BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52860.1
Length=1792
Score E
Sequences producing significant alignments: (Bits) Value
Ahg357521 jgi|Araly1|357521|fgenesh1_pg.C_scaffold_8001308 2656 0.0
Ahg945508 jgi|Araly1|945508|scaffold_701737.1 1230 0.0
> Ahg357521 jgi|Araly1|357521|fgenesh1_pg.C_scaffold_8001308
Length=1839
Score = 2656 bits (1438), Expect = 0.0
Identities = 1660/1770 (94%), Gaps = 4/1770 (0%)
Strand=Plus/Plus
Query 23 ATGG-AAATACCTCCATCACCTCCGCCGGAGACGGCGGCCTACACATTAACCACCTCTTC 81
|||| |||| ||||| || ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGGAAAAT-CCTCCGTCGCCTCCACCGGAGACGGCGGCCTATACATTAACCACCTCTTC 59
Query 82 AATCTCCTACACCATACCAAAAACCTCTCTCTCCCTCCTCCGCTTCCCGGCGACTGAGCC 141
|||||||| |||| ||| ||||||||||| ||||||||| ||||||| |||||||||||
Sbjct 60 TATCTCCTATACCAAACCCAAAACCTCTCTTTCCCTCCTCGGCTTCCCCGCGACTGAGCC 119
Query 142 ACCCTCCTTTATCCTCCGCAACATCACTCTCACCGCTCATCCAACCGAGATCCTCGCCGT 201
||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 120 ACCCTCCTTTATCCTCCGCAACATCACTCTCACTGCTCATCCCACCGAGATCCTAGCCGT 179
Query 202 CGTTGGCCCTTCCGGCGCCGGAAAATCAACTