BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52790.1
Length=1558
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495342 jgi|Araly1|495342|fgenesh2_kg.8__1158__AT5G52790.1 2254 0.0
> Ahg495342 jgi|Araly1|495342|fgenesh2_kg.8__1158__AT5G52790.1
Length=1540
Score = 2254 bits (1220), Expect = 0.0
Identities = 1444/1551 (93%), Gaps = 19/1551 (1%)
Strand=Plus/Plus
Query 1 CTTTAGTCTCTACCTTCTAAATTACTTAAGAAATGGCTGCAAATGATGTCCCTTGCTGTG 60
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 CTTTAGTCTTTACCTTCTAAATTACTTAAGAAATGGCTGCAGATGATGTCCCTTGCTGTG 60
Query 61 AGACTATGTTCTGGGTGTACCTACTCGTATGTGTTGCTCTAGTGG-TTTTCGCAGGTTTG 119
||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||
Sbjct 61 CGACTATGTTCTGGGTGTACCTACTCGTATGTGTTGCTCTTGTGGCTTTT-GCAGGTTTG 119
Query 120 ATGTCAGGACTGACTCTTGGGCTCATGTCCCTTAGTATTGTCGAGCTCGAGGTCATGATC 179
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 120 ATGTCAGGACTGACTCTTGGGCTCATGTCCCTTAGTCTTGTTGAGCTCGAGGTCATGATC 179
Query 180 AAAGCCGGTGAACCCCATGACCGCAAAAATGCAGAGAAGATTCTGCCCCTCGTTAAAAAC 239
||||||||||||||||| || |||||||| || || ||||||||||| ||||||||||||
Sbjct 180 AAAGCCGGTGAACCCCACGAGCGCAAAAACGCTGAAAAGATTCTGCCACTCGTTAAAAAC 239
Query 240 CAGCACCTTCTCTTGTGTACACTCCTTATAGGCAATGCTTTGGCAATGGAGGCTCTACCG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAGCACCTTCTCTTGTGTACACTCCTTATAGGCAATGCTTTGGCAATGGAGGCTCTACCG 299
Query 300 ATCTTTGTCGATTCCCTGCTTCCAGCCTGGGGTGCTATTCTGATATCCGTCACTCTCATA 359
|||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 300 ATCTTTGTCGATTCCCTGCTTCCAGCTTGGGGTGCTATCCTGATATCCGTGACTCTCATA 359
Query 360 CTTGCCTTTGGCGAGATTATACCTCAAGCTGTATGCTCTAGATACGGACTGAGCATCGGG 419
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 360 CTTGCATTTGGCGAGATTATACCTCAAGCTGTATGCTCTAGATACGGGCTGAGCATCGGG 419
Query 420 GCAAAGCTATCAT-TTTTGGTTCGGTTGATTATTATAGTCTTCTTCCCATTATCTTATCC 478
||||||||||| | |||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 420 GCAAAGCTATC-TGTTTTGGTTCGTTTGATTATCATAGTCTTCTTCCCATTATCTTATCC 478
Query 479 AATCAGCAAGCTACTCGATTTGTTGCTTGGAAAAAGACATTCCACACTCTTAGGACGAGC 538
|||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||
Sbjct 479 AATCAGCAAGCTACTCGATTTGTTGCTTGGAAAAAGGTATTCTACACTTTTAGGACGAGC 538
Query 539 AGAGCTCAAGTCACTTGTGTATATGCACGGAAACGAGGCAGGAAAAGGCGGGGAACTAAC 598
|||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||
Sbjct 539 AGAGCTGAAGTCACTTGTGTATATGCACGGGAACGAGGCTGGAAAAGGCGGTGAACTGAC 598
Query 599 TCACGATGAAACAACAATCATATCAGGAGCTCTGGACATGTCACAGAAAAGTGCTAAAGA 658
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 599 TCACGATGAAACAACAATCATATCAGGAGCTCTGGACATGTCTCAGAAGAGTGCCAAAGA 658
Query 659 CGCAATGACACCAGTCTCTCAGATCTTTTCACTCGATATAAATTTTAAGCTCGACGAAAA 718
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 659 CGCAATGACACCAGTCTCTCAGATCTTTTCACTCGATATAAACTCTAAGCTCGACGAAAA 718
Query 719 GACAATGGGATTAATAGCAAGTGCAGGCCATAGCCGAATACCTATATACTCTGTAAATCC 778
