BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52620.1
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495332 jgi|Araly1|495332|fgenesh2_kg.8__1148__AT5G52620.1 780 0.0
Ahg933241 jgi|Araly1|933241|scaffold_401229.1 237 1e-61
Ahg336232 jgi|Araly1|336232|fgenesh1_pg.C_scaffold_1002797 52.8 5e-06
> Ahg495332 jgi|Araly1|495332|fgenesh2_kg.8__1148__AT5G52620.1
Length=1068
Score = 780 bits (422), Expect = 0.0
Identities = 578/651 (89%), Gaps = 20/651 (3%)
Strand=Plus/Plus
Query 19 TCAGATCCAATCCCGATTG--AT-A---TCAT-TCTCGATATACTCTCGAGATTGTCTAC 71
|||||||||||||||| || || | || | |||||||||||| |||| ||||||||
Sbjct 9 TCAGATCCAATCCCGACTGACATCATTCTCGTCTCTCGATATACTATCGAAATTGTCTAA 68
Query 72 TAATTCAATCGCTAAGTTTGGTCTCGCATCCAAGTTCTG-TGGATCTATACTAAGAGGTC 130
||| |||||||||| |||||||||||||| ||||||||| | | |||||||| |||||||
Sbjct 69 TAAGTCAATCGCTAGGTTTGGTCTCGCATACAAGTTCTGTTCG-TCTATACTTAGAGGTC 127
Query 131 AAGATTTCATTGAGTTGTTCCTAATTACTAGGCCCTTGAGTCGTCCACGTCTCTTATTCG 190
||||||||| | ||||||||| || ||||||||||||| ||| ||||||||||||||||
Sbjct 128 AAGATTTCACTAAGTTGTTCC-AA--ACTAGGCCCTTGACTCGGCCACGTCTCTTATTCG 184
Query 191 CGGTTCAAAATTCTGATAAGTGGTGCTTGTACTCGTCGCCTCAGTCTCAGTTTCCAGATG 250
| |||||||||||||||||||||||||| ||||||||||||||| | || ||||||||
Sbjct 185 CCGTTCAAAATTCTGATAAGTGGTGCTTATACTCGTCGCCTCAGCCGAAGAATCCAGATG 244
Query 251 AGAATCATTCTCTTGTAGTATCAGCCGATTTTCATATGGAGTTACGTAGAGACATGGGAC 310
||||||||||||||||| ||||| |||||||||||||| |||||| |||||||||| | |
Sbjct 245 AGAATCATTCTCTTGTACTATCAACCGATTTTCATATGCAGTTACCTAGAGACATGTGCC 304
Query 311 AAGAGATTTTTGGCCTTGTCTCTGGTTTGCTCTATTTCCCTAATACGC-GTACAGGCGAA 369
|||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||
Sbjct 305 AAGAGATTTTTGGCCTTGTCTCTGGTTTGCTCTATTTCCCTAATACGCTG-ACAGATAAA 363
Query 370 GTGCCGGTGATATGTAACCCTAGCACGGGACAATACGCAAGATTAACTCAAAGGAGTAGT 429
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||
Sbjct 364 GTGCCGGTGATATGTAACCCTAGCACGGGACAGTACGCAAGATTAACTCAATGGACAAGT 423
Query 430 ATGAACAATTTGAGCAGCTTATTAGGGTATGATCCGATTGGCAAAAAATACAAGGTAATC 489
| || |||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||
Sbjct 424 AAGAGCAATTTGAGCAGCTTATTAGGGTATGATCCTATTGGCAAACAATACAAGGTACTC 483
Query 490 ACACCAAGCAGTTCACATTTTGATCCAGAAAATATTCTGACATTAGGAACTGGAAAAGTA 549
||| |||||| |||| ||||| || || ||||||||| ||||||| ||||||||||||||
Sbjct 484 ACAACAAGCAATTCATATTTTAATTCACAAAATATTCAGACATTACGAACTGGAAAAGTA 543
Query 550 GCATGGAGGA-GTATCCGATGTCTCGTAGACCATTATCCTGA-AAGTGAAGGGATATGCA 607
|||||||||| | |||| |||||||||||||||||||||| | |||||||||||||||||
Sbjct 544 GCATGGAGGACG-ATCCAATGTCTCGTAGACCATTATCCT-ATAAGTGAAGGGATATGCA 601
Query 608 TCAATGGGGTGTTGTATTACATGGCTAGCAACAAATT-CCAGTTCAGTGGT 657
|||||||||| ||||||||||||||| || || | | |||||||||||||
Sbjct 602 TCAATGGGGTTTTGTATTACATGGCTCGCCACCA-TGACCAGTTCAGTGGT 651
Score = 472 bits (255), Expect = 3e-132
Identities = 374/430 (87%), Gaps = 14/430 (3%)
Strand=Plus/Plus
Query 700 TTTCTTAATGCGGATGTTGACGTAACCTTTTGTCCTGCGCTTGCTAAACTGATTAATTAC 759
||||| ||||||||| |||| ||||||| ||| || ||||||||||||||| |||||
Sbjct 652 TTTCTAAATGCGGATCATGACATAACCTTATGTTCTTTGCTTGCTAAACTGATCAATTAT 711
Query 760 AAGGGTAAATTATGCGTGCTTAGTTGTTTA-TGGGATAATCAAATTTATCCAAAGCCGCT 818
|||||||||||| | |||||| |||| ||| |||||||||||||||||| |||| | ||
Sbjct 712 AAGGGTAAATTAGGTGTGCTTCGTTG-TTATTGGGATAATCAAATTTATAAAAAG-C-CT 768
