BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52580.2
Length=2401
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495330 jgi|Araly1|495330|fgenesh2_kg.8__1146__AT5G52580.1 1829 0.0
> Ahg495330 jgi|Araly1|495330|fgenesh2_kg.8__1146__AT5G52580.1
Length=2127
Score = 1829 bits (990), Expect = 0.0
Identities = 1050/1079 (97%), Gaps = 3/1079 (0%)
Strand=Plus/Plus
Query 1290 TTCACAGCATTGTTGGATTCTGAAGGGCGAGTTGTGGAATCAAAAGCTCTTCGGGAGAGA 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 TTCACAGCATTGTTGGATTCTGAAGGGCGAGTTGTGGAATCAAAAGCTCTTCGGGAGAGA 1110
Query 1350 GTTTTCTATGGAGGCATTGAGCACCAGTTGCGTAGAGAGGTATGGCCCTTTCTCTTGGGA 1409
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1111 GTTTTCTATGGAGGCATTGAGCACCAATTGCGAAGAGAGGTATGGCCCTTTCTCTTGGGA 1170
Query 1410 TATTATGCATATGACTCGACATATGCAGAGAGAGAATATCTTCGATCTGTCAAACGGATG 1469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 TATTATGCATATGACTCGACATATGCAGAGAGAGAATATCTTCGATCTGTCAAACGGATG 1230
Query 1470 GAATATGCAACATTGAAACAGCAGTGGCAGAGCATTTCCCCTGAACAAGCAAAAAGGTTC 1529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 GAATATGCAACATTGAAACAGCAGTGGCAGAGCATTTCCCCTGAACAAGCAAAAAGGTTC 1290
Query 1530 ACAAAATATCGGGAGAGAAAAGGATTGATAGATAAAGATGTGGTAAGAACTGATAGGGCA 1589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1291 ACAAAATATCGGGAGAGAAAAGGATTGATAGATAAAGATGTGGTAAGAACTGATAGGGCA 1350
Query 1590 TTTGAATACTATGAAGGGGATGACAATCTACATGTCAATAGCATGCGTGATATTCTGTTG 1649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 TTTGAATACTATGAAGGGGATGACAATCTACATGTCAATAGCATGCGTGATATTCTGTTG 1410
Query 1650 ACCTACTCCTTCTACAATTTTGACCTGGGTTACTGCCAGGGAATGAGTGATTATCTGTCT 1709
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1411 ACATACTCCTTCTACAATTTTGACCTGGGTTACTGCCAGGGAATGAGTGATTATCTGTCT 1470
Query 1710 CCTATCTTGTTCGTGATGGAGGATGAATCAGAATCTTTTTGGTGTTTCGTGGCACTGATG 1769
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1471 CCTATCTTGTTCGTGATGGAGGATGAATCAGAATCCTTTTGGTGTTTCGTGGCACTGATG 1530
Query 1770 GAACGACTTGGACCCAACTTTAACCGTGACCAGAATGGGATGCATACTCAGCTCTTTGCA 1829
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1531 GAACGCCTCGGACCCAACTTTAACCGTGACCAGAATGGGATGCATACTCAGCTCTTTGCA 1590
Query 1830 CTCTCAAAGCTGGTAGAGTTGCTCGATAGCCCGCTACATAATTACTTTAAGGAGAATGAC 1889
|||||||||||||||||||||||||||| |||||| ||||||||||| ||| ||||||||
Sbjct 1591 CTCTCAAAGCTGGTAGAGTTGCTCGATACCCCGCTGCATAATTACTTCAAGCAGAATGAC 1650
Query 1890 TGCTTGAATTACTTCTTCTGTTTCCGCTGGATTCTGATTCAGTTTAAAAGGGAATTTGAG 1949
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1651 TGCTTAAATTACTTCTTCTGTTTCCGCTGGATCCTGATTCAGTTTAAAAGGGAATTTGAG 1710
