BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52750.1
Length=640
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495340 jgi|Araly1|495340|fgenesh2_kg.8__1156__AT5G52750.1 928 0.0
Ahg357513 jgi|Araly1|357513|fgenesh1_pg.C_scaffold_8001300 368 3e-101
> Ahg495340 jgi|Araly1|495340|fgenesh2_kg.8__1156__AT5G52750.1
Length=579
Score = 928 bits (502), Expect = 0.0
Identities = 557/583 (96%), Gaps = 6/583 (1%)
Strand=Plus/Plus
Query 29 tctctctctttctctTAAGAATATTGGAAATTTCTGAAGCTTTTCTATAGTTGATCTCGA 88
||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1 TCTCTCTCTCTCTCTTAAGAATATCGGAAATTTCTGAAGCTTTGCTATAGTTGATCTCGA 60
Query 89 GCCATGCCTCCAATGAAAGCTGTGTTGCAATTGAGCATTCACGAGGAAAGAATCAGGAAG 148
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GCCATGCCTCCGATGAAAGCTGTGTTGCAATTGAGCATTCACGAAGAAAGAATCAGGAAG 120
Query 149 AAAGCGTTTGTCACCGTTTCTCGATGTCCAGGTGTTACTTCGATAACAATGGATGACAAA 208
||||||||||| || |||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 121 AAAGCGTTTGTTACTGTTTCTAGATGTCCAGGTGTTACTTCGATAACAATTGATGACAAA 180
Query 209 ACCGGGAAAATGACAGTAGTTGGTGAAGTTGATGTACCGGTTATCGTGATGAAGCTAAGG 268
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACCGGGAAAATGACTGTAGTTGGTGAAGTTGATGTACCGGTTATCGTGATGAAGCTAAGG 240
Query 269 AAGCTATGTAACACAGAGCTTGTTTCGGTTGAAGTTGTTAAACCACCTGAGAAAAAGCCT 328
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGCTATGTAACACAGAGATTGTTTCGGTTGAAGTTGTTAAACCACCTGAGAAAAAGCCT 300
Query 329 GAACCAGAGAAACCGGCTCCACCTAAACCAGCTCCAGCTCCAGCTAAACCGGCTGAAATT 388
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 GAACCGGAGAAACCGGCTCCACCTAAACCAGCTCCAGCTCCAGCTAAACCGGGTGAAATT 360
Query 389 GTTGCCTGGCCGGTTCAGATGAACAACCCTTACCAATACAATCCTGCCTATGCAAATTCT 448
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 361 GTTGCCTGGCCGGTTCAGATGAACAACCCTTACCAATACCATCCTGCCTATGCAAATTCT 420
Query 449 TACTATCAACCATATGGGAACTCTAGATTTGTAACGGACGAATCAAATTGTGTGATTATG 508
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 421 TACTATCAACCATACGGAAATTCTAGATTTGTAACGGACGAATCAAATTGTGTGATTATG 480
Query 509 TGATAACTTATTTCAAATAATGTGTTAAGTTAGTTTTGATGGAAGAGTGTAATTTTTT-A 567
|||| |||||||||||||||| | |||||||||||||||||||| ||||||||||| |
Sbjct 481 TGAT---TTATTTCAAATAATGT-T-AAGTTAGTTTTGATGGAAGAATGTAATTTTTTGA 535
Query 568 GCTACTGTAATATACATTTCTCATATGAGCTTATTCAGAAAAA 610
|||||||||||||||||||||||||||||||||| | ||||||
Sbjct 536 GCTACTGTAATATACATTTCTCATATGAGCTTATCCGGAAAAA 578
> Ahg357513 jgi|Araly1|357513|fgenesh1_pg.C_scaffold_8001300
Length=384
Score = 368 bits (199), Expect = 3e-101
Identities = 313/365 (86%), Gaps = 20/365 (5%)
Strand=Plus/Plus
Query 103 GAAAGCTGTGTTGCAATTGAGCATTCACGAGGA-AAGAATCAGGAAGAAAGCGTTTGTCA 161
|||||||||||||||||| || ||||||||||| || |||||||| ||||| |||||| |
Sbjct 12 GAAAGCTGTGTTGCAATTAAGTATTCACGAGGAGAA-AATCAGGACGAAAGTGTTTGTGA 70
Query 162 CCGTTTCTCGATGTCCAGGTGTTACTTCGATAACAATGGATGACAAAACCGGGAAAATGA 221
||||| || ||| | ||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 71 CCGTTGCTGGATTTACAGGTGTTACTTCGATAACTATGGATGACAAAACCGGGAAACTGA 130
Query 222 CAGTAGTTGGTGAAGTTGATGTACCGGTTATCGTGATGAAGCTAAGGAAGCTATGTAACA 281
| ||||| || ||| ||||||| || |||||||||||||||||||||||||||||||||
Sbjct 131 CGGTAGTGGGAGAAATTGATGTGCCAATTATCGTGATGAAGCTAAGGAAGCTATGTAACA 190
Query 282 CAGAGCTTGTTTCGGTTGAAGTTGTTAAACCACCTGAGAAAAAGCCTGAACCAGAGAAAC 341
||||| ||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 191 CAGAGATTGTTTCTGTTGAAGTAGTTAAACCACCTGAGAAAAAGCCTGAACCGGAGAAAC 250
Query 342 CGGCTCCACCTAAACCAGCTCCAGCTCCAGCTAAACCGGCTGAAATTGTTGCCTGGCCGG 401
||||||||||||||||||||||| | | ||||||| |||||| | |||| |||
Sbjct 251 CGGCTCCACCTAAACCAGCTCCA-C-C----TAAACCGACTGAAAATATTGC--GGC--- 299
Query 402 TTCAGATGAACAACCCTTACCAATACAATCCTGCCTATGCA-A-----ATTCTTACTATC 455
| | |||||| ||| |||||||||||||||||||||| | ||||||||||||
Sbjct 300 TCC-GATGAATTACCAGAACCAATACAATCCTGCCTATGCCTATCCTGATTCTTACTATC 358
Query 456 AACCA 460
|||||
Sbjct 359 AACCA 363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23445593955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5