BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52780.1
Length=602
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495341 jgi|Araly1|495341|fgenesh2_kg.8__1157__AT5G52780.1 680 0.0
> Ahg495341 jgi|Araly1|495341|fgenesh2_kg.8__1157__AT5G52780.1
Length=500
Score = 680 bits (368), Expect = 0.0
Identities = 459/502 (91%), Gaps = 10/502 (2%)
Strand=Plus/Plus
Query 26 ATGAGAGCTCTCTTGTGCTCACACCGTTTACTACCATTATCATCTCTCTCAAGAACAAC- 84
|||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||
Sbjct 1 ATGAGAGCTCTCTTGTGCTCTCACCATTTACTACCATTATCATCTTTCTCAAGAACAACT 60
Query 85 CGTCAAAACCAAATC-TCACAATCCAAAAACCCT-ATATCCTAACAACAAACCAAGATGG 142
| ||||||||||| | ||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 61 C-TCAAAACCAAA-CTTCAAAATCCAAAAACCCTAAT-TCCTAACAACAAACCAAGATGG 117
Query 143 GAATCCAAGCTCCACGCTGGACCTAAAGGGTTTCAATCTTCTAGAACCTCTGAAAAACCC 202
||||||||||||||||| ||||| || |||||||||||| ||| || ||||| |||||||
Sbjct 118 GAATCCAAGCTCCACGCAGGACCCAAGGGGTTTCAATCTACTAAAAGCTCTG-AAAACCC 176
Query 203 -GGCCGGCCAGACCCGGACCCGGAAGACGATCCC-CCGATACCTCAAGAAGTGTTCGAGA 260
|||||||| ||||||| |||||||||||| ||| || |||||||||||||||||||||
Sbjct 177 GGGCCGGCCTGACCCGGGCCCGGAAGACGA-CCCGCCAATACCTCAAGAAGTGTTCGAGC 235
Query 261 GGATGATGGGGAGGATTGTGGTGTCTGTGGGAACACCACTGGGCTTGGGAGTGGCGATCT 320
|||||||||| ||||| || ||||| || ||||||||||| ||| | |||||||| ||||
Sbjct 236 GGATGATGGGAAGGATCGTCGTGTCGGTAGGAACACCACTAGGCCTAGGAGTGGCAATCT 295
Query 321 TGAAAGTACTCGAAGTTTTGAAGGATAGAAACGTCTGGGACGTGCCTTTGTGGGTTCCAT 380
||||| |||||||||| ||||||||||| ||| ||||||||||||| |||||||||||||
Sbjct 296 TGAAAATACTCGAAGTCTTGAAGGATAGGAACCTCTGGGACGTGCCGTTGTGGGTTCCAT 355
Query 381 ACTTGACCACACTCGTGACCTTTGGTTCGTCGGCTCTTGGGATTGCGTACGGAAGCTTGT 440
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 356 TCTTGACCACACTCGTGACCTTTGGTTCGTCGGCTCTTGGGATTGCTTACGGAAGCTTGT 415
Query 441 CCACAAACCTGGACCCGGCCAAGACTAACTCTCTTTTTGGACTCAAAGAGGCAAAGGAGA 500
|||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 416 CCACAAACTTGGACCCGACCAAGACTAACTCTCTTTTCGGACTCAAAGAGGCAAAGGAGA 475
Query 501 ATTGGGTAGAGATGTGGAAAGA 522
||||||||||||||||||||||
Sbjct 476 ATTGGGTAGAGATGTGGAAAGA 497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22053930442
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5