BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52610.1
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949826 jgi|Araly1|949826|scaffold_801713.1 1271 0.0
Ahg920858 jgi|Araly1|920858|scaffold_102139.1 859 0.0
> Ahg949826 jgi|Araly1|949826|scaffold_801713.1
Length=1090
Score = 1271 bits (688), Expect = 0.0
Identities = 946/1067 (89%), Gaps = 31/1067 (3%)
Strand=Plus/Plus
Query 1 ATGATTT-CTGAAGACCTTTTGGTCGAAATTCTCTTAAGATTGCCTGTGAAACCCCTAGC 59
||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 21 ATG-TTTACTGAAGACCTTTTGGTCGAAATTCTCTTAAGATTGCCTGTGAAAACCCTAGC 79
Query 60 TAGATGCCTATGTGTGTGCAAGCTTTGGGCCACAATCATCCGCAGTCGATATTTCATCAA 119
| ||| |||||||||| |||||||| |||| ||||||||||||||||| ||||||||||
Sbjct 80 GATATGTCTATGTGTGTCCAAGCTTTTGGCCTCAATCATCCGCAGTCGACATTTCATCAA 139
Query 120 CTTATACCAATCTCGATCCTCTACTCGTCAGCCATATGTCATGTTTGCTTTACGTGATAT 179
|||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||
Sbjct 140 CTTATACCAATCTCGATCCTCTACTCATCAGCAACATGTCATGTTTGCTTTACGTGATAT 199
Query 180 ATTCACATCTTGTCGTTGGCATTTCTTCTCGTCATCCCAACCTTCTTTGGTTACCAAGGC 239
|||||| | || ||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 200 ATTCACGTTTTCTCGTTGGCATTTCTTCTTATCATCCCAACCTTCTTTGGTTACCAATGC 259
Query 240 GACATGCAGCGCCAATAATTCTTCTCAT-ACGCCTGATTGTGTCAATGGCTTGATATGTG 298
|| |||| ||| | ||||| |||||| | ||||||||||| ||||||||||||||||||
Sbjct 260 GATATGCTGCGTCGATAATACTTCTC-TCACGCCTGATTGCGTCAATGGCTTGATATGTC 318
Query 299 TCGAATACATGTC-TCAACTGTGGATATCCAATCCTGCCACGCGTAAGGGTGTACTCGTG 357
||||| ||||| | || | ||||||||| ||||||||||||| | || || ||||| ||
Sbjct 319 TCGAAGACATG-CATCGATTGTGGATATACAATCCTGCCACGAGAAAAGGCGTACTTTTG 377
Query 358 CCCCAATCCGCTCCAC-ATCAAAA-GTTCAGGAAATGGTATATGGGATATGATCCTATCA 415
|||||||||||||| | || ||| ||| |||||||||||||||||||| ||||||||||
Sbjct 378 CCCCAATCCGCTCC-CTAT-AAACCGTTTAGGAAATGGTATATGGGATACGATCCTATCA 435
Query 416 ATTATCAATACAAGGTTTTGTTTTTCTCAAAACAATATTTATTATCTCCCTATAAACTGG 475
|||||||||| ||||| ||||||||||||||| || | ||| ||| |||||||||| |||
Sbjct 436 ATTATCAATATAAGGTATTGTTTTTCTCAAAAGAAAAGTTAGTATGTCCCTATAAAGTGG 495
Query 476 AAGTGTTTACATTGGAAGGTCAAGGTTCATGGAAAATGATCGAGGTTGAGAATATTCCTT 535
||||||||||||||| |||||||||||||||||||||||| ||||||||||||| || ||
Sbjct 496 AAGTGTTTACATTGGGAGGTCAAGGTTCATGGAAAATGATTGAGGTTGAGAATAATCATT 555
Query 536 CTCCCTCAACCAGAGGAATATGCATCGATGGGGTTGTGTATTACGGTGCTCAGACGGCGC 595
||||| ||||||||||| ||||||||||||||||||||||||||||| |||| |||||||
Sbjct 556 CTCCCGCAACCAGAGGAGTATGCATCGATGGGGTTGTGTATTACGGTTCTCACACGGCGC 615
Query 596 ATGGACTGAGGCTTGTTAGATTCTACGTGGCTACTGAAAAGTTTGGTGATTTCATTGAAA 655
|||||||||| |||| |||||||| ||||| || |||||||||||| ||||||||||||
Sbjct 616 ATGGACTGAGACTTGAGAGATTCTATGTGGCGACGGAAAAGTTTGGTAATTTCATTGAAA 675
