BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52760.1
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331636 jgi|Araly1|331636|fgenesh1_pm.C_scaffold_8000979 448 3e-125
Ahg495340 jgi|Araly1|495340|fgenesh2_kg.8__1156__AT5G52750.1 279 1e-74
Ahg357513 jgi|Araly1|357513|fgenesh1_pg.C_scaffold_8001300 257 6e-68
> Ahg331636 jgi|Araly1|331636|fgenesh1_pm.C_scaffold_8000979
Length=399
Score = 448 bits (242), Expect = 3e-125
Identities = 348/396 (88%), Gaps = 19/396 (5%)
Strand=Plus/Plus
Query 98 GACCGCAAAGAACGCTGTGTTGCAATTGAGTATTCACGAGGAGAGAACCAGGAAGAAAGC 157
|||||| ||||| |||||||||||||| |||||||||||||||| || ||||||||||||
Sbjct 6 GACCGCGAAGAAAGCTGTGTTGCAATTAAGTATTCACGAGGAGAAAATCAGGAAGAAAGC 65
Query 158 GCTTGTCACCGTTTCTCGATTTTCAGGAGTTACTTCGATAACAAT-G--GACAAAAGTGG 214
||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||
Sbjct 66 GCTTGTCACCGTTTCTCGATTTTCAGGGGTTACTTCGATAACAATAGATGACAAAAGTGG 125
Query 215 GAAAATGACAATAGTTGGAGAAGTTGATGTACCAGCTGTCGTGATGAAGCTAAGGAAGCT 274
||||||||| |||||||||||||||||||||| | | ||||||| ||||| ||||||||
Sbjct 126 GAAAATGACGGTAGTTGGAGAAGTTGATGTACCGGTTATCGTGATCAAGCTGAGGAAGCT 185
Query 275 ATGTAACACAGAGATCGTTTCAGTCGATGATGTTAAACCACCTGTTAAAAAGCCTGAACC 334
|||| ||||||| |||||||| || ||||||||||||||||||| ||||||| ||||||
Sbjct 186 ATGTCACACAGATATCGTTTCGGTAGATGATGTTAAACCACCTGAGAAAAAGCTTGAACC 245
Query 335 TGAGAAACCAGCTGAATCTATT--G-C--A-T--ATC-C-TGTTCCGATGAACTACGCGT 384
|||||||||||| | |||| | | | | || | | | ||||||||||||||||
Sbjct 246 GGAGAAACCAGCTCCACCTATACCGGCTGAATTTATTACATAT-CCGATGAACTACGCGT 304
Query 385 ACCAAT-TCAATCCT---GCCTATGCAAATTCTTACTATCATCAACCATACGGAAATTGT 440
|||||| | |||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 305 ACCAATAT-AATCCTCATGCCTATGCAAATTCTTACTATCATCAACCATACGGGAATTGT 363
Query 441 AGAGTGGTAGACGAACCAAATTGTGTGATTATGTGA 476
||||| ||||||||||||||||||||||||||||||
Sbjct 364 AGAGTAGTAGACGAACCAAATTGTGTGATTATGTGA 399
> Ahg495340 jgi|Araly1|495340|fgenesh2_kg.8__1156__AT5G52750.1
Length=579
Score = 279 bits (151), Expect = 1e-74
Identities = 228/265 (86%), Gaps = 5/265 (2%)
Strand=Plus/Plus
Query 87 TCTCGAGCCATGACC-GCAAAGAACGCTGTGTTGCAATTGAGTATTCACGAGGAGAGAAC 145
|||||||||||| || | | ||| ||||||||||||||||| |||||||| || ||||
Sbjct 55 TCTCGAGCCATG-CCTCCGATGAAAGCTGTGTTGCAATTGAGCATTCACGAAGAAAGAAT 113
Query 146 CAGGAAGAAAGCGCTTGTCACCGTTTCTCGATTTTCAGGAGTTACTTCGATAACAA-TG- 203
