BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52850.1
Length=2682
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495349 jgi|Araly1|495349|fgenesh2_kg.8__1165__AT5G52850.1 3971 0.0
Ahg495348 jgi|Araly1|495348|fgenesh2_kg.8__1164__AT5G52840.1 117 4e-25
> Ahg495349 jgi|Araly1|495349|fgenesh2_kg.8__1165__AT5G52850.1
Length=2637
Score = 3971 bits (2150), Expect = 0.0
Identities = 2445/2589 (94%), Gaps = 13/2589 (1%)
Strand=Plus/Plus
Query 1 ATGACGAGCAAAGTAGTAGCAGCAGCAGCTTCTGCATTTCTCTCTCGCACTAACGAATTG 60
||| ||| |||||||| || || |||| ||| ||||||||||||||||||||||||||
Sbjct 1 ATGGCGACCAAAGTAG--CCA-CAACAGCATCTACATTTCTCTCTCGCACTAACGAATTG 57
Query 61 GGTAATCTTCAAAAATCATGTATTCGGATTCTCTCCTTCTGCGAATCGAATTCATCACGT 120
||||||||||| ||||||||||||||||||||||||| |||||||||| |||||| ||
Sbjct 58 AGTAATCTTCAACAATCATGTATTCGGATTCTCTCCTTTTGCGAATCGAGTTCATCGCGC 117
Query 121 ATTGGTTTACACATCCACTGCCCAGTAATAAAGTTTGGTCTTTTAGAGAATCTCGACTTA 180
|||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 118 ATTGGTTTACACATTCATTGCCCTGTAATCAAGTTTGGTCTTTTAGAGAATCTCGACTTA 177
Query 181 TGCAACAATCTTTTGAGTCTTTACTTAAAAACCGATGGTATATGGAATGCACGTAAACTG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 178 TGCAACAATCTTTTGAGTCTTTACTTAAAAACCGATGGTATATGGAATGCACGTAAGCTG 237
Query 241 TTCGATGAAATGTCTCACAGAACTGTTTTCGCATGGACAGTTATGATCTCTGCTTTTACC 300
|||||||||||| | || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 238 TTCGATGAAATGCCGCAAAGAACTGTTTTTGCATGGACAGTTATGATCTCTGCTTTTACC 297
Query 301 AAGAGCCAAGAGTTTGCATCAGCGCTTTCGTTGTTTGAGGAAATGATGGCTTCGGGAACA 360
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 298 AAGAGCCAGGAGTTTGCGTCAGCGCTTTCGTTGTTTGAGGAAATGATGGCTTCGGGAATA 357
Query 361 CACCCGAACGAATTCACTTTTTCCTCGGTGGTAAGATCTTGTGCTGGTTTAAGAGATATT 420
||||||||||||||||| |||||||||||| | |||||||||||||||||| ||||| |
Sbjct 358 CACCCGAACGAATTCACATTTTCCTCGGTGATCAGATCTTGTGCTGGTTTAGGAGATCTC 417
Query 421 AGTTACGGAGGTCGAGTTCATGGCTCTGTTATAAAGACTGGGTTTGAGGGAAACTCAGTT 480
||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||
Sbjct 418 AGTTACGGAGGTCGAGTTCATGGTTCTGTTTTAAAGACTGGGTTTGAGGGGAACTCAGTT 477
Query 481 GTTGGAAGCAGCTTGAGTGATTTGTATTCTAAGTGTGGGCAGTTTAAGGAAGCTTGTGAG 540
|||||||||||||||| |||||||||||||||||||||| || ||||||||||| ||||
Sbjct 478 GTTGGAAGCAGCTTGACTGATTTGTATTCTAAGTGTGGGAAGCTTAAGGAAGCTCGTGAA 537
Query 541 CTATTTAGTTCTCTTCAGAACGCGGATACTATCTCGTGGACGATGATGATATCTTCTTTA 600
|| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 538 CTGTTTAGTTCTCTTCAGAAGGCGGATACCATCTCGTGGACGATGATGATATCTTCTTTA 597
Query 601 GTGGGAGCTCGTAAATGGAGAGAAGCGTTGCAGTTTTACTCTGAGATGGTTAAAGCTGGT 660