Query 819 TCGGTGGAAGGTACTTATGTTGTGGTTGTGGGTTCTAGAAGATGCCGAGAAAGAAGAATG 878
| | || ||| ||| |||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 769 T--G-GG-CTGTAGTTAAGTTGTGTTTGTGGGTTCTAGAGGATGCTGAGAAAGAAGAATG 824
Query 879 GTTGAAACGTGAATACACTTTGCCGGTGAATATCGTTCACGGCAATGTTTCCGTTGTTGG 938
||||||| ||||||||||||| || | | || || | || ||||||||||||||||
Sbjct 825 GTTGAAATGTGAATACACTTTACC-G-G----TCTTTAAGGGTTATGTTTCCGTTGTTGG 878
Query 939 AGTGACTGCTACTGGTGAAATTATTTTATCCATGGATTATACATCGGAATCCTTCTTTGT 998
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 879 AGTGACTGCTACTGGTGAAATTATTTTGTCCATGGATTATACATCGAAATCCTTCTTTGT 938
Query 999 TTACTACTTCAACCCCGAAAGAAACACTCTGGAAAAAGTTGAAATCCAAGGTTTTGAAGG 1058
|||||||||||||||||||| ||||||| || ||| ||||| ||||| ||| |||||||
Sbjct 939 TTACTACTTCAACCCCGAAACAAACACTTTGCAAAGAGTTGGAATCCTAGGGCTTGAAGG 998
Query 1059 GTCAGAGAAGAATCTTAGTAGTAGAGTTTACACCTTTGTTGACTATGCAGAAGATGTCAA 1118
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||
Sbjct 999 GTCAGAGAAGAATCTTAGTAGTAGAGTTCACACCTTTGTAGACTATGCAGAAGATTTCAA 1058
Query 1119 GTTTATATAA 1128
||||||||||
Sbjct 1059 GTTTATATAA 1068
> Ahg933241 jgi|Araly1|933241|scaffold_401229.1
Length=899
Score = 237 bits (128), Expect = 1e-61
Identities = 361/466 (77%), Gaps = 45/466 (10%)
Strand=Plus/Plus
Query 266 TAGTATCAGCCGATTTTCATATGGAGTTACGTAGAGACATGGGA-CAAGAGATTTTTGG- 323
||||||||||||| || |||||| |||||| | ||||||||||| | |||||||| |||
Sbjct 1 TAGTATCAGCCGACTTGCATATGCAGTTACCTGGAGACATGGGATC-AGAGATTTGTGGT 59
Query 324 CCTTGTCTCTGGTTTGCTCTATTTCCCTAATACGCGTACAGGCGAAGTGCCGGTGATATG 383
|| ||||||||| ||| ||||||||||||||| ||| | | | |||||||||||||||||
Sbjct 60 CC-TGTCTCTGGCTTGTTCTATTTCCCTAATATGCGGAGAAGTGAAGTGCCGGTGATATG 118
Query 384 TAACCCTAGCACGGGACAATACGCAAGATTAACTCAAAGGAGTAGTATGAACA-ATTTGA 442
|||||||||||| ||||| |||||||||||| ||||| || || | || ||| |
Sbjct 119 TAACCCTAGCACAGGACAGTACGCAAGATTACCTCAATTGAAAAGGAA-AAGGGATTCAA 177
Query 443 GCAGCTTATTAGGGTATGATCCGATTGGCAAAAAATACAAGGTAATCACACC-AAGCAGT 501
| ||||||||||| |||||||| |||||||||| ||| || ||| ||| || ||| | |
Sbjct 178 GAAGCTTATTAGGTTATGATCCTATTGGCAAAAGATATAAAGTA-TCAAACATAAGAAAT 236
Query 502 TCACATTT-TG-ATC--C-A--GAA-A---A--TATTCTGACATTAGGAACTGG-AAAA- 546
||| |||| || | | | | ||| | | |||| |||||||||||||||| ||||
Sbjct 237 TCA-ATTTATGGAGCATCTAATGAAGAGGGACATATTATGACATTAGGAACTGGGAAAAT 295
Query 547 GTAGCATGGAGGAGTA-TCCGAT-GTCTCGTAGA-CCATTATCCTGAAAGTG-AAGGGAT 602
|| ||||||| | | | | || ||| || | | |||||||||| | || | ||||| |
Sbjct 296 GT--CATGGAGAAA-ACTGC-ATTGTC-CGGAAAACCATTATCCT-ATAGGGGAAGGGGT 349
Query 603 ATGCATCAATGGGGTGTTGTATTACATGGCTAGCAACAAATTCCAGTTCAGTGGTGTGAA 662
||||||| ||||||| ||||||||||| ||| | | ||| | | || | ||||||
Sbjct 350 ATGCATCGATGGGGTTTTGTATTACATTGCTGG-A-CAAG--CAAA---AG-G-TGTGAA 400
Query 663 GATAGCTTCCTTTAATGTAAGGTATGAAACACTTAAG-TTTCTTAA 707
| |||||| |||| |||| ||| |||||| | || || ||||||||
Sbjct 401 GTTAGCTTGCTTTGATGTTAGGAATGAAA-ATTTTAGGTTTCTTAA 445
> Ahg336232 jgi|Araly1|336232|fgenesh1_pg.C_scaffold_1002797
Length=888
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 376 GTGATATGTAACCCTAGCACGGGACAAT 403
||||||||||||||||||||||||||||
Sbjct 112 GTGATATGTAACCCTAGCACGGGACAAT 139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42049577451
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5