BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52600.1
Length=701
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916891 jgi|Araly1|916891|Al_scaffold_0008_1642 922 0.0
> Ahg916891 jgi|Araly1|916891|Al_scaffold_0008_1642
Length=609
Score = 922 bits (499), Expect = 0.0
Identities = 576/612 (94%), Gaps = 9/612 (1%)
Strand=Plus/Plus
Query 1 ATGGAATGCAAAAGAGAAGAAGGGAAGTCTTACGTGAAGAGAGGGTTGTGGAAACCAGAA 60
|||||| |||||| | ||||||||||||||||||||||||||| |||||| |||| |||
Sbjct 1 ATGGAACACAAAAGGGCAGAAGGGAAGTCTTACGTGAAGAGAGGTTTGTGGCAACCTGAA 60
Query 61 GAAGATATGATATTAAAAAGCTATGTTGAGACTCATGGTGAAGGAAACTGGGCAGACATT 120
||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 61 GAAGACATGATATTAAAAAGCTGTGTTGAGACTCATGGAGAAGGAAACTGGGCAGACATT 120
Query 121 TCTCGTAGATCCGGGTTGAAGAGAGGAGGAAAAAGCTGTAGGCTGAGATGGAAGAACTAT 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 TCTCGTAGATCCGGGTTGAAGAGAGGAGGAAAAAGCTGTAGGTTGAGATGGAAGAACTAT 180
Query 181 CTAAGACCAAATATCAAAAGAGGAAGCATGTCACCACAAGAACAAGACCTTATCATCCGC 240
||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 181 CTAAGACCAAATATCAAAAGAGGAAGCATGTCACCTCAAGAACAAGACCTCATTATCCGC 240
Query 241 ATGCATAAGCTTCTTGGAAACAGATGGTCGTTGATCGCTGGTCGCCTTCCAGGTCGTACT 300
||||||||||||||||||||| |||||||||||||||| ||||| || |||||||| |||
Sbjct 241 ATGCATAAGCTTCTTGGAAACCGATGGTCGTTGATCGCCGGTCGTCTCCCAGGTCGCACT 300
Query 301 GACAATGAAGTGAAGAACTACTGGAATACTCATTTGAACAAGAAACCTAATTCCCGAAGA 360
||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||| |
Sbjct 301 GACAATGAAGTCAAGAACTACTGGAATACTCATTTGAACAAGAAATCTAGTTCCCGAAAA 360
Query 361 CAGAATGCACCTGAATCAATCGTCGGCGCCACTCCTTTCACGGATAAGCCAGTTATGTCT 420
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 361 CAGAATGCACCTGAATCAA---TCGGCGCCACTCCTTTCACCGATAAGCCAGTTATGTCT 417
Query 421 ACAGAACTGAGAAGAAGCCAT-G-G-AGAA-G-G-AGGAGAAGAGGAGAGCAATACCTGG 474
||||||||||||||||||||| | | |||| | | |||||||||||||||||||||||||
Sbjct 418 ACAGAACTGAGAAGAAGCCATGGAGAAGAAGGAGAAGGAGAAGAGGAGAGCAATACCTGG 477
Query 475 ATGGAGGAGACCAACCACTTTGGCTATGACGTCCACGTAGGATCTCCCTTGCCACTTATT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ATGGAGGAGACCAACCACTTTGGCTATGACGTCCACGTAGGATCTCCCTTGCCACTTATT 537
Query 535 TCCCACTACCCAGACAACACTCTCGTGTTTGACCCATGTTTTTCCTTTACCGATTTCTTT 594
||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||
Sbjct 538 TCCCACTACCCAGACAACACTCTTGTGTTTGACCCATGTTTTGCCTTTACTGATTTCTTT 597
Query 595 CCTCTGCTTTAG 606
||||||||||||
Sbjct 598 CCTCTGCTTTAG 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25771091892
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5