BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52770.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
Ahg357513 jgi|Araly1|357513|fgenesh1_pg.C_scaffold_8001300 383 5e-106
Ahg495340 jgi|Araly1|495340|fgenesh2_kg.8__1156__AT5G52750.1 292 8e-79
Ahg331636 jgi|Araly1|331636|fgenesh1_pm.C_scaffold_8000979 285 1e-76
> Ahg357513 jgi|Araly1|357513|fgenesh1_pg.C_scaffold_8001300
Length=384
Score = 383 bits (207), Expect = 5e-106
Identities = 295/335 (88%), Gaps = 15/335 (4%)
Strand=Plus/Plus
Query 6 AGAAAGCTGTGTTGCAATTGGGTATCCCCGAGGAGAAAATCAGAATGAAAGT-TTTGTGA 64
||||||||||||||||||| |||| | ||||||||||||||| | |||||| |||||||
Sbjct 11 AGAAAGCTGTGTTGCAATTAAGTATTCACGAGGAGAAAATCAGGACGAAAGTGTTTGTGA 70
Query 65 CCGTTGCAGGATTTACAGGTGTTACTTCGATAACAATAGATGACAAAACCGGGAAACTGA 124
||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 71 CCGTTGCTGGATTTACAGGTGTTACTTCGATAACTATGGATGACAAAACCGGGAAACTGA 130
Query 125 CGGTAGTGGGAGACATTGATGTACCAATTATCGTGATGAAGCTAAGGAAGCTATGTAAGA 184
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 131 CGGTAGTGGGAGAAATTGATGTGCCAATTATCGTGATGAAGCTAAGGAAGCTATGTAACA 190
Query 185 CAGAGATTATTTCGGTAGATGCT-GTTAAACCACCTGAGAAAAAGCCTGAACCGGAGAAA 243
|||||||| |||| || || | | ||||||||||||||||||||||||||||||||||||
Sbjct 191 CAGAGATTGTTTCTGTTGAAG-TAGTTAAACCACCTGAGAAAAAGCCTGAACCGGAGAAA 249
Query 244 CCGGCTCCACCTAAACCGAG-TG-A---AAA--GATTGCA--TCTC-CGGTTCCGATGAA 293
||||||||||||||||| || | | ||| || || | | | ||| |||||||||
Sbjct 250 CCGGCTCCACCTAAACC-AGCTCCACCTAAACCGACTGAAAATATTGCGGCTCCGATGAA 308
Query 294 CTTAGCAGAACGAGTACAATCCTGCCTATGCCTAT 328
||| |||||| | |||||||||||||||||||||
Sbjct 309 -TTACCAGAACCAATACAATCCTGCCTATGCCTAT 342
> Ahg495340 jgi|Araly1|495340|fgenesh2_kg.8__1156__AT5G52750.1
Length=579
Score = 292 bits (158), Expect = 8e-79
Identities = 227/259 (88%), Gaps = 9/259 (3%)
Strand=Plus/Plus
Query 7 GAAAGCTGTGTTGCAATTGGGTATCCCCGAGGAGAA-AATCA-GAATGAAAG-TTTTGTG 63
||||||||||||||||||| | || | ||| || || ||||| ||| ||||| |||||
Sbjct 75 GAAAGCTGTGTTGCAATTGAGCATTCACGAAGA-AAGAATCAGGAA-GAAAGCGTTTGTT 132
Query 64 ACCGTTGC-AGGATTTACAGGTGTTACTTCGATAACAATAGATGACAAAACCGGGAAACT 122
|| ||| | | ||| | |||||||||||||||||||||| |||||||||||||||||| |
Sbjct 133 ACTGTTTCTA-GATGTCCAGGTGTTACTTCGATAACAATTGATGACAAAACCGGGAAAAT 191
Query 123 GACGGTAGTGGGAGACA-TTGATGTACCAATTATCGTGATGAAGCTAAGGAAGCTATGTA 181
||| ||||| || || | |||||||||| ||||||||||||||||||||||||||||||
Sbjct 192 GACTGTAGTTGGTGA-AGTTGATGTACCGGTTATCGTGATGAAGCTAAGGAAGCTATGTA 250
Query 182 AGACAGAGATTATTTCGGTAGATGCTGTTAAACCACCTGAGAAAAAGCCTGAACCGGAGA 241
| ||||||||| ||||||| || | |||||||||||||||||||||||||||||||||||
Sbjct 251 ACACAGAGATTGTTTCGGTTGAAGTTGTTAAACCACCTGAGAAAAAGCCTGAACCGGAGA 310
Query 242 AACCGGCTCCACCTAAACC 260
|||||||||||||||||||
Sbjct 311 AACCGGCTCCACCTAAACC 329
> Ahg331636 jgi|Araly1|331636|fgenesh1_pm.C_scaffold_8000979
Length=399
Score = 285 bits (154), Expect = 1e-76
Identities = 225/259 (87%), Gaps = 5/259 (2%)
Strand=Plus/Plus
Query 6 AGAAAGCTGTGTTGCAATTGGGTATCCCCGAGGAGAAAATCA-GAATGAAAG-TTTTGTG 63
||||||||||||||||||| |||| | |||||||||||||| ||| ||||| ||||
Sbjct 14 AGAAAGCTGTGTTGCAATTAAGTATTCACGAGGAGAAAATCAGGAA-GAAAGCGCTTGTC 72
Query 64 ACCGTTGCAGGATTTACAGGTGTTACTTCGATAACAATAGATGACAAAACCGGGAAACTG 123
|||||| | ||||| |||| |||||||||||||||||||||||||||| |||||| ||
Sbjct 73 ACCGTTTCTCGATTTTCAGGGGTTACTTCGATAACAATAGATGACAAAAGTGGGAAAATG 132
Query 124 ACGGTAGTGGGAGACA-TTGATGTACCAATTATCGTGATGAAGCTAAGGAAGCTATGTAA 182
|||||||| ||||| | |||||||||| |||||||||| ||||| |||||||||||| |
Sbjct 133 ACGGTAGTTGGAGA-AGTTGATGTACCGGTTATCGTGATCAAGCTGAGGAAGCTATGTCA 191
Query 183 GACAGAGATTATTTCGGTAGATGCTGTTAAACCACCTGAGAAAAAGCCTGAACCGGAGAA 242
||||| || |||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 192 CACAGATATCGTTTCGGTAGATGATGTTAAACCACCTGAGAAAAAGCTTGAACCGGAGAA 251
Query 243 ACCGGCTCCACCTAAACCG 261
||| |||||||||| ||||
Sbjct 252 ACCAGCTCCACCTATACCG 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11904543768
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5