843
|||||||| || |||||||| || ||||||||| | ||||||||||||||||| ||| |
Sbjct 708 CTACATGTTTGTCCACGATGGTCTGGTGCACAAGCGTTTCCCTGTAGGTCCCATCGCCGA 767
Query 844 CGTTCCTTACCTTCGAAAGGTCGCCGCCGCTCACCAGCTACACCACACAGACAAATTCAA 903
||| |||||||| || ||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 768 CGTCCCTTACCTCCGGAAGGTCGCCGCCGCTCACCAGTTACATCACACAGACAAATTCAA 827
Query 904 AGGTGTACCATATGGGCTGTTTCTTGGACCAAAGGAAGTAGAAGAAGTGGGAGGAAAAGA 963
|||||||||||||| |||||||||||||| |||||| | |||||||| |||||||| ||
Sbjct 828 TGGTGTACCATATGGACTGTTTCTTGGACCCAAGGAATTGGAAGAAGTTGGAGGAAATGA 887
Query 964 AGAGTTGGAGAAAGAGATAAGCCGGAGAATCAAATTATACAACAAGG 1010
|||||| || || ||||| || ||||||||||||| ||||| ||||
Sbjct 888 AGAGTTAGATAAGGAGATTAGTCGGAGAATCAAATCGTACAAAAAGG 934
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42697667040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5