|||||||||||||||||||| |||||||||| |||||||||||||||| ||||||| |||
Sbjct 598 GTGGGAGCTCGTAAATGGAGTGAAGCGTTGCGGTTTTACTCTGAGATGATTAAAGCCGGT 657
Query 661 GTTCCTCCTAACGAGTTCACATTTGTTAAGCTTTTAGGTGCCTCTTCCTTTCTCGGTTTG 720
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 658 GTTCCTCCTAACGAGTTCACGTTTGTTAAGCTTTTAGGTGCCTCTTCCTTTCTCGGTTTG 717
Query 721 GAGTTTGGTAAAACGATTCATAGCAACATAATTGTCAGGGGAATTCCGCTGAATGTGGTA 780
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 718 GAGTTTGGTAAAACGATTCATAGCAACATAATTGTCCGGGGAATTCCGCTGAATGTGGTA 777
Query 781 TTGAAGACATCTCTCGTTGATTTCTACTCGCAGTTTTCTAAAATGGAGGATGCTGTGAGG 840
|||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||
Sbjct 778 TTGAAGACATCTCTCGTTGATTTCTACTCGCATTTTTCTATAATGGAAGATGCTGTGAGG 837
Query 841 GTGTTGAATTCGAGTGGAGAACAAGACGTGTTTCTTTGGACGTCTGTGGTATCAGGGTTT 900
||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 838 GTGTTGAATTCGACTGGAGAACAGGATGTGTTTCTTTGGACGTCTGTGGTATCAGGGTTT 897
Query 901 GTAAGGAACTTGAGAGCCAAGGAAGCTGTTGGCACGTTTCTTGAGATGCGAAGTTTGGGT 960
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 898 GTAAGGAACTTGAGAGCCAAGGAAGCTGTTGGAACGTTTCTTGAGATGCGAAGTTTGGGT 957
Query 961 TTGCAACCAAATAACTTCACATACTCTGCAATCTTGAGCTTGTGTTCTGCTGTTCGTTCG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TTGCAACCAAATAACTTCACATACTCTGCAATCTTGAGCTTGTGTTCTGCTGTTCGTTCG 1017
Query 1021 CTGGATTTTGGGAAACAGATTCACTCACAGACAATTAAGGTTGGCTTCGAGGATAGCACT 1080
|||||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1018 CTGGATTTCGGCAAACAGATTCACTCACAGACAATTAAGGTTGGCTTTGAGGACAGCACT 1077
Query 1081 GATGTTGGAAATGCACTTGTA-GATATGTATATGAAGTGCTCGGCATCAGAAGTAGAAGC 1139
||||| ||||||||||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 1078 GATGTCGGAAATGCACTTGTAAG-TATGTATATGAAGTGTTCGGCATCAGAAGTAGAAGC 1136
Query 1140 TTCGAGAGTCTTTGGAGCAATGGTTTCACCAAACGTCGTCTCTTGGACAACGTTAATCTT 1199
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1137 TTCGAGAGTCTTTGGAGCAATGATCTCACCAAACGTCGTCTCTTGGACAACGTTAATCTT 1196
Query 1200 AGGTCTTGTTGATCACGGGTTCGTGCAAGATTGTTTTGGACTGCTGATGGAGATGGTAAA 1259
||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1197 AGGTCTTGTTGATCATGGGTTCGAGCAAGATTGTTTTGGACTGTTGATGGAGATGGTAAA 1256
Query 1260 ACGAGAGGTAGAACCCAATGTTGTTACCCTATCCGGTGTTCTCCGAGCCTGTAGCAAATT 1319
||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1257 ACGAGAGGTAGAACCCAATTTTGTTACTCTATCTGGTGTTCTCCGAGCCTGTAGCAAATT 1316
Query 1320 GAGACATGTAAGGCGGGTATTAGAGATTCATGCATATCTACTCAGAAGACACGTAGATGG 1379
|| | ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1317 GAAATATGTAAGGCTGGTATTAGAGATTCATGGATATCTACTCAGAAGACACGTAGATGG 1376