Query 656 TACCGGTCGGGGCTAGTAA-TGTTTATGATATGAACTTTGGTTACTCTAAACTTGTGAAC 714
||||||||| ||||||||| | |||||| | | |||| || || ||||||||
Sbjct 676 TACCGGTCGAGGCTAGTAACT-TTTATGGTTT---CTTT----AC-CT----TTGTGAAC 722
Query 715 TATCAAGGGAAACTAGCTTTACTTGCTGCAAAAAGTATGAGCATGTATGATTTATGGGTT 774
|| |||||||||||||||||||||| | |||||| ||| | |||||||||||||||||||
Sbjct 723 TACCAAGGGAAACTAGCTTTACTTGTTACAAAAAATATTAACATGTATGATTTATGGGTT 782
Query 775 TTGGAAGATGCCGGGAAACAAGAATGGTCTAAGGTTTCTATCGTTTTAACTCGAGAGATG 834
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 783 TTGGAAGTTGCCGGGAAACAAGAATGGTCTAAGGTTTCTATCGTTTTACCTCGAGAGTTG 842
Query 835 TTTTCGTATGATCTTGTTTGGCTAG-GTGCGGTGGGTTTTGTTGCTGGTAGTGATGAGCT 893
|| ||||||||||||||||| |||| || | ||| ||||||||||||||||| ||||||
Sbjct 843 TTCTCGTATGATCTTGTTTGTCTAGAGTTAGTTGG-TTTTGTTGCTGGTAGTGGTGAGCT 901
Query 894 TATAGTTACAGCTCATGATCGATTTTATCAGATTTATCTTGTCTATGTTGATCTCAAGAT 953
|||||||||||||| ||||| || |||||| ||||||||||||||||||||||||||||
Sbjct 902 TATAGTTACAGCTCGTGATCAATCTTATCATCTTTATCTTGTCTATGTTGATCTCAAGAT 961
Query 954 GAAACGTTCAAGGGA-AGTTTGGCTCGGAGGGATCAGATGCTCAGATCGATCATCTTTA- 1011
||||||||||| | ||||||||| || ||||||||||||||| ||||| ||||||||
Sbjct 962 GAAACGTTCAAAT-ACAGTTTGGCTTGGGGGGATCAGATGCTCATATCGACCATCTTTAT 1020
Query 1012 --GTGCTTACTTTCACGGATTACGTTGAAAGTATTATGTTATTGTAA 1056
|||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1021 TAGTGCTTACTTTCACGGATTACGTTGAAAGTATTATGTTTTTGTAA 1067
> Ahg920858 jgi|Araly1|920858|scaffold_102139.1
Length=1108
Score = 859 bits (465), Expect = 0.0
Identities = 877/1075 (82%), Gaps = 32/1075 (3%)
Strand=Plus/Plus
Query 1 ATGATTTCTGAAGACCTTTTGGTCGAAATTCTCTTAAGATTGCCTGTGAAACCCCTAGCT 60
|||||| ||||||||||||||| |||||||||| |||| || ||||||||| || | ||
Sbjct 24 ATGATTCCTGAAGACCTTTTGGACGAAATTCTCCTAAGGTTACCTGTGAAAACCTTGGCG 83
Query 61 AGATGCCTATGTGTGTGCAAGCTTTGGGCCACAATCATCCGCAGTCGATATTTCATCAAC 120
||||| ||||| || | ||||| ||| | ||||||||||||||||| ||||||||||
Sbjct 84 AGATGTCTATGCGTATCCAAGCATTGCTACTCAATCATCCGCAGTCGACGTTTCATCAAC 143
Query 121 TTATACCAATCTCGATCCTCTACTCGTCAGCCATATGTCATGTTTGCTTTACGTGATATA 180
|||||||| |||||||||||||||||| || || ||||||||||||||| |||||| ||
Sbjct 144 TTATACCAGTCTCGATCCTCTACTCGTGAGTCACGTGTCATGTTTGCTTTCCGTGATGTA 203
Query 181 TTCACATCTT-GTCGTTGGCATTTCTTCT-CGT-CATC--CCAACCTTCTTTGGTTACCA 235
| ||||| || ||| ||| ||||||||| | | | || || ||||||||| |||||||
Sbjct 204 TACACAT-TTCTTCGCTGGTATTTCTTCTCCTTACCTCAACC-ACCTTCTTTAGTTACCA 261
Query 236 AGGCGACATGCAGC-GCCA-A-TA-ATTCTTCTCATACGCCTGATTGTGTCAATGGCTTG 291
| | |||||| || | | | || | |||| | || ||||| ||| ||| | ||||||
Sbjct 262 ATTCAACATGCTGCATCGATAGTACA-TCTTTTTGTATGCCTGTTTGCGTCCACGGCTTG 320
Query 292 ATATGTGTCGAATACATGTCTCAACTGTGGATATCCAATCCTGCCACGCGTAAGGGT-GT 350
|||||||||||| |||||| || |||||||||| |||||||| |||| | || ||| |
