BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52830.1
Length=1313
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495347 jgi|Araly1|495347|fgenesh2_kg.8__1163__AT5G52830.1 1402 0.0
> Ahg495347 jgi|Araly1|495347|fgenesh2_kg.8__1163__AT5G52830.1
Length=1346
Score = 1402 bits (759), Expect = 0.0
Identities = 943/1025 (92%), Gaps = 39/1025 (4%)
Strand=Plus/Plus
Query 290 CTTCTTCTTCTTGCAACGAGTTACAAGATTCTTGCAAACCATTTTTACCCGTtactacta 349
|||||||||||||||||||| ||||||||||||||||||| |||||||| | ||||||
Sbjct 337 CTTCTTCTTCTTGCAACGAGCTACAAGATTCTTGCAAACCTTTTTTACCAG---CTACTA 393
Query 350 ctactactactacttggtctcctcctcctctacttcctcctcctaAAG-C-C-TCATCAC 406
|||| | ||||||||||||||||||||||||||||||||||||| || | | |||||||
Sbjct 394 CTAC-A--ACTACTTGGTCTCCTCCTCCTCTACTTCCTCCTCCTACAGTCTCATCATCAC 450
Query 407 CATCTCCCAATATCTTACTAAAACAAGAACAAGTACTTCTCGAATCACAAGATCAAAAAC 466
||||||| || |||||| | ||||||||||||||||| | |||||||||||||||||||
Sbjct 451 CATCTCCTAAAATCTTAATGAAACAAGAACAAGTACTACAAGAATCACAAGATCAAAAAC 510
Query 467 CTCCTCTTAGTGTTAGGGTTTTCCCACCATCCA------CTTCTTCTTCTGTCTTTGTTT 520
|||| ||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 511 CTCCACTTAGTGTTAGGGTTTTCCCATCATCCACTTCTTCTTCTTCTTCTGTCTTTGTTT 570
Query 521 TTAGAGGTCAACGCGACCAGCTTCTTCAACAACAATCCCAACCTCCCCTTCGATCTAGAA 580
|||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 571 TTAGAGGTCAACGCGACCAGCTTCTTCATCAACAATCTCAACCTCCTCTTCGATCTAGAA 630
Query 581 AAAGAAAGAATCAGCAAAAAAGAACCATATGTCATGTAACGCAAGAGAATCTTTCTTCTG 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 AAAGAAAGAATCAGCAAAAAAGAACCATATGTCATGTAACGCAAGAGAATCTTTCTTCTG 690
Query 641 ATTTGTGGGCTTGGCGTAAATACGGTCAAAAACCCATCAAAGGCTCTCCTTATCCAAGGA 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 ATTTGTGGGCTTGGCGTAAATACGGTCAAAAACCCATCAAAGGCTCTCCTTATCCAAGGA 750
Query 701 ATTATTACAGATGTAGTAGCTCAAAAGGATGTTTAGCACGAAAACAAGTTGAAAGAAGTA 760
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 751 ATTATTACAGATGTAGTAGCTCAAAAGGATGTTTAGCTCGAAAACAAGTTGAAAGAAGTA 810
Query 761 ATTTAGATCCTAATATCTTCATCGTTACTTACACCGGAGAACACACTCATCCACGTCCTA 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 ATTTAGATCCTAATATCTTCATCGTTACTTACACCGGAGAACACACTCATCCACGTCCTA 870
Query 821 CTCACCGGAACTCTCTCGCCGGAAGTACTCGTAACAAATCTCAGCCCGTTAACCCGGTTC 880
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 871 CTCACCGGAACTCTCTCGCTGGAAGTACTCGTAACAAATCTCAACCCGTTAACCCGGTTC 930
Query 881 CTAAACCGGACA-C--ATCTCCTTTATCGGATACAGTAAAAGAAGAGATTCATCTTTCTC 937
||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 CTAAACCCAACAACCCATCTCCTTTATCGGATACAGTAAAAGAAGAGATTCATCTTTCTC 990
Query 938 CGACGACACCGTTGAAAGGAAACGATGACGTTCAAGAAACGAATGGAGATGAAGATATGG 997
||||||||||||||||||||||||| |||||||||| ||| || || |||||||||||
Sbjct 991 CGACGACACCGTTGAAAGGAAACGACGACGTTCAAGTAACAAACGGTGATGAAGATATTA 1050
Query 998 TTGGTCaagaagtcaacatggaagaggaagaggaggaagaagaagtggaagaagatgatg 1057
|| ||||||||||||||||||| || ||||||||||||||||||| | |||||| || |
Sbjct 1051 TTAGTCAAGAAGTCAACATGGACGACGAAGAGGAGGAAGAAGAAGAAGTAGAAGAAGAAG 1110
Query 1058 aagaagaaga--a-gatg---a---tgatgacgtggatgatCTTTTGATACCAAATTTAG 1108
||||||| || | |||| | ||||||||||||| ||||||||||||| |||||||
Sbjct 1111 AAGAAGATGATGATGATGGTGAAGATGATGACGTGGATAATCTTTTGATACCGAATTTAG 1170
Query 1109 CGGTGAGAGATCGAGATGATTTGTTCTTCGCTGGAAGTTTTCCATCTTGGTCCGCCGGAT 1168
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1171 CAGTGAGAGATCGAGATGATTTGTTCTTCGCTGGAAATTTTCCATCTTGGTCCGCCGGAT 1230
Query 1169 CCGCCGGTGACGGTGGTGGATGATGAAAACGAATAAAATCTCAATTTACAATTTACaaaa 1228
||||||| |||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 1231 CCGCCGGAGACGGTGGTGGATGATGAAAACGAATAATATCTCAATTTACAA---A-AA-- 1284
Query 1229 agaaaaaaGTCAGTTTTTAATTATTATT-TTTGTTTGTTAAAA--CTTGACATTTATTGT 1285
|||||| |||||||||||||||||||| ||| |||||||||| |||||||||||||||
Sbjct 1285 -GAAAAA-GTCAGTTTTTAATTATTATTATTT-TTTGTTAAAAAACTTGACATTTATTGT 1341
Query 1286 GTTAT 1290
|||||
Sbjct 1342 GTTAT 1346
Score = 414 bits (224), Expect = 7e-115
Identities = 274/296 (93%), Gaps = 11/296 (4%)
Strand=Plus/Plus
Query 1 CTCTCGGACACTGCCCCAAtctctctctctctTTCGACAAAGAAAAAGTCAGCGCCGTCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCGGACACTGCCCCAATCTCTCTCTCTCTTTCGACAAAGAAAAAGTCAGCGCCGTCC 60
Query 61 TTTACGCCATAGTTTGtctcc-tc-ctctctctcctcctctcACCAACAT--AATCAAAG 116
||||||||||||||||||||| || ||||||||| ||||||||||||||| || ||||
Sbjct 61 TTTACGCCATAGTTTGTCTCCTTCTCTCTCTCTCTTCCTCTCACCAACATCCAAGCAAAT 120
Query 117 AAGCTTTCCT-------CACGAATTCAAGATCGCCATGTCCTCCGAGGATTGGGATCTCT 169
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 AAGCTTTCCTAAAAACCCACGAATTCAAGATCACCATGTCCTCCGAGGATTGGGATCTCT 180
Query 170 TCGCCGTCGTCAGAAGCTGCAGCTCTTCTGTTTCCACCACCAATTCTTGTGCTGGTCATG 229
|||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||
Sbjct 181 TCGCCGTCGTCAGAAGCTGCAGCTCTTCTGTTTCCATCACCAACTCCTGTGCTGGTCATG 240
Query 230 AAGACGACATAGGAAACTGTAAACAACAACAAGAtcctcctcctcctcctcTGTTT 285
||||| ||| |||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 241 AAGACAACAGAGGAAACTGTAAACAAGAACAAGATCCTCCTCCTCCCCCTCTGTTT 296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49102317096
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5