Query 1380 TGAAATGGTAGTAGGGAATTCACTTGTCGATGCATATGCCAGCTCGAGG-AAGGTGGATT 1438
||||||| ||||||||||||||||||||||||| |||||||||||| || ||||||||||
Sbjct 1377 TGAAATGATAGTAGGGAATTCACTTGTCGATGCTTATGCCAGCTCG-GGTAAGGTGGATT 1435
Query 1439 ATGCCTGGAATGTGATTAGGTCGATGAAAAGGAGGGATAATATCACATACACGAGCTTGG 1498
||||||||||||||| |||||||||| | | |||||||||||||||||||||||||||||
Sbjct 1436 ATGCCTGGAATGTGACTAGGTCGATGGACATGAGGGATAATATCACATACACGAGCTTGG 1495
Query 1499 TAACAAGGTTTAATGAGTTGGGCAAGCATGAAATGGCACTGAGTGTCATCAATTATATGT 1558
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1496 TAACAAGATTTAATGAGTTGGGCAAGCATGAAATGGCACTGAGTGTCATCAATCATATGT 1555
Query 1559 ATGGTGATGGAATCAGAATGGATCAGTTAAGCTTACCCGGGTTTATCTCAGCTTCAGCCA 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 ATGGTGATGGAATCAGAATGGATCAGTTAAGCTTACCCGGGTTTATCTCAGCTTCAGCCA 1615
Query 1619 ACTTGGGCGCTCTTGAAACTGGGAAACATCTTCATTGTTACTCCGTGAAATCCGGGTTTT 1678
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 ACTTGGGCGCTCATGAAACTGGGAAACATCTTCATTGTTACTCCGTGAAATCCGGGTTTT 1675
Query 1679 CTGGTGCGGCTTCGGTTTTAAATAGTCTCGTTGACATGTATAGTAAATGTGGTAGCTTGG 1738
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1676 CTGGTGCGGTTTCGGTTTTAAATAGTCTCGTTGACATGTACAGTAAATGTGGTAGCTTGG 1735
Query 1739 AAGATGCAAAGAAAGTTTTTGAAGAAATAGCTACGCCTGATGTGGTTTCTTGGAACGGGT 1798
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1736 AAGATGCAAAGAAAGTTTTTGAAGAAATAGCTATGCCTGATGTGGTTTCTTGGAACGGGT 1795
Query 1799 TGGTATCTGGTTTGGCATCAAACGGTTTTATTTCATCTGCTCTATCTGCATTTGAGGAGA 1858
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1796 TGGTATCTGGTTTGGCATCAAACGGTCGTATTTCATCTGCTCTATCTGCATTTGAGGAGA 1855
Query 1859 TGAGGATGAAAGAAACCGAGCCCGATTCAGTAACGTTCCTGATATTGCTCTCTGCTTGTA 1918
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 TGCGGATGAAAGGAACCGAGCCCGATTCAGTAACGTTCCTGATATTGCTCTCTGCTTGTA 1915
Query 1919 GTAATGGAAGATTGACTGACTTGGGCCTTGAGTATTTCCAAGT-AATGAAAAAGATTTAT 1977
|||| ||||||||||| || |||| || |||||||||||| | |||||||| |||| ||
Sbjct 1916 GTAAGGGAAGATTGACCGAGATGGGTCTCGAGTATTTCCAA-TCAATGAAAACGATTCAT 1974
Query 1978 AACATTGAGCCACAGGTAGAGCACTATGTTCATCTAGTTGGTATCTTAGGTCGTGCTGGA 2037
|| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 AATATGGAGCCACAGATAGAGCACTATGTTCATCTAGTTGGTATCTTAGGTCGTGCTGGA 2034
Query 2038 CGGCTAGAGGAAGCAACAGGAGTTGTAGAGACAATGCATTTAAAACCAAATGCTATGATC 2097
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2035 AGGCTAGAGGAAGCAACAGGAGTTGTAGAGACAATGCATTTAAAACCAAATGCTATGATC 2094
Query 2098 TTCAAAACGTTGTTGAGAGCTTGTAGATACCGTGGAAATCTGTCTTTAGGAGAAGATATG 2157
