BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G52740.1

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg916900 jgi|Araly1|916900|Al_scaffold_0008_1651                    532    5e-151


> Ahg916900 jgi|Araly1|916900|Al_scaffold_0008_1651
Length=357

 Score =  532 bits (288),  Expect = 5e-151
 Identities = 334/357 (94%), Gaps = 0/357 (0%)
 Strand=Plus/Plus

Query  1    ATGCAGGTAGTTGTACTGAAATTAGATGTTCATTGTGaaaaaaccaaacaaaaaGCTATG  60
            |||||||||||| | |||||||| |||||||||||||||| ||||||| |||||||||||
Sbjct  1    ATGCAGGTAGTTATGCTGAAATTGGATGTTCATTGTGAAAGAACCAAAAAAAAAGCTATG  60

Query  61   TCAACTGTATGTTGTCTCTCAGGAGTTAACTCGGTGGAGGTGAAAGATGGTAAACTAACG  120
            ||||| ||||||||||||||||||||||| |||||||| ||||| || ||||||||||| 
Sbjct  61   TCAACCGTATGTTGTCTCTCAGGAGTTAATTCGGTGGACGTGAACGACGGTAAACTAACA  120

Query  121  GTGACGGGAGAGATTGATGCCTATATGATTGTGAAGAAATTGAAGAAGATATGTCATACC  180
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GTGACCGGAGAGATTGATGCCTATATGATTGTGAAGAAATTGAAGAAGATATGTCATACC  180

Query  181  GAGTTTATATCGGTTGGACCGGTTAAAGAACCAGAGAAGAAGAAGCCTGATGATCCGAAG  240
            |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  181  GAGTTTATCTCGGTTGGACCGGTTAAAGAACCAGAGAAAAAGAAGCCTGATGATCCGAAG  240

Query  241  AAGCCTGAAACGAAGCCACCAGATGTCATTTATCATTATGTCCCTCCATGTCCACCTTAT  300
            ||||||||||| |||||||||||||| |||||| ||| ||||||||||| ||||||||||
Sbjct  241  AAGCCTGAAACAAAGCCACCAGATGTGATTTATAATTGTGTCCCTCCATATCCACCTTAT  300

Query  301  TACCATAATTTCAACGGATGTTACAATGAAGATCCCAACGCTTGCGTCACCTCTTGA  357
            |||||| ||||||||||||||||||||||||||||| | |||||||||| |||||||
Sbjct  301  TACCATCATTTCAACGGATGTTACAATGAAGATCCCTATGCTTGCGTCATCTCTTGA  357



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12705811137


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5