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 719 GACAATGGGATTAATAGCAAGTGAAGGCCATAGCCGAATACCTATATACTCTGTGAATCC 778
Query 779 TAATGTTATCATTGGATTTATTCTGGTAAAGAACTTGATCAAAGTCCGTCCTGAAGATGA 838
|| |||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 779 TAGCGTTATCATCGGATTTATTCTGGTAAAGAACTTGATCAAAGCCCGTCCTGAAGACGA 838
Query 839 GACATCGATCAGAGATCTCCCTATCAGAAGAATGCCCAAGG-TCGATTTGAATTTACCTC 897
|||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 839 GACACCGATCAGAGATCTCCCTATCAGAAGAATGCC-AAGGGTCGATTTGAATTTACCTC 897
Query 898 TCTACGACATCCTCAACATCTTCCAAACAGGTCGAAGCCACATGGCTGCTGTCGTTGGGA 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TCTACGACATCCTCAACATCTTCCAAACAGGTCGAAGCCACATGGCTGCTGTCGTTGGGA 957
Query 958 CCAAGAACCACACTAATACCAACACTCCAGTCCATGAAAAGAGCATCAATGGATCGCCTA 1017
|||||||| | ||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 958 CCAAGAACTATACTAATATTAACACTCCAGTCCACGACAAGAGCATCAATGGATCGCCTA 1017
Query 1018 ATAAAGACGCCAACGTTTTTCTGAGTATTCCCGCGTTGAACTCCAGCGAAACTAGTCATC 1077
||||||| ||||||||| ||||| ||||| | | ||||||||||||||| || || ||
Sbjct 1018 ATAAAGATGCCAACGTT---CTGAGCATTCCTGTGATGAACTCCAGCGAAAGTAATCGTC 1074
Query 1078 AAAGTCCAATCCGATACATTGATAGTATTTCTGATGAAGATGAAGAAGTCATTGGGATTA 1137
||||||||||||||||||| |||| |||| ||||||||||||||||| ||||||||||||
Sbjct 1075 AAAGTCCAATCCGATACATCGATACTATTGCTGATGAAGATGAAGAAATCATTGGGATTA 1134
Query 1138 TAACTCTGGAAGATGTTATGGAGGAACTTATACAGGAAGAAATATATGATGAGACGGACC 1197
||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1135 TAACTCTGGAAGATGTTGTGGAAGAACTTATACAGGAAGAAATATTTGATGAGACGGACC 1194
Query 1198 AGTACGTCGAACTTCATAAAAGGATAACAATAAACATGCCAATGTCGGGAAATTCGCCGG 1257
|| |||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1195 GGTGCGTCCAACTTCATAAAAGAATAACAATAAACATGCCAATATCGGGAAATTCGCCGG 1254
Query 1258 AAACTGCCACTTGGGCTTCGGAGCTGGCATCTCCTATCTCGCCGTATCGCTCAAGTCTTC 1317
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1255 AAACTGCTACTTGGGCTTCAGAGCTGGCATCTCCTATCTCGCCGTATCGCTCAAGTCCTC 1314
Query 1318 TGTCGCCGAGCATCATGATCTCTACGCTGCTGCGGTCACCAATAAATTCACCTTACCGTC 1377
|||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1315 TGTCACCGAGCCTCATGATCTCTACGCTGCTCCGGTCACCAATAAATTCACCTTACCGCC 1374
Query 1378 AC---TCT-CTGTTACTCCGACCAACACTCCACGCTTCTCCACCAGCGCAATCTCCTTCC 1433
|| ||| | ||| ||||| |||||||| |||||||||||||| || ||| ||||||||
Sbjct 1375 ACCAGTCTTC-GTTTCTCCGGCCAACACTTCACGCTTCTCCACCGGCACAACCTCCTTCC 1433
Query 1434 ATACTCTCTCCGGACAGTAATAATGAGCGTTATTATTACT-TGTCTCCTAGTAGGGTGTT 1492
| ||||||||||||||||| ||||||||||| || | | ||||||||||||||||
Sbjct 1434 GTGCTCTCTCCGGACAGTAAC---GAGCGTTATTACTA-TATATCTCCTAGTAGGGTGTG 1489
Query 1493 GAGGAAATCGTATGAAAAGCTATCAAGATCAAATGGTTCCTAAAATTGGAT 1543
||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1490 GAGGAAATCGTATGAAAAGTTATCAAGATCAAATGGTTCGTAAAATTGGAT 1540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58354255340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5