BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52800.3
Length=1954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495344 jgi|Araly1|495344|fgenesh2_kg.8__1160__AT5G52800.1 2344 0.0
Ahg495345 jgi|Araly1|495345|fgenesh2_kg.8__1161__AT5G52810.1 152 9e-36
> Ahg495344 jgi|Araly1|495344|fgenesh2_kg.8__1160__AT5G52800.1
Length=1648
Score = 2344 bits (1269), Expect = 0.0
Identities = 1394/1456 (96%), Gaps = 2/1456 (0%)
Strand=Plus/Plus
Query 105 AAAAAATGTCGAAGAAACTTAGCTCGAACTCCATGGATGATGTTGATCGATTGTTTCAGT 164
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 57 AAAAAATGTCGAAGAAACTTAGCGCGAACGCCATGGATGATGTTGATCGATTGTTTCAGT 116
Query 165 GTTTCAAGTGTGGGATTTCTCCGCCTGCTTCTGCTATGAGAGAAAAGAAACGGAGCAAGA 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 GTTTCAAGTGTGGGATTTCTCCGCCTGCTTCTGCTATGAGAGAAAAGAAACGGAGCAAGA 176
Query 225 AAATGTTGAATTCAGAGTATGACTCTCCTGTGACCTGTAAGAAGTTGCAGCTAAGTTCTT 284
||||| ||||| |||| ||||||| |||| |||||||||||||||||||||||||||||
Sbjct 177 AAATGGTGAATCCAGAAAATGACTCACCTGGGACCTGTAAGAAGTTGCAGCTAAGTTCTT 236
Query 285 TGTCTAGATTATCTGGAAAAAGAGGAGAAAGAAATCAGATTGATGGAAGTGTCTCTGTAG 344
||||||||||||||||||||| |||| |||||||||||||||||||| ||||| | |||
Sbjct 237 TGTCTAGATTATCTGGAAAAAAAGGACAAAGAAATCAGATTGATGGAGGTGTCAGTCTAG 296
Query 345 ATTCTGTTTCTGGTTCCAGGGATGTGAAAAAGAGCGTTGGGAGGCAGTTTTCACCCATTG 404
| |||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 297 ACTCTGTTTCTGGTTCTAGGAATGTGAAAAAGAGTGTTGGGAGGCAGTTTTCACCCATTG 356
Query 405 TATTTTACGGATCTCCAAATGGCGTTCCTCCGAAAAAACCGTTGAGTTTATTAAGGCTCT 464
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 357 TATTTTACGGATCTCCAAATGGCGTTCCTCCGAAAAGACCGTTGAGTTTGTTAAGGCTCT 416
Query 465 TGCGTGAGATTCGTATTGATCTTAGTGAAGAAAGGAAAGCAATCTCCAGGAAAGGAGTTT 524
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TGCGTGAGATACGTATTGATCTTAGTGAAGAAAGGAAAGCAATCTCCAGGAAAGGAGTTT 476
Query 525 GGGCTACATTTCCTCGGCAAGAGGAAGCGATTAAGTTTGAAAAAAGGCATGACAATGTGC 584
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 477 GGGCTACATTTCCTCGGCAAGATGAAGCGATTAAGTTTGGAAAAAGGCATGACAATGTGC 536
Query 585 GGATTTTTAGTTATCAAGATCATTTTAGTGGTCAGAGAAGGTTTCTGGTTTCATCATATG 644
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 537 GGATTTTTAGTTATCAAGATCATTTTAGTGGCCAGAGAAGGTTTCTGGTTTCAACATATG 596
Query 645 AAGAATTCTGGAAGAGATACCTATCTATGGATCCAAGGCACCGACACCATTATGAAGTGA 704
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 597 AAGAATTCTGGAATAGATACAAATCTATGGATCCAAGGCACCGACACCATTATGAAGTGA 656
Query 705 TTCAAGAGGGATTGCCATGCCATATGTACTTTGATTTGGAGTTCAATCAGAAAGAAAATG 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TTCAAGAGGGATTGCCATGCCATATGTACTTTGATTTGGAGTTCAATCAGAAAGAAAATG 716
Query 765 AAGGAAAAAATGTAGATGAAATGGTTGATATCTTGATATCAGTCATTCTGGAAGCCTTGC 824
||||||||||||| |||||||||||||||||| || ||||||||||||| ||||||||||
Sbjct 717 AAGGAAAAAATGTGGATGAAATGGTTGATATCCTGGTATCAGTCATTCTTGAAGCCTTGC 776
Query 825 GTGAGAAATATGCTATCGAAGGACAAGAGGACTGGATAGTAGAGCTTGATTCCTCAACTA 884
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 777 ATGAGAAATATGCTATTGAAGGACAAGAGGACTGGATAGTAGAGCTTGATTCCTCGACTA 836