||||||||||||| |||| || |||||| ||| | |||| |||||||||||||||| ||
Sbjct 114 CAGGAAGAAAGCGTTTGTTACTGTTTCTAGATGTCCAGGTGTTACTTCGATAACAATTGA 173
Query 204 -GACAAAAGTGGGAAAATGACAATAGTTGGAGAAGTTGATGTACCAGCTGTCGTGATGAA 262
||||||| ||||||||||| ||||||| |||||||||||||| | | ||||||||||
Sbjct 174 TGACAAAACCGGGAAAATGACTGTAGTTGGTGAAGTTGATGTACCGGTTATCGTGATGAA 233
Query 263 GCTAAGGAAGCTATGTAACACAGAGATCGTTTCAGTCGATGATGTTAAACCACCTGTTAA 322
||||||||||||||||||||||||||| ||||| || || | |||||||||||||| ||
Sbjct 234 GCTAAGGAAGCTATGTAACACAGAGATTGTTTCGGTTGAAGTTGTTAAACCACCTGAGAA 293
Query 323 AAAGCCTGAACCTGAGAAACCAGCT 347
|||||||||||| |||||||| |||
Sbjct 294 AAAGCCTGAACCGGAGAAACCGGCT 318
Score = 121 bits (65), Expect = 8e-27
Identities = 100/116 (86%), Gaps = 6/116 (5%)
Strand=Plus/Plus
Query 366 GTTCCGATGAACTACGCGTACCAATTCAATCCTGCCTATGCAAATTCTTACTATCATCAA 425
|||| ||||||| || | ||||||| | |||||||||||||||||||||||||||| |
Sbjct 373 GTTCAGATGAACAACCCTTACCAATACCATCCTGCCTATGCAAATTCTTACTATCA--A- 429
Query 426 CCATACGGAAATTGTAGAGTGGTA--G-ACGAACCAAATTGTGTGATTATGTGATT 478
||||||||||||| |||| | ||| | ||||| ||||||||||||||||||||||
Sbjct 430 CCATACGGAAATTCTAGATTTGTAACGGACGAATCAAATTGTGTGATTATGTGATT 485
> Ahg357513 jgi|Araly1|357513|fgenesh1_pg.C_scaffold_8001300
Length=384
Score = 257 bits (139), Expect = 6e-68
Identities = 218/256 (85%), Gaps = 5/256 (2%)
Strand=Plus/Plus
Query 96 ATGACCGCAAAGAACGCTGTGTTGCAATTGAGTATTCACGAGGAGAGAACCAGGAAGAAA 155
|||||||| ||||| |||||||||||||| |||||||||||||||| || ||||| ||||
Sbjct 1 ATGACCGCGAAGAAAGCTGTGTTGCAATTAAGTATTCACGAGGAGAAAATCAGGACGAAA 60
Query 156 GCGCTTGTCACCGTTTCTCGATTTTCAGGAGTTACTTCGATAACAAT-G--GACAAAAGT 212
| | |||| |||||| || ||||| |||| |||||||||||||| || | |||||||
Sbjct 61 GTGTTTGTGACCGTTGCTGGATTTACAGGTGTTACTTCGATAACTATGGATGACAAAACC 120
Query 213 GGGAAAATGACAATAGTTGGAGAAGTTGATGTACCAGCTGTCGTGATGAAGCTAAGGAAG 272
|||||| |||| |||| |||||| ||||||| ||| | ||||||||||||||||||||
Sbjct 121 GGGAAACTGACGGTAGTGGGAGAAATTGATGTGCCAATTATCGTGATGAAGCTAAGGAAG 180
Query 273 CTATGTAACACAGAGATCGTTTCAGTCGATG-ATGTTAAACCACCTGTTAAAAAGCCTGA 331
||||||||||||||||| ||||| || || | | ||||||||||||| |||||||||||
Sbjct 181 CTATGTAACACAGAGATTGTTTCTGTTGAAGTA-GTTAAACCACCTGAGAAAAAGCCTGA 239
Query 332 ACCTGAGAAACCAGCT 347
||| |||||||| |||
Sbjct 240 ACCGGAGAAACCGGCT 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23407471038
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5