|||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 2095 TTCAAAACACTGTTGAGAGCTTGCAGATACCATGGAAATCTGTCTTTAGGAGAAGATATG 2154
Query 2158 GCTAACAAAGGCTTAGCACTTGCACCATCTGATCCAGCCTTGTACATTCTTTTGGCTGAC 2217
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 2155 GCTAACAAAGGCTTAGCACTTGCACCATCTGATCCAGCTTTCTACATTCTCTTGGCTGAC 2214
Query 2218 CTATACGACGAATCTGGAAAACCAGAGTTAGCTCAAAAGACTCGAAATTTGATGACTGAG 2277
|||| ||||||||||||||||||||||| || |||||||||||||||||||||| ||||
Sbjct 2215 TTATATGACGAATCTGGAAAACCAGAGTTGGCCCAAAAGACTCGAAATTTGATGAGTGAG 2274
Query 2278 AAGCGCTTGAGTAAAAAGCTAGGCAAGAGCACTGTGGAGGTTCAAGGAAAAGTTCACAGC 2337
||| | ||| |||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2275 AAGGGTTTGTGTAAGAAGCTAAGCAAGAGCACTGTGGAGGTTCAAGGAAAAGTTCACAGC 2334
Query 2338 TTTGTCAGTGAGGATGTTACTAGAGTGGATAAAACGAATG-GGATTTACGCAGAGATAGA 2396
|||||| ||||||||||||||| |||||| | |||||| | |||| || |||||||||||
Sbjct 2335 TTTGTCGGTGAGGATGTTACTACAGTGGAGAGAACGAA-GAGGATCTATGCAGAGATAGA 2393
Query 2397 ATCGATAAAGGAAGAGATCAAAAGGTTTGGTTCAC-CATACAGAGGTAATGAAAACGCAA 2455
||||||||||||||||||||||| ||||||||| | ||||| ||||||||||||||||||
Sbjct 2394 ATCGATAAAGGAAGAGATCAAAAAGTTTGGTTC-CTCATACCGAGGTAATGAAAACGCAA 2452
Query 2456 GCTTTCACAGTGCAAAACAAGCTGTTGTGTATGGTTTTATCTATGCGTCACCAGAAGCCC 2515
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 2453 GCTTTCACAGTGCAAAACAAGCTGTTGTGTATGGTTTTATCTATGCGTCACCACAAGCTC 2512
Query 2516 CGGTTCATGTTGTTAAGAACAAAATTCTGTGTAAGGACTGCCATGAGTTCGTGTCCATCT 2575
||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 2513 CGGTTCATGTTGTTAAGAACAAAATCCTGTGTAAGGATTGCCATGATTTCGTGTCCATCT 2572
Query 2576 TGACTCGGT 2584
|||| ||||
Sbjct 2573 TGACCCGGT 2581
Score = 89.8 bits (48), Expect = 1e-16
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 2622 GGTTCATATCTTTAAGAATGGCGAATGTTCTTGCAAAAGGGAAGAAACATCATTTGT 2678
||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2579 GGTACATGTCTTTAAGAATGGCGTATGTTCTTGCAAAAGGGAAGAAACATCATTTGT 2635
> Ahg495348 jgi|Araly1|495348|fgenesh2_kg.8__1164__AT5G52840.1
Length=785
Score = 117 bits (63), Expect = 4e-25
Identities = 69/72 (96%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2611 GATGGGAATCAGGTTCATATCTTTAAGAATGGCGAATGTTCTTGCAAAAGGGAAGAAACA 2670
|||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 785 GATGGGAATCAGGTACATGTCTTTAAGAATGGCGTATGTTCTTGCAAAAGGGAAGAAACA 726
Query 2671 TCATTTGTTTAA 2682
||||||||||||
Sbjct 725 TCATTTGTTTAA 714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101167690720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5