Query 885 AAGATAAGTTCTCTCGTCATGTAATTGTAATCATTCCAAAGGTTGCCTTTAAGGATAACT 944
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 837 AAGATAAGTTTTCTCGTCATGTAATTGTTATCATTCCAAAGGTTGCCTTTAAGGATAACT 896
Query 945 CACACGTTGGTGCTTTTGTTGGAGAGCTATGCTCACGGATAGTAAATGC-AAAGGAAACA 1003
||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||
Sbjct 897 CACACGTTGGTGCTTTTGTAGGAGAGCTATGCTCACGGATAGTAAATGCGAAAG-AAACA 955
Query 1004 GATGAAAGGTTGCGCAAGCTGTTTGTTCACAAAGAGGCTAATGATTCGGCATCGCTACTT 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 956 GATGAAAGGTTGCGCAAGCTGTTTGTTCACAAAGAGGCTAATGATTCGGCATCCCTACTT 1015
Query 1064 TTCGTGGATACTGCTGTTTACTCTAGAAACCGTTGCTTCCGTCTTGCACTATCATCAAAA 1123
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1016 TTTGTGGATACTGCTGTTTACTCTAGAAACCGTTGCTTTCGTCTTGCACTATCATCAAAA 1075
Query 1124 GCTGGAAAGACATCAGTTCTTTTACCTACAGGACGATTCAAATGTAAGGATATGGGTGAA 1183
||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GCTGGAAAGGCGTCGGTTCTTTTACCTACAGGACGATTCAAATGTAAGGATATGGGTGAA 1135
Query 1184 CGAGATGTTTTCATGACATCCTTAATCTGCAACGTAGAATCAGATTGTGAGAAGCTTCTG 1243
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1136 CCAGATGTTTTCATGACATCCTTAATCTGCAACATAGAATCAGATTGTGAGAAGCTTCTG 1195
Query 1244 GTTTGCAAGATGGAATCAGACTGTATGAAGACACTGTGCTTTGACACAGAGGTGAACAGT 1303
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1196 GTTTGCAAGATGGAATCAGACTGTATGAAGACACTTTGCTTCGACACAGAGGTGAACAGT 1255
Query 1304 AACAATCTTGTAAGAGACCAGAATGCTCAGAAATTTCAACTGAATGCTAGCACAAGTGAC 1363
||||||||||| ||||||||||||||||||| |||||| || ||||| |||||||||||
Sbjct 1256 AACAATCTTGTCAGAGACCAGAATGCTCAGAGGTTTCAATTGGATGCTTGCACAAGTGAC 1315
Query 1364 ATGTCAACATCATATTTCGGGGGCAAGTCCCCGTTCCCGCAACTGGACCAATTCATAGAA 1423
||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1316 ATGTCAACATCGTATTTTGGGGGCAAGTCCCCGTTCCCGCAACTGGACCAATTCGTAGAA 1375
Query 1424 TCCACTGCTTCCACGGGGAATGTCCCAGGTAAGATACGCTGCTGGTACTGGTTCTCAGAA 1483
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1376 TCCACTGCTTCCACTGGGAATGTCCCAGGGAAGATACGCTGCTGGTACTGGTTCTCAGAA 1435
Query 1484 GATGGCCTGATTGTGTACAGTATGTTAAGAAACAGATATTGCGAACGGATTGGCAGGGAA 1543
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1436 GATGGCCTGATTGTGTACAGCATGTTAAGAAACAGATATTGCGAACGGATTGGCAGGGAA 1495
Query 1544 CATAAAAGCAATCATG 1559
||||||||||||||||
Sbjct 1496 CATAAAAGCAATCATG 1511
> Ahg495345 jgi|Araly1|495345|fgenesh2_kg.8__1161__AT5G52810.1
Length=1279
Score = 152 bits (82), Expect = 9e-36
Identities = 86/88 (98%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 1867 CGAGGAAGATGATGACTGGTGGGTAGCAGCTGCAGAAGAGTCACTAAAACAAATCGCATC 1926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CGAGGAAGATGATGACTGGTGGGTAGCAGCTGCAGAAGAGTCACTAAAACAAATCGCATC 60
Query 1927 TCTAAGTCCTTCCCCAAAATGCCCTTGA 1954
| |||||||||||||||||| |||||||
Sbjct 61 TTTAAGTCCTTCCCCAAAATACCCTTGA 88
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73437992360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5