BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52630.1
Length=1767
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949828 jgi|Araly1|949828|scaffold_801715.1 2699 0.0
Ahg471265 jgi|Araly1|471265|fgenesh2_kg.1__1219__AT1G11290.1 54.7 2e-06
> Ahg949828 jgi|Araly1|949828|scaffold_801715.1
Length=1808
Score = 2699 bits (1461), Expect = 0.0
Identities = 1668/1770 (94%), Gaps = 6/1770 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCTGAATTCTTCAGCTTTCTTCGTTCCATGTCACAATTACAATCAAATCTGTGAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 22 ATGGCTCTGAATTCTTCAGCTTTCTTCGTTCCATGTCACAATTACAATCAAATTTGTGAT 81
Query 61 CTTCTTCTTTCTTCAGCTCGAACCAGATCAACTATTAAAGGACTTCAGCTTCATGGCTAT 120
|||||||||||||||||| || ||||||| | | ||||||||||||||||||||||||||
Sbjct 82 CTTCTTCTTTCTTCAGCTAGATCCAGATCCATTGTTAAAGGACTTCAGCTTCATGGCTAT 141
Query 121 GTCGTTAAATCAGGCCTTTCTCTTATCCCTCTCGTCGCTAACAACCTCATTAATTTCTAC 180
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 142 ATCGTTAAATCAGGCCTTTCTCTTATCCCTCTCGTCGCTAACAATCTCATTAATTTCTAC 201
Query 181 TCCAAATCACAGCTTCCGTTTGATTCTCGTCGAGCTTTTGAAGATAGCCCACAAAAAAGT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 202 TCCAAATCACAGCTTCCGTTTGATTCTCGTCGAGCTTTTGAAGATAGCCCACAAAAGAGT 261
Query 241 TCGACGACTTGGAGTTCAATCATCTCTTGTTTTGCCCAGAACGAGCTTCCATGGATGTCA 300
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 262 GCGACGACTTGGAGTTCAATCATCTCTTGTTTTGCTCAGAACGAGCTTCCATGGATGTCA 321
Query 301 CTCGAGTTTCTTaaaaaaaTGATGGCGGGAAACCTTAGACCTGATGATCATGTTCTTCCA 360
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 322 CTCGAGTTTCTTAGGAAAATGATGGCGGGAAGCCTTAGACCTGATGATCATGTTCTTCCG 381
Query 361 TCAGCTACAAAGTCGTGTGCG-ATTTTGAGTCGTTGTGATATTGGTAGATCAGTTCATTG 419
|| || || ||||| |||| | ||||||||||||||||||||||| ||||| ||||||||
Sbjct 382 TCTGCGACGAAGTCTTGTG-GAATTTTGAGTCGTTGTGATATTGGGAGATCGGTTCATTG 440
Query 420 TCTATCGATGAAGACTGGGTATGATGCTGATGTGTTTGTGGGGAGTTCTTTGGTTGATAT 479
||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 441 TCTTTCGATGAAGACTGGGTATGATGCTGATGTGTTCGTAGGGAGTTCTTTGGTTGATAT 500
Query 480 GTATGCGAAATGTGGAGAAATTGTTTATGCGAGGAAGATGTTCGACGAAATGCCTCAGAG 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 501 GTATGCGAAATGTGGAGAAATTGTTTATGCGAGGAAGATGTTCGACGAAATGCCTCTGAG 560
Query 540 AAATGTTGTTACTTGGAGTGGGATGATGTATGGGTATGCACAAATGGGTGAAAATGAGGA 599
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 561 AAATGTTGTTACTTGGAGTGGGATGATGTATGGGTATGCTCAAATGGGTGAAAATGAGGA 620
Query 600 AGCTTTGTGGTTGTTTAAAGAAGCTTTGTTTGAGAATCTCGCTGTTAATGATTACTCGTT 659
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 621 AGCTTTGTGGTTGTTTAAAGAAGCTTTGTTTGAAAATCTCGCTGTTAATGATTACTCGTT 680
Query 660 TTCGAGTGTTATTAGTGTTTGTGCAAATTCGACTCTACTTGAGTTAGGTAGACAGATTCA 719
||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 681 TTCGACTGTTATTAGTGTTTGTGCCAATTCGACTTTACTTGAGTTAGGTAGACAGATTCA 740
Query 720 TGGATTGAGTATTAAGTCTAGCTTTGATTCTTCTAGCTTTGTGGGAAGTTCTTTAGTCTC 779
|| ||| |||||||||| |||||||| || ||||| |||||||||||||| ||||||||
Sbjct 741 GGGGTTGTGTATTAAGTCCAGCTTTGACTCGTCTAGTTTTGTGGGAAGTTCGTTAGTCTC 800
Query 780 GTTGTATTC-AAAGTGTGGTGTTCCTGAAGGAGCTTATCAAGTTTTTAACGAGGTGCCTG 838
|||||||| ||| ||||||| || |||||||||||||||||||||| | |||||||||
Sbjct 801 ATTGTATTCGAAA-TGTGGTGATCTTGAAGGAGCTTATCAAGTTTTTGATGAGGTGCCTA 859
Query 839 TGAAGAATCTCGGGATTTGGAACGCTATGCTCAAGGCGTATGCGCAACATTCACATACTC 898
||| ||||||||||||||||||||| ||||| ||||| | ||||||||||||||||||||
