BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52660.2
Length=1483
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916896 jgi|Araly1|916896|Al_scaffold_0008_1647 1541 0.0
> Ahg916896 jgi|Araly1|916896|Al_scaffold_0008_1647
Length=966
Score = 1541 bits (834), Expect = 0.0
Identities = 916/954 (96%), Gaps = 12/954 (1%)
Strand=Plus/Plus
Query 138 TTCTGACGGATATTTCTTGGATCCGACCGGTATGACTGTTCCTGGTCTCGGACCTTCCTT 197
||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 24 TTCCGACGGATATTTCTTGGATCCGACGGGTATGAATGTTCCTGGTCTCGGACCTTCCTT 83
Query 198 TACAGCCGCCGTTTCTTCTTCTTCTTCACCAACGACTTCTTCTACGGCCGTGGCTGTGGC 257
||| ||||||| | |||||||||||| |||||||||||||| |||||| ||||| |
Sbjct 84 TACCGCCGCCG-----T-TTCTTCTTCACCGACGACTTCTTCTACCGCCGTGACTGTGAC 137
Query 258 GGATGTGACGGCGATGGTTTCTTCTTCGGAGGAGGATTTGAGTAAGAAGATTAGGAAGCC 317
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 138 GGATGCGACGGCGATGGTTTCTTCGTCGGAGGAGGATTTGAGTAAGAAGATTAGGAAGCC 197
Query 318 TTATACTATTACTAAGTCTAGAGAGAGCTGGACGGAGCCTGAGCATGATAAATTCCTTGA 377
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 198 TTATACTATTACTAAGTCTAGAGAGAGCTGGACTGAGCCTGAGCATGATAAATTCCTTGA 257
Query 378 AGCTCTTCAATTGTTTGATAGAGACTGGAAGAAGATTGAAGCTTTTATTGGTTCAAAGAC 437
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 258 AGCTCTTCAATTGTTTGATAGAGACTGGAAGAAGATTGAAGCTTTTATTGGGTCAAAGAC 317
Query 438 AGTGATTCAGATACGAAGTCATGCTCAGAAGTATTTTCTTAAGGTACAAAAGAGTGGGAC 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 AGTGATTCAGATACGAAGTCATGCTCAGAAGTATTTTCTTAAGGTACAAAAGAGTGGGAC 377
Query 498 CGGTGAACATCTCCCTCCTCCTCGACCTAAAAGGAAAGCCGCTCATCCATATCCTCAGAA 557
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 GGGTGAACATCTCCCTCCTCCTCGACCTAAAAGGAAAGCCGCTCATCCATATCCTCAGAA 437
Query 558 GGCTCACAAGAATGTGCAA-CTGCAAGTACCAGGGTCATTCAAGTCAACATCTGAACCAA 616
||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 438 GGCTCACAAGAATGTGCAACCT-CAAGTACCGGGGTCATTCAAGTCAACATCTGAACCAA 496
Query 617 ATGACCCAAGTTTTATGTTTAGGCCTGAGTCTTCTTCAATGCTGATGACTTCGCCAACCA 676
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 497 ATGACCCAAGTTTTATGTTTAGGCCCGAGTCTTCTTCAATGCTGATGACTTCTCCAACCA 556
Query 677 CTGCTGCTGCGGCTCCATGGACAAATAATGCGCAAACAATTAGCTTCACTCCCCTCCCAA 736
||||||| | | |||||||||||||||| ||||||||||||||||||| ||| ||||||
Sbjct 557 CTGCTGC--C-GATCCATGGACAAATAATACGCAAACAATTAGCTTCACACCCGTCCCAA 613
Query 737 AAGCAGGAGCAGGAGCTAATAACAATTGTTCTAGTAGTTCTGAAAATACTCCAAGACCAC 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 614 AAGCAGGAGCAGGAGCTAATAACAATTGTTCTAGTAGTTCTGAAAATACTCCAAGGCCAC 673
Query 797 GATCCAACAGGGACGCAAGAGACCATGGAAATGTTGGCCATTCATTAAGAGTTTTACCGG 856
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 674 GATCCAACAGGGACGCAAGTGACCAGGGAAATGTTGGCCATTCATTAAGAGTTTTACCGG 733
Query 857 ACTTTGCCCAAGTATACGGCTTCATTGGAAGTGTGTTTGACCCATATGCAAGTAATCATC 916
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 734 ACTTTGCCCAAGTATACGGCTTCATTGGAAGTGTTTTTGACCCATATGCAAGTAATCATC 793
Query 917 TACAAAAGCTGAAGAAGATGGACCCCATAGATGTTGAAACAGTGTTACTATTGATGAGAA 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 TACAAAAGCTGAAGAAGATGGACCCCATAGATGTTGAAACAGTGTTACTATTGATGAGAA 853
Query 977 ATCTATCCATCAACTTGTCTAGTCCTGACTTTGAGGATCATAGACGGCTTCTTTCGTCTT 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 ATCTATCCATCAACTTGTCTAGTCCTGACTTTGAGGATCATAGACGGCTTCTTTCGTCTT 913
Query 1037 ATGATATCGGATCTGAGACAGCAACTGATCATGGTGGAGTGAATAAAACCTTAA 1090
|||||||||||||||||||||||||||||| || ||||||||||||| ||||||
Sbjct 914 ATGATATCGGATCTGAGACAGCAACTGATCGTGATGGAGTGAATAAA-CCTTAA 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55497486965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5