Sbjct 321 ATATGTGTCGAACACATGTTTCGGCTGTGGATATGCAATCCTGTCACG-GGAAAGGTCGC 379
Query 351 ACTCG-TGCCCCAATCC-GCTCCACATCAA-AAGTTCAGGAAATGGTATATGGGATATGA 407
||| | |||||||| || | ||| | | || || |||| || ||||||||||||||||||
Sbjct 380 ACT-GTTGCCCCAA-CCAGGTCCCCGTGAACAA-TTCACGACATGGTATATGGGATATGA 436
Query 408 TCCTATCAATTATCAATACAAGGTTTTGTTTTTCTCAAAACAATATTTATTATCTCCCTA 467
|||||||||||| || || ||||| |||||||| |||||| ||| ||||||| | | ||
Sbjct 437 TCCTATCAATTACCATTATAAGGTATTGTTTTTGTCAAAAAAATGTTTATTAGATGCATA 496
Query 468 TAAACTGGAAGTGTTTACATT-GGAAGGTCAAGGTTCATGGAAAATGATCGAGGTTGAGA 526
|||| |||||||||||||||| || || || || ||||||||| |||||||| || ||
Sbjct 497 TAAAGTGGAAGTGTTTACATTCGG-AGAAGAAAGTACATGGAAAACGATCGAGGATGGGA 555
Query 527 ATATTC-CTTCTCCCTCAACCAGAGGAATATGCATCGATGGGGTTGTGTATTACGGTGCT 585
|||||| ||| ||| ||||||||||||||||||| | |||||| ||||||||||||||
Sbjct 556 ATATTCACTT-TCCAGAAACCAGAGGAATATGCATCCACGGGGTTTTGTATTACGGTGCT 614
Query 586 CAGACGGCGCATGGACTGAGGCTTGTTAGATTCTACGTG-GCTACTGAAAAGTTTGGTGA 644
|| |||| | |||||| || |||| || ||| | ||| | || |||||||||||| |
Sbjct 615 CACACGGGGAATGGACCGAAAATTGTGAGGTTCGATGTGAG-GACGGAAAAGTTTGGTAA 673
Query 645 TTTCATTGAAATACCGGTC-GGGGCTAGTAATGTTTATGATATGAACTTT-GGTTACTCT 702
||||||||| | |||| | | |||| || | |||||| | || ||| |||| || |
Sbjct 674 GTTCATTGAATTTCCGG-CTGAGGCTTGTGGTATTTATGGTGTG-TGTTTGGGTTTCTAT 731
Query 703 AAACTTGTGAACTATCAAGGGAAACTAGCTTTACTTGCTGCAAAAAGTATGAGCATGTAT 762
| |||||| ||| |||||||| ||||||||||||||| |||||| || ||||| |||
Sbjct 732 ACCCTTGTGGCCTACCAAGGGAAGCTAGCTTTACTTGCTTCAAAAACCATAAGCATATAT 791
Query 763 GATTTATGGGTTTTGGAAGATGCCGGGAAACAAGAATGGTCTAAGGTTTCTATCGTTTTA 822
||||||||||||||||||||||||| |||||| | |||||||||||||||||||| ||
Sbjct 792 GATTTATGGGTTTTGGAAGATGCCGAGAAACATGCGTGGTCTAAGGTTTCTATCGTCATA 851
Query 823 ACTCGAGAGATGTTTTCGTATGATCTTGTTTGGCTAGGTGCGGTGGGTTTTGTTGCTGGT 882
|||| |||||||| |||||| || ||| |||||| ||||| | ||||||||||||||||
Sbjct 852 ACTCCAGAGATGTGTTCGTACGAGCTTATTTGGCCAGGTGTGACGGGTTTTGTTGCTGGT 911
Query 883 AGTGATGAGCTTATAGTTACAGCTCATGATCGATTTTATCAGATTT-ATCTTGTCTATGT 941
|||||||||||||||||||| |||| ||||| |||| || || ||| |||||||||||||
Sbjct 912 AGTGATGAGCTTATAGTTACTGCTCGTGATCAATTTCATGAG-TTTCATCTTGTCTATGT 970
Query 942 TGATCTCAAGATGAAACGTTCAAGGGAAGTTTGGCTCGGAGGGATCAGATGCTCAGATCG 1001
||||||||||| | ||||||| ||||||||| || ||| ||| ||||||| |||| | |
Sbjct 971 TGATCTCAAGACGCAACGTTCGAGGGAAGTTCGGTTCGAAGGAATCAGATCCTCATTTGG 1030
Query 1002 ATCATCTTTAGTGCTTACTTTCACGGATTACGTTGAAAGTATTATGTTATTGTAA 1056
|||||| | |||||| |||||||||||||||||||||||||| | ||| |||||
Sbjct 1031 ATCATCGCTGGTGCTTGCTTTCACGGATTACGTTGAAAGTATTGTTTTACTGTAA 1085
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39304727427
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5