BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52650.1
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495335 jgi|Araly1|495335|fgenesh2_kg.8__1151__AT5G52650.1 1037 0.0
Ahg492247 jgi|Araly1|492247|fgenesh2_kg.7__1680__AT4G25740.2 407 7e-113
> Ahg495335 jgi|Araly1|495335|fgenesh2_kg.8__1151__AT5G52650.1
Length=758
Score = 1037 bits (561), Expect = 0.0
Identities = 666/714 (93%), Gaps = 18/714 (3%)
Strand=Plus/Plus
Query 1 ATATAAAGTCATCGTCTTCTCTAG-TCCTGCGAAAACCCTAGTTTTTTGCTCTCTCGAAG 59
||||||| |||||||||||||| | ||||| ||||||||||| |||||||||||||||||
Sbjct 1 ATATAAAATCATCGTCTTCTCT-GATCCTGTGAAAACCCTAG-TTTTTGCTCTCTCGAAG 58
Query 60 TTCCGTGCGACTCTCTGCTCGAGCAAGATCTCCTACCGATACAATGATTATCTCAGAGGC 119
|| | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TT-C---CG--TCTCTGCTCGAGCAAGATCTCCTACCGATACAATGATTATCTCAGAGGC 112
Query 120 TAACCGCAAAGAAATCTGCAAGTACCTCTTCAAAGAAGGAGTTTGCTTTGCGAAGAAGGA 179
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 113 TAACCGCAAAGAAATCTGCAAGTACCTTTTCAAAGAAGGAGTTTGCTTTGCTAAGAAAGA 172
Query 180 TTTCAATCTTGCTAAGCATCCGTTGATCGATGTCCCCAACCTACAAGTGATTAAGCTTAT 239
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 173 TTTCAATCTTGCTAAGCATCCGTTGATCGATGTCCCGAACCTGCAAGTGATTAAGCTGAT 232
Query 240 GCAGAGTTTCAAATCCAAGGAGTATGTTAGGGAGACATTTGCCTGGATGCATTACTATTG 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 233 GCAGAGTTTCAAATCCAAGGAGTATGTTAGGGAGACATTTGCGTGGATGCATTACTATTG 292
Query 300 GTTTTTGACCAATGAAGGGATCGAGTTCTTGAGAACTTATCTTAATCTTCCATCTGATGT 359
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 293 GTTTTTGACCAATGAAGGAATTGAGTTCTTGAGAACTTATCTTAATCTTCCATCTGATGT 352
Query 360 TGTTCCTGCTACTTTGAAGAAGTCAGCTAAGCCTGGTGGTCGTCCATTTGGTGGCCCACC 419
||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||
Sbjct 353 TGTTCCTGCTACTTTGAAGAAGTCAGCTAAGCCTGTTGGTCGTTCATTTGGTGGTCCACC 412
Query 420 TGGTGATCGCTCAAGAGGACCTCGCCATGAAGGAGGAGACCGTCCCAGGTTTGGTGACCG 479
||||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||||
Sbjct 413 TGGTGATCGCTCAAGGGGACCTCGTCATGAAGGAGGAGACCGTCCCAGGTATGCTGACCG 472
Query 480 TGATGGGTACCGTGCAGGTCCTCGAGCTGGTGGTGAGTTTGGAGGTGAAAAGGGTGGAGC 539
||||| |||||||| ||||||||| | ||||||||||||||| |||||||||||||||||
Sbjct 473 TGATGCGTACCGTGGAGGTCCTCGTGGTGGTGGTGAGTTTGGGGGTGAAAAGGGTGGAGC 532
Query 540 TCCCGCAGATTACCAGCCATCTTTCCAAGGAAGTGGCCGTGGTTTTGGCCGTGGTGCTGG 599
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TCCAGCAGATTACCAGCCATCTTTCCAAGGAAGTGGCCGTGGTTTTGGCCGTGGTGCTGG 592
Query 600 TGGCTACAGCGCAGCTGCACCATCTGGTTCAGGTTTGCCTTGAAAAAGAAATGTCTTTAG 659
||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 593 TGGTTACAGCGCGGCTGCACCATCTGGTTCAGGTTTGCCTTGAAAG-GAAATGTCTTTAG 651
Query 660 GTGACAGTAAGACCATGGA---GGAG---TT-TT-CAGCTTTAAATTTTGCTTT 705
|||||||||||||||||| |||| || || ||||||||| |||| ||||
Sbjct 652 TTGACAGTAAGACCATGGACATGGAGGAGTTGTTTCAGCTTTAAGTTTTACTTT 705
Score = 84.2 bits (45), Expect = 1e-15
Identities = 51/54 (94%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 737 TCTATCTGAGTTTAGTTTTGTTGTTGAATCAAACATCCGATTTAAAGTTATGTT 790
|||||||||||||||||||||||||||| ||||||||| |||| ||||||||||
Sbjct 705 TCTATCTGAGTTTAGTTTTGTTGTTGAAGCAAACATCCAATTTTAAGTTATGTT 758
> Ahg492247 jgi|Araly1|492247|fgenesh2_kg.7__1680__AT4G25740.2
Length=605
Score = 407 bits (220), Expect = 7e-113
Identities = 290/324 (90%), Gaps = 4/324 (1%)
Strand=Plus/Plus
Query 103 ATGATTATCTCAGAG-GCTAACCGCAAAGAAATCTGCAAGTACCTCTTCAAAGAAGGAGT 161
||||||||||||||| | || |||| ||| |||||||| ||||| |||||||| |||||
Sbjct 65 ATGATTATCTCAGAGAAC-AATCGCAGAGAGATCTGCAAATACCTTTTCAAAGAGGGAGT 123
Query 162 TTGCTTTGCGAAGAAGGATTTCAATCTTGCTAAGCATCCGTTGATCGATGTCCCCAACCT 221
|||||||| ||||||||||||||||| || |||||||| ||||| ||||| || |||||
Sbjct 124 ATGCTTTGCTAAGAAGGATTTCAATCTCGCGAAGCATCCTTTGATTGATGTACCAAACCT 183
Query 222 ACAAGTGATTAAGCTTATGCAGAGTTTCAAATCCAAGGAGTATGTTAGGGAGACATTTGC 281
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 184 GCAAGTGATTAAGCTCATGCAGAGTTTCAAGTCCAAGGAGTATGTTAGGGAGACATTTGC 243
Query 282 CTGGATGCATTACTATTGGTTTTTGACCAATGAAGGGATCGAGTTCTTGAGAACTTATCT 341
||||||||||| ||||||||| |||| ||||||||||| ||||||||||||||||||||
Sbjct 244 GTGGATGCATTATTATTGGTTTCTGACTAATGAAGGGATTGAGTTCTTGAGAACTTATCT 303
Query 342 TAATCTTCCATCTGATGTTGTTCCTGCTACTTTGAAGAAGTCAGCTAAGCCTGGTGGTCG 401
||| ||||| || ||||||||||||||||||||||||||||| |||||||||| ||| ||
Sbjct 304 TAACCTTCCTTCCGATGTTGTTCCTGCTACTTTGAAGAAGTCTGCTAAGCCTGTTGGCCG 363
Query 402 T-CCATTTGGTGGCCCACCTGGTG 424
| || ||||||||||||| |||||
Sbjct 364 TTCC-TTTGGTGGCCCACATGGTG 386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32137619031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5