Sbjct 860 TGAGGAATCTCGGGATTTGGAACGCGATGCTTAAGGCTTGTGCGCAACATTCACATACTC 919
Query 899 AAAAGGTTATTGAATTGTTCAAAAGGATGAAGCTTTCTGGAATGAAACCAAATTTCATAA 958
|||||||||||||||||||||| ||||||| || |||||||||||||||||||| ||||
Sbjct 920 AAAAGGTTATTGAATTGTTCAAGCGGATGAAACTCTCTGGAATGAAACCAAATTTTATAA 979
Query 959 CTTTTTTGAATGTGCTCAATGCTTGTAGTCACGCGGGTCTAGTTGATGAAGGGAGATACT 1018
||||| |||||||||||||||||||||| |||||||||||||| |||||||||| |||||
Sbjct 980 CTTTTCTGAATGTGCTCAATGCTTGTAGCCACGCGGGTCTAGTAGATGAAGGGAAATACT 1039
Query 1019 ACTTTGATCAGATGAAAGAATCGAGGATTGAGCCGACGGATAAGCATTACGCTTCCTTGG 1078
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1040 ACTTTGATCTGATGAAAGAATCGAGAATTGAGCCGACGGATAAGCATTACGCTTCCTTGG 1099
Query 1079 TGGATATGTTAGGACGAGCTGGTAGATTACAAGAAGCACTTGAAGTTA-TCACTAATATG 1137
|||||||| | ||||||||||||| | || |||||||||||||| | | |||| ||||||
Sbjct 1100 TGGATATGCTGGGACGAGCTGGTAAACTAGAAGAAGCACTTGAAAT-AGTCACGAATATG 1158
Query 1138 CCGATTGATCCCACGGAATCTGTATGGGGAGCTTTATTAACGAGTTGTACAGTCCACAAG 1197
|| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1159 CCAATCGATCCCACGGAATCTGTATGGGGAGCTTTATTAACGAGTTGTACAATCCACAAG 1218
Query 1198 AACACAGAGCTTGCAGCATTTGCAGCAGACAAGGTCTTCGAATTAGGACCAGTGAGTTCC 1257
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 AACACAGAACTTGCAGCATTTGCAGCAGACAAGGTCTTCGAATTAGGACCAGTGAGTTCC 1278
Query 1258 GGTATGCACATTTCGTTATCCAATGCTTATGCAGCCGATGGTAGATTCGAAGACGCAGCT 1317
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1279 GGTATGCACATTTCTTTATCCAATGCTTATGCAGCTGATGGTAGATTCGAAGACGCAGCC 1338
Query 1318 AAAGCTAGAAAATTGCTTCGAGACCGAGGGGAAAAGAAGGAAACAGGGCTAAGTTGGGTT 1377
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 AAAGCTAGAAAATTGCTCCGAGACCGAGGGGAAAAGAAGGAAACAGGGCTAAGTTGGGTT 1398
Query 1378 GAAGAAAGGAACAAGGTTCATACATTTGCAGCTGGAGAAAGACGTCATGAGAAAAGCAAG 1437
|||||||||||||| ||||||||||||||||||||||||||||| || |||| |||||||
Sbjct 1399 GAAGAAAGGAACAAAGTTCATACATTTGCAGCTGGAGAAAGACGACACGAGAGAAGCAAG 1458
Query 1438 GAGATATATGAGAAGCTGGCTGAGTTAGGGGAAGAGATGGAGAAAGCGGGTTACATTGCA 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1459 GAGATATATGAGAAGCTGGCTGAGTTAGGGGAAGAGATGGAGAAAGCGGGTTATGTTGCA 1518
Query 1498 GACACAAGCTATGTTCTGAGAGAAGTGGATGGTGACGAGAAGAATCAAACCATAAGGTAT 1557
||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 1519 GACACAAGCTATGTTCTGAGAGAAGTGGATGGTGATGAGAAGAATCAGACAATAAGGTAT 1578
Query 1558 CATAGTGAGAGATTAGCTATTGCTTTTGGACTGATCACGTTTCCAGCTGATAGACCGATC 1617
||||| ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||
Sbjct 1579 CATAGCGAGAGATTAGCTATTGCTTTTGGGCTGATCGCGTTTCCGGCTGATAGACCGATC 1638
Query 1618 CGAGTAATGAAGAATCTGCGTGTTTGCGGTGATTGCCATAACGCGATCAAGTTCATGTCC 1677
|| || ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1639 CGGGTGATGAAGAATCTGCGTGTTTGCGGCGATTGCCATAATGCGATCAAGTTCATGTCC 1698
Query 1678 GTATGTACGAGACGAGTGATCATTGTGAGAGATAATAATCGGTTTCATCGGTTTGAAGAT 1737
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1699 ATATGTACGGGACGAGTGATCATTGTGAGAGATAACAATCGGTTTCATCGGTTTGAAGAT 1758
Query 1738 GGCAAGTGTTCTTGTAATGACTATTGGTGA 1767
||||| ||||||||||||||||||||||||
Sbjct 1759 GGCAAATGTTCTTGTAATGACTATTGGTGA 1788
> Ahg471265 jgi|Araly1|471265|fgenesh2_kg.1__1219__AT1G11290.1
Length=2430
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 467 CTTTGGTTGATATGTATGCGAAATGTGGA 495
|||||||||||||||||||||||||||||
Sbjct 827 CTTTGGTTGATATGTATGCGAAATGTGGA 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66315116545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5