Query 1950 TATGAGAAGACAATGCAGCTGTGGGAGGTGATGTGGACCCACTACCTCTCGGAACATTTT 2009
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1711 TACGAGAAGACAATGCAGCTGTGGGAGGTGATGTGGACCCACTACCTCTCGGAACATTTT 1770
Query 2010 CACCTATATGTTTGTGTGGCGGTCTTGAAGCGATGCCGCAGCAAGATAATGGGAGAACAG 2069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771 CACCTATATGTTTGTGTGGCGGTCTTGAAGCGATGCCGCAGCAAGATAATGGGAGAACAG 1830
Query 2070 ATGGATTTTGACACTCTCTTAAAGTTCATCAATGAGCTGTCTGGGCATATTGATCTCGAT 2129
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1831 ATGGATTTTGACACTCTCTTAAAGTTCATCAATGAGCTGTCTGGGCATATTGACCTCGAT 1890
Query 2130 TCAACAGTCAGAGATGCCGAAGCACTTTGCATA-GAAGCTGGTGAAAATGGTGCTGCTAG 2188
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1891 TCAACAGTCAGAGATGCCGAAGCACTTTGCATATGT-GCTGGTGAAAATGGTGCTGCTAG 1949
Query 2189 CATTCCTCCAGGAACCCCTCCTTCTCTACCCCTTGATGACGGTACCTTATATCCTCAGGA 2248
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1950 TATTCCTCCAGGAACCCCTCCTTCTTTACCCCTTGATGACGGTACCTTATATCCTCAGGA 2009
Query 2249 AGATGATGTTTTGTAAGTAATACGACTTTTCTTTTTTCTTCTGGACATGTTACCAAAATT 2308
||||||||||||||||||||||| ||||| |||||| |||| |||||||||||||||||
Sbjct 2010 AGATGATGTTTTGTAAGTAATACAACTTTGCTTTTT-CTTCAAGACATGTTACCAAAATT 2068
Query 2309 TGGATTGCTTTTACTAGAAATCCCATACAATGATTAAGGCAAAGGACATAAGCtttttt 2367
||||||||||| || ||||||||||||||||||||||| ||| ||| ||||||||||||
Sbjct 2069 TGGATTGCTTTGACCAGAAATCCCATACAATGATTAAGTCAATGGATATAAGCTTTTTT 2127
Score = 1642 bits (889), Expect = 0.0
Identities = 1000/1053 (95%), Gaps = 9/1053 (1%)
Strand=Plus/Plus
Query 192 ATGAGTATGGAAGCAACGGAGCTACAAGATCTCTCTGACGACGCCGATTACGCCGCTTCT 251
||||||||||||||| |||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 1 ATGAGTATGGAAGCATCGGAGCTACAGGATCTCTCCGACGACGCCGATTACGCTGCTTCT 60
Query 252 CAACAACAAGGATCGGCTAGTATGATGCGTAGCGATAGCGGAAAGAGAAGTTTACAAAGT 311
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 61 CAACAACAAGGATCGGCTAGTATGATGCGTAGCGATAGCGGAAAGAGAAGTTCACCTAGT 120
Query 312 GAACACGAAGACGCTGTATTGATTTATTTGAAAGATAACGTTGCAATTCATCCTACACAG 371
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 GAACACGAAGACGCTGAATTGATATATTTGAAAGATAACGTTGCAATTCATCCTACACAG 180
Query 372 TTCGCATCTGAGAGGATTAGTGGTAGATTGAAGTTGACTAAGCAAGACTCTGTTCTCTTT 431
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 TTCGCATCTGAGAGGATTAGTGGTAGATTGAAGTTGACTAAGCAAGATTCTGTTCTCTT- 239
Query 432 CT-GTCGTGGATTCCGTACAAGGGACAAACATCAAATGCAAAGCTATCAGAGAAAGACAG 490
|| ||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||
Sbjct 240 CTTGTCGTGGATTCCGTACAAGGGACAAACTTCAAATGCAAAGTTATCAGAAAAAGACAG 299
Query 491 GAGTCTTTATACCATCACCGCGGTTCCGTTTACTGAAGTGAGGTCCATTAGGAGACACAC 550
