BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52810.1
Length=1273
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495345 jgi|Araly1|495345|fgenesh2_kg.8__1161__AT5G52810.1 1857 0.0
> Ahg495345 jgi|Araly1|495345|fgenesh2_kg.8__1161__AT5G52810.1
Length=1279
Score = 1857 bits (1005), Expect = 0.0
Identities = 1193/1282 (93%), Gaps = 19/1282 (1%)
Strand=Plus/Plus
Query 2 CGAGGAAGATGATGACTGGTGGGTAGCAGCTGCAGAAGAGTCACTAAAACAAATCGCATC 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CGAGGAAGATGATGACTGGTGGGTAGCAGCTGCAGAAGAGTCACTAAAACAAATCGCATC 60
Query 62 TCTAAGTCCTTCCCCAAAATGCCCTTGATTTAGAC--ATCTACCTAAGTCAAGACCAATC 119
| |||||||||||||||||| |||||||||||||| || |||||||| |||||||||||
Sbjct 61 TTTAAGTCCTTCCCCAAAATACCCTTGATTTAGACATATTTACCTAAGACAAGACCAATC 120
Query 120 TGGGTTCGTCTTCTTC------CCTTTTCTCTATTTAAAACCACCATCGT-TCCCT-AAA 171
||||||||||||||| || ||||||| |||||||||||||||| | ||| |||
Sbjct 121 CGGGTTCGTCTTCTTCGAAATTCCATTTCTCTCCTTAAAACCACCATCGTGT-CCTGAAA 179
Query 172 TCAATGAATCTCTCAAAATTCAATGGCTGCATTACCAGTATTCATACCAGCAGAGTCATT 231
|||| ||||||||||||| |||||||| | |||||||| ||||||||||| ||||| ||
Sbjct 180 TCAACAAATCTCTCAAAATCCAATGGCTTCGTTACCAGTTTTCATACCAGCCGAGTCTTT 239
Query 232 TCCATCGATCCTCTCACATGAAACCTTGATCAATCACTTTCGGACCAATCTTCCGAAACA 291
||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||
Sbjct 240 TCCATCGATCCTCTCACATGAAACCTTGATCCATCACTTTCAGACCAATCTTCCCAAACA 299
Query 292 TTCATCAACAATCACAAGCCCTGTCCGGCAAAACTACACCGTTTCATCAccttcctctct 351
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTCTTCAACAATCACAAGCCCTGTCCGGCAAAACTACACCGTTTCATCACCTTCCTCTCT 359
Query 352 cctcctcatgccttcttggtcatcttcttcttctctcccttACATGGGCGTCAAGCTCGT 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CCTCCTCATGCCTTCTTGGTCATCTTCTTCTTCTCTCCCTTACATGGGCGTCAAGCTCGT 419
Query 412 GACCTATTTCCCTCATAACTCTTCTCAGAACTTACCTGGCATCCATGGATCCTACACACT 471
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 420 GACCTATTTCCCTCATAACTCCGCTCAGAACTTACCTGGCATCCATGGATCCTACACACT 479
Query 472 CTTTAGCTCCACTACAGGCCAAACCTTAGCTACAATGGATGGTACTGTTTTAACCCTTTA 531
||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 480 CTTCAGCTCCACTACAGGCCAAACCCTAGCTACAATGGACGGTACTGTTTTAACCCTTTA 539
Query 532 CCGTACTTCCTCTGTTTCAGGCTTAGGATCCAAAATCCTAGCTAGAGACGATAGTCAAGT 591
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 540 CCGTACTTCCTCTGTTTCAGGGTTAGGCTCCAAAATCCTAGCTAGAGACGATAGTCAAGT 599
Query 592 GCTGATCATGGTTGGTTCCGGTGCTCTCGCACCACACCTGATCAAATCCCATCTAGCTGC 651
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 600 GCTGATCATGGTTGGTTCCGGTGCTCTCGCACCACACCTGATTAAATCTCATCTAGCTGC 659
Query 652 GAAACCAAGCTTGAGAAGAGTGATCATATGGAACAGAACTCCA-CAAAGGGCTCAGGAGT 710
||||||||||||||||||||| |||||||||||||||||| | |||| ||||||||| |
Sbjct 660 AAAACCAAGCTTGAGAAGAGTGGTCATATGGAACAGAACTC-ATCAAAAGGCTCAGGATT 718
Query 711 TAGCTGAAACCCTCTCCAAGGATCCTCAACACAAGGAGATTTCATTCGATAGCCACGATT 770
|||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 719 TAGCTGAAACTCTCTCTAAGGATCCTCAACACAAGGAGATCTCATTCGAGAGCCATGATT 778
Query 771 CGCTAGATCAAATCATTCCTCTAGGAGATATTATAAGCTGTGCAACAAACTCAACTGTTC 830
|| ||||| ||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 779 CGTTAGATGAAATCATTCCTCTGGGAGATATCATAAGCTGTGCAACGAACTCAACTGTTC 838
Query 831 CATTGGTCAAAGGTGAGTTCTTGAAACCCGGAACTCATCTTGACCTTGTTGGATCGTTTA 890
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 839 CATTGGTCAAAGGTGAATTCTTGAAACCCGGAACTCATCTTGATCTTGTTGGATCGTTTA 898
Query 891 GCCATGAAATGAAGGAATGTGACGACAATGCGATACAGAGAGGGAGTGTGTTTGTCGATA 950
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 899 GCCATGAAATGAGGGAATGTGACGACAATGCGATACAAAGAGGGAGTGTGTTTGTCGATA 958
Query 951 ATGACACTGCGATGATAGAAGCAGGAGAGCTCGCGGGAGCGTTTGAGAGAGGAGTGATTA 1010
| |||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 959 ACGACACTGCGATGGTAGAAGCAGGAGAGCTCGTGGGAGCGTTTGAAAGAGGAGTGATTA 1018
Query 1011 AGAGAGAAGACATTTGTGGGAATTTGGTGGAGTTGATCAAAGGTGACAAAGAAGGGAGAA 1070
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1019 AGAAAGAAGACATTTCTGGGAATTTGGTGGAGTTGATCAAAGGTGACAAAGAAGGAAGAA 1078
Query 1071 AGAGTTCAACAGACATAACAGTGTTTAAGTCCGTCGGTTCGGGTACCGTAGATCTCTTAA 1130
||| ||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1079 AGATTTCAACAGAAATAACAGTGTTTAAGTCCGTTGGTTCGGGTACTGTAGATCTCTTAA 1138
Query 1131 CCGCACAACTTGTTCACGAGACTTACCTCAGCCGTTGTTAAGCAGTG--TGAATGAATCT 1188
| ||||||||||||||||||||||| |||||||||||||||| |||| ||||| |||||
Sbjct 1139 CTGCACAACTTGTTCACGAGACTTATCTCAGCCGTTGTTAAGTAGTGAATGAAT-AATCT 1197
Query 1189 TGTTTGATCATTGCGTTTGCGAATATT-TCACATTGTTATTTAAACGAAATAAATTATTG 1247
|||| ||| |||||||||| |||||| ||||||||| ||||||||||||||| | |||
Sbjct 1198 TGTTCAATCCTTGCGTTTGCAAATATTGTCACATTGTCGTTTAAACGAAATAAAATCTTG 1257
Query 1248 --ATATGGACCTATGGTTTTGT 1267
|||||||||||||||| |||
Sbjct 1258 CTATATGGACCTATGGTTCTGT 1279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47577400416
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5