BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G52620.1 Length=1128 Score E Sequences producing significant alignments: (Bits) Value Ahg495332 jgi|Araly1|495332|fgenesh2_kg.8__1148__AT5G52620.1 780 0.0 Ahg933241 jgi|Araly1|933241|scaffold_401229.1 237 1e-61 Ahg336232 jgi|Araly1|336232|fgenesh1_pg.C_scaffold_1002797 52.8 5e-06 > Ahg495332 jgi|Araly1|495332|fgenesh2_kg.8__1148__AT5G52620.1 Length=1068 Score = 780 bits (422), Expect = 0.0 Identities = 578/651 (89%), Gaps = 20/651 (3%) Strand=Plus/Plus Query 19 TCAGATCCAATCCCGATTG--AT-A---TCAT-TCTCGATATACTCTCGAGATTGTCTAC 71 |||||||||||||||| || || | || | |||||||||||| |||| |||||||| Sbjct 9 TCAGATCCAATCCCGACTGACATCATTCTCGTCTCTCGATATACTATCGAAATTGTCTAA 68 Query 72 TAATTCAATCGCTAAGTTTGGTCTCGCATCCAAGTTCTG-TGGATCTATACTAAGAGGTC 130 ||| |||||||||| |||||||||||||| ||||||||| | | |||||||| ||||||| Sbjct 69 TAAGTCAATCGCTAGGTTTGGTCTCGCATACAAGTTCTGTTCG-TCTATACTTAGAGGTC 127 Query 131 AAGATTTCATTGAGTTGTTCCTAATTACTAGGCCCTTGAGTCGTCCACGTCTCTTATTCG 190 ||||||||| | ||||||||| || ||||||||||||| ||| |||||||||||||||| Sbjct 128 AAGATTTCACTAAGTTGTTCC-AA--ACTAGGCCCTTGACTCGGCCACGTCTCTTATTCG 184 Query 191 CGGTTCAAAATTCTGATAAGTGGTGCTTGTACTCGTCGCCTCAGTCTCAGTTTCCAGATG 250 | |||||||||||||||||||||||||| ||||||||||||||| | || |||||||| Sbjct 185 CCGTTCAAAATTCTGATAAGTGGTGCTTATACTCGTCGCCTCAGCCGAAGAATCCAGATG 244 Query 251 AGAATCATTCTCTTGTAGTATCAGCCGATTTTCATATGGAGTTACGTAGAGACATGGGAC 310 ||||||||||||||||| ||||| |||||||||||||| |||||| |||||||||| | | Sbjct 245 AGAATCATTCTCTTGTACTATCAACCGATTTTCATATGCAGTTACCTAGAGACATGTGCC 304 Query 311 AAGAGATTTTTGGCCTTGTCTCTGGTTTGCTCTATTTCCCTAATACGC-GTACAGGCGAA 369 |||||||||||||||||||||||||||||||||||||||||||||||| | |||| || Sbjct 305 AAGAGATTTTTGGCCTTGTCTCTGGTTTGCTCTATTTCCCTAATACGCTG-ACAGATAAA 363 Query 370 GTGCCGGTGATATGTAACCCTAGCACGGGACAATACGCAAGATTAACTCAAAGGAGTAGT 429 |||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| Sbjct 364 GTGCCGGTGATATGTAACCCTAGCACGGGACAGTACGCAAGATTAACTCAATGGACAAGT 423 Query 430 ATGAACAATTTGAGCAGCTTATTAGGGTATGATCCGATTGGCAAAAAATACAAGGTAATC 489 | || |||||||||||||||||||||||||||||| ||||||||| ||||||||||| || Sbjct 424 AAGAGCAATTTGAGCAGCTTATTAGGGTATGATCCTATTGGCAAACAATACAAGGTACTC 483 Query 490 ACACCAAGCAGTTCACATTTTGATCCAGAAAATATTCTGACATTAGGAACTGGAAAAGTA 549 ||| |||||| |||| ||||| || || ||||||||| ||||||| |||||||||||||| Sbjct 484 ACAACAAGCAATTCATATTTTAATTCACAAAATATTCAGACATTACGAACTGGAAAAGTA 543 Query 550 GCATGGAGGA-GTATCCGATGTCTCGTAGACCATTATCCTGA-AAGTGAAGGGATATGCA 607 |||||||||| | |||| |||||||||||||||||||||| | ||||||||||||||||| Sbjct 544 GCATGGAGGACG-ATCCAATGTCTCGTAGACCATTATCCT-ATAAGTGAAGGGATATGCA 601 Query 608 TCAATGGGGTGTTGTATTACATGGCTAGCAACAAATT-CCAGTTCAGTGGT 657 |||||||||| ||||||||||||||| || || | | ||||||||||||| Sbjct 602 TCAATGGGGTTTTGTATTACATGGCTCGCCACCA-TGACCAGTTCAGTGGT 651 Score = 472 bits (255), Expect = 3e-132 Identities = 374/430 (87%), Gaps = 14/430 (3%) Strand=Plus/Plus Query 700 TTTCTTAATGCGGATGTTGACGTAACCTTTTGTCCTGCGCTTGCTAAACTGATTAATTAC 759 ||||| ||||||||| |||| ||||||| ||| || ||||||||||||||| ||||| Sbjct 652 TTTCTAAATGCGGATCATGACATAACCTTATGTTCTTTGCTTGCTAAACTGATCAATTAT 711 Query 760 AAGGGTAAATTATGCGTGCTTAGTTGTTTA-TGGGATAATCAAATTTATCCAAAGCCGCT 818 |||||||||||| | |||||| |||| ||| |||||||||||||||||| |||| | || Sbjct 712 AAGGGTAAATTAGGTGTGCTTCGTTG-TTATTGGGATAATCAAATTTATAAAAAG-C-CT 768 Query 819 TCGGTGGAAGGTACTTATGTTGTGGTTGTGGGTTCTAGAAGATGCCGAGAAAGAAGAATG 878 | | || ||| ||| |||||| |||||||||||||| ||||| |||||||||||||| Sbjct 769 T--G-GG-CTGTAGTTAAGTTGTGTTTGTGGGTTCTAGAGGATGCTGAGAAAGAAGAATG 824 Query 879 GTTGAAACGTGAATACACTTTGCCGGTGAATATCGTTCACGGCAATGTTTCCGTTGTTGG 938 ||||||| ||||||||||||| || | | || || | || |||||||||||||||| Sbjct 825 GTTGAAATGTGAATACACTTTACC-G-G----TCTTTAAGGGTTATGTTTCCGTTGTTGG 878 Query 939 AGTGACTGCTACTGGTGAAATTATTTTATCCATGGATTATACATCGGAATCCTTCTTTGT 998 ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 879 AGTGACTGCTACTGGTGAAATTATTTTGTCCATGGATTATACATCGAAATCCTTCTTTGT 938 Query 999 TTACTACTTCAACCCCGAAAGAAACACTCTGGAAAAAGTTGAAATCCAAGGTTTTGAAGG 1058 |||||||||||||||||||| ||||||| || ||| ||||| ||||| ||| ||||||| Sbjct 939 TTACTACTTCAACCCCGAAACAAACACTTTGCAAAGAGTTGGAATCCTAGGGCTTGAAGG 998 Query 1059 GTCAGAGAAGAATCTTAGTAGTAGAGTTTACACCTTTGTTGACTATGCAGAAGATGTCAA 1118 |||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||| Sbjct 999 GTCAGAGAAGAATCTTAGTAGTAGAGTTCACACCTTTGTAGACTATGCAGAAGATTTCAA 1058 Query 1119 GTTTATATAA 1128 |||||||||| Sbjct 1059 GTTTATATAA 1068 > Ahg933241 jgi|Araly1|933241|scaffold_401229.1 Length=899 Score = 237 bits (128), Expect = 1e-61 Identities = 361/466 (77%), Gaps = 45/466 (10%) Strand=Plus/Plus Query 266 TAGTATCAGCCGATTTTCATATGGAGTTACGTAGAGACATGGGA-CAAGAGATTTTTGG- 323 ||||||||||||| || |||||| |||||| | ||||||||||| | |||||||| ||| Sbjct 1 TAGTATCAGCCGACTTGCATATGCAGTTACCTGGAGACATGGGATC-AGAGATTTGTGGT 59 Query 324 CCTTGTCTCTGGTTTGCTCTATTTCCCTAATACGCGTACAGGCGAAGTGCCGGTGATATG 383 || ||||||||| ||| ||||||||||||||| ||| | | | ||||||||||||||||| Sbjct 60 CC-TGTCTCTGGCTTGTTCTATTTCCCTAATATGCGGAGAAGTGAAGTGCCGGTGATATG 118 Query 384 TAACCCTAGCACGGGACAATACGCAAGATTAACTCAAAGGAGTAGTATGAACA-ATTTGA 442 |||||||||||| ||||| |||||||||||| ||||| || || | || ||| | Sbjct 119 TAACCCTAGCACAGGACAGTACGCAAGATTACCTCAATTGAAAAGGAA-AAGGGATTCAA 177 Query 443 GCAGCTTATTAGGGTATGATCCGATTGGCAAAAAATACAAGGTAATCACACC-AAGCAGT 501 | ||||||||||| |||||||| |||||||||| ||| || ||| ||| || ||| | | Sbjct 178 GAAGCTTATTAGGTTATGATCCTATTGGCAAAAGATATAAAGTA-TCAAACATAAGAAAT 236 Query 502 TCACATTT-TG-ATC--C-A--GAA-A---A--TATTCTGACATTAGGAACTGG-AAAA- 546 ||| |||| || | | | | ||| | | |||| |||||||||||||||| |||| Sbjct 237 TCA-ATTTATGGAGCATCTAATGAAGAGGGACATATTATGACATTAGGAACTGGGAAAAT 295 Query 547 GTAGCATGGAGGAGTA-TCCGAT-GTCTCGTAGA-CCATTATCCTGAAAGTG-AAGGGAT 602 || ||||||| | | | | || ||| || | | |||||||||| | || | ||||| | Sbjct 296 GT--CATGGAGAAA-ACTGC-ATTGTC-CGGAAAACCATTATCCT-ATAGGGGAAGGGGT 349 Query 603 ATGCATCAATGGGGTGTTGTATTACATGGCTAGCAACAAATTCCAGTTCAGTGGTGTGAA 662 ||||||| ||||||| ||||||||||| ||| | | ||| | | || | |||||| Sbjct 350 ATGCATCGATGGGGTTTTGTATTACATTGCTGG-A-CAAG--CAAA---AG-G-TGTGAA 400 Query 663 GATAGCTTCCTTTAATGTAAGGTATGAAACACTTAAG-TTTCTTAA 707 | |||||| |||| |||| ||| |||||| | || || |||||||| Sbjct 401 GTTAGCTTGCTTTGATGTTAGGAATGAAA-ATTTTAGGTTTCTTAA 445 > Ahg336232 jgi|Araly1|336232|fgenesh1_pg.C_scaffold_1002797 Length=888 Score = 52.8 bits (28), Expect = 5e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 376 GTGATATGTAACCCTAGCACGGGACAAT 403 |||||||||||||||||||||||||||| Sbjct 112 GTGATATGTAACCCTAGCACGGGACAAT 139 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42049577451 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5