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 300 GAGTCTTTATACCATCACCGCGGTTCCGTTTACTGAAGTGAGGTCCATTAGGCGACACAC 359
Query 551 TCCTGCTCTCGGATGGCAGTATGTAATTGTTGTCCTGTCTTCTGGACTTGCATTTCCACC 610
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 TCCTACTCTCGGATGGCAGTATGTAATTGTTGTCCTGTCTTCTGGACTTGCATTTCCGCC 419
Query 611 TCTGTACTTCTACAATGGAGGAGTCAGGGAGTTTCTGGCCATGGTGAAGCAGCATGTTTT 670
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 TCTGTACTTCTATAATGGAGGAGTCAGGGAGTTTCTGGCCATAGTGAAGCAGCATGTTTT 479
Query 671 TCTTGCAAGGTCGTCAGAAGATCAAAATGTGTTCATTGTGAATGATTTTCAGAGTCCCTT 730
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 480 TCTTGCAAGGTCGTCAGAAGATCCAAATGTGTTCATTGTGAATGATTTTCAGAGTCCCTT 539
Query 731 GCAGAGAACTTTGTCTTCATTGGAGCTGCCAAGTTCACTGCCTGTAGCAAGTGGACAATC 790
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GCAGAGAACTTTGTCATCATTGGAGCTGCCAAGTTCACTGCCTGTAGCAAGTGGACAATC 599
Query 791 CGTATACCCATTAGACGGAGGTTCTTCTAGTGAAAATCAAAGGAGAACAAGTTCAGATGT 850
|||||||| ||||||||||||||||||| ||||||||| ||||||||||| ||||| |
Sbjct 600 AGTATACCCCTTAGACGGAGGTTCTTCTAACGAAAATCAAGGGAGAACAAGTGCAGATAT 659
Query 851 TGGTAATAGAGTATCTAGTGTT-TCCCAGTCTGG-CTTCAGAAAGCAAAAGAGTCATGAT 908
|||||||||||| ||||||||| ||| ||||||| || |||||||| |||| |||||||
Sbjct 660 TGGTAATAGAGTTTCTAGTGTTATCC-AGTCTGGTCTG-AGAAAGCACAAGAATCATGAT 717
Query 909 CCAACTCGGGATCTTTCAATCCATCTACTAGAGAAGTTTTCTCTGGTTACCAAATTTGCT 968
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 718 CCAACTCGGGATCTTTCAATCCATCTTCTAGAGAAGTTTTCTCTGGTTACCAAATTTGCT 777
Query 969 CGAGATACAACTACTCAGCTGTTTTCGGAAAACAATGGCTTTGGTTCCATTGACAAGAGA 1028
|||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||
Sbjct 778 CGAGATACAACTACTCAGTTGTTTTCCGAAAACAATGGCTTTGGTTCCGTTGACAAGAGA 837
Query 1029 TGGAATAACCAACCCGTACATAGTTATCCTGAAAAGTTGTCGAACATTGCTGAGGAAAAG 1088
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 838 TGGAATAACCAACCCGTACATAGTTATCCTGAAAAGTTGTCAAATATTGCTGAGGAAAAG 897
Query 1089 CATCATGAAATCCGTCATAGTTATTCTGAAAATGACCTTCTCAAGGATGACGAAATTTCT 1148
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 898 CATAATGAAATCCGTCATAGTTATTCTGAAAATGACCTTCTCAAGGATGAAGAAATTTCT 957
Query 1149 TAT-A--TTGATGTCCCTGCTGATCCCTTAGAGTTTGATAAATTAAGTTTGATGTGGGGA 1205
|| | ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||
Sbjct 958 AATGACATTGATGTCCCTGCGGATCCCTTAGAGTTTAATAAATTAAGTTTGGTGTGGGGA 1017
Query 1206 AAACCAAGGCAACCACCAATGGGGCATAAAGAG 1238
|| ||||||||||||||||||||||||||||||
Sbjct 1018 AAGCCAAGGCAACCACCAATGGGGCATAAAGAG 1050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90464331875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5