BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52840.1
Length=794
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495348 jgi|Araly1|495348|fgenesh2_kg.8__1164__AT5G52840.1 1182 0.0
Ahg495349 jgi|Araly1|495349|fgenesh2_kg.8__1165__AT5G52850.1 89.8 3e-17
> Ahg495348 jgi|Araly1|495348|fgenesh2_kg.8__1164__AT5G52840.1
Length=785
Score = 1182 bits (640), Expect = 0.0
Identities = 745/794 (94%), Gaps = 14/794 (2%)
Strand=Plus/Plus
Query 5 AACTACAAACAACATTTCTGAGATTGCGCCGGAGTCAAGGAGAGGGAGAGAGCGATCCAA 64
||| ||||||||||||||||||||| ||||||||| | | || ||||||||||||||
Sbjct 2 AACAACAAACAACATTTCTGAGATTTCGCCGGAGT-TACG-GA--GAGAGAGCGATCCAG 57
Query 65 CGGTTGAGATGTTTCTACGGGCAATCGGACGGCCATTATTGGCTAAAGTGAAGCAGACGA 124
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 58 CGGTTGAGATGTTTCTACGAGCAATCGGACGGCCATTAATGGCTAAAGTGAAGCAGACGA 117
Query 125 CGGGGATCGTCGGGCTTGACGTTGTTCCCAACGCGAGAGCGGTGCTGATCGATCTCTACA 184
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 118 CGGGGATCGTCGGGCTTGACGTTGTTCCCAACGCGAGAGCGGTGTTGATCGATCTCTATA 177
Query 185 GCAAAACCCTAAAGGAGATCCAAGCTGTGCCGGAGGATGAAGGGTACCGTAAAGCGGTGG 244
||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |
Sbjct 178 GCAAAACCCTAAAGGAGATCCAAGCCGTGCCGGAGGATGAAGGATACCGTAAATCGGTTG 237
Query 245 AATCATTCACGCGCCAACGTCTCAATGTGTGCAAGGAAGAAGAAGATTGGGAGATGATTG 304
|||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 238 AATCATTCACGCGCCACCGTCTCAATGTGTGCAAGGAGGAAGAAGATTGGGAGGTGATTG 297
Query 305 AGAAGCGGCTTGGTTGTGGTCAAGTCGAAGAGCTTATCGAAGAGGCTCGCGATGAGCTCA 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AGAAGCGGCTTGGTTGTGGTCAAGTCGAAGAGCTTATCGAAGAGGCTCGCGATGAGCTCA 357
Query 365 CACTCATTGGGAAAATGATTGAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTG 424
|||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 358 CACTCATTGGGAAAATGATTGAGTGGGATCCTTGGGGTGTTCCAGATGACTATGAGTGTG 417
Query 425 AAGTGATTGAGAATGATGCGCCGATTCCAAAGCATGTTCCTCAGCACCGACCTGGTCCTC 484
|||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 418 AAGTAATTGAGAACGATGCGCCGATTCCCAAGCATGTTCCTCAGCACCGACCTGGTCCTC 477
Query 485 TTCCTGA-GCAGTTCTATAAAACGCTTGAAGGTCTAATTGCAGAGTCTAAAACAGAGATC 543
||||||| | ||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 478 TTCCTGAAG-AGTTCTACAAAACGCTTGAAGGTCTACTTGCAGAGTCTAAAACAGAGATC 536
Query 544 CCAGCTGCTA-CACCCAGCGATCCGCAGTTGAAGGAGTAACTTCCAGTTTTTACATATTG 602
|| || |||| | || ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 537 CCGGCGGCTAGCTCC-AGCGATCCGCAGTTGAAGGAGTAACTTCCAGTTTT-ATATATTG 594
Query 603 TGTGCTTGTTGCTTTTTTGG-CTAGAGTTGTTTCCGAATCAGTGGTCAAGCCTCTGAATA 661
|||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||
Sbjct 595 TGTGCTTGTTGCTTTTTTGGGCTAGAGTTGTTTCCGAGTCAGTGGTCA-GCCTCTGAATA 653
Query 662 AATTGCTTAATAATTTTCATAACGATAACAATGTCTGTT-CACAAATGTTTTATCACTCT 720
|| |||||||||||||||| ||| ||||||||||| ||| |||||||||||||||| |||
Sbjct 654 AAATGCTTAATAATTTTCAAAAC-ATAACAATGTC-GTTTCACAAATGTTTTATCATTCT 711
Query 721 TATTAAACAAATGATGTTTCTTCCCTTTTGCAAGAACATTCGCCATTCTTAAAGATATGA 780
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 712 TATTAAACAAATGATGTTTCTTCCCTTTTGCAAGAACATACGCCATTCTTAAAGACATGT 771
Query 781 ACCTGATTCCCATC 794
||||||||||||||
Sbjct 772 ACCTGATTCCCATC 785
> Ahg495349 jgi|Araly1|495349|fgenesh2_kg.8__1165__AT5G52850.1
Length=2637
Score = 89.8 bits (48), Expect = 3e-17
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 727 ACAAATGATGTTTCTTCCCTTTTGCAAGAACATTCGCCATTCTTAAAGATATGAACC 783
||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||
Sbjct 2635 ACAAATGATGTTTCTTCCCTTTTGCAAGAACATACGCCATTCTTAAAGACATGTACC 2579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29316523173
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5