BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G52670.1

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg495338 jgi|Araly1|495338|fgenesh2_kg.8__1154__AT5G52670.1         577    3e-164


> Ahg495338 jgi|Araly1|495338|fgenesh2_kg.8__1154__AT5G52670.1
Length=357

 Score =  577 bits (312),  Expect = 3e-164
 Identities = 343/358 (96%), Gaps = 2/358 (1%)
 Strand=Plus/Plus

Query  44   CAATCATCAAACTTTCTATACTTTCCGAAAATGCCGGAGAAAGTTGTATTCAAGTTGGAA  103
            |||||||||| ||||||||| ||| ||||||||||||||||||| ||||||||| |||||
Sbjct  1    CAATCATCAAGCTTTCTATATTTTTCGAAAATGCCGGAGAAAGTGGTATTCAAGCTGGAA  60

Query  104  GTTTTTGAGGAAAGAATCAAACGAAGAGCTATGAAAGTTGTATGTGACTTTCCAGGAGTT  163
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  61   GTTTTTGAGGAAAGAATCAAACGGAGAGCTATGAAAGTTGTATGTGACTTTCCAGGAGTT  120

Query  164  ACTTTGATAGACGTGAAGGAAAAAGGTAAACTAAAGGTGAATGGAGAATTTGATAAGTTT  223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ACTTTGATAGACGTGAAGGAAAAAGGTAAACTAAAGGTGAATGGAGAATTTGATAAGTTT  180

Query  224  GAAATGACGAAGAAACTTAAGAAGGTGTATGAATTTGTTGACATTATCGCGGTTGGGCCG  283
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct  181  GAAATGACGAAGAAACTTAAGAAGGTATATGAATTTGTTGACATTATCGCGGTTGGACCG  240

Query  284  GATGGAGAACCGGC-ACAAAATCAGAAGCTGGTTAAAAAGCCTGAACCTAAAGTGAAGAA  342
            ||||||||||| || | ||||||||||||||||||||||||||||||| |||||||||||
Sbjct  241  GATGGAGAACCAGCGA-AAAATCAGAAGCTGGTTAAAAAGCCTGAACCAAAAGTGAAGAA  299

Query  343  AGCACCATCTTACCGTGGTTGGAATTTGGGTTTCTTTAAGTGATCAATTTGAAGACGT  400
            ||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||
Sbjct  300  AGCACCATCTTACCGTGGTTGGAATTTGGGTTTCTTTAAGTAATCGATTTGAAGTCGT  357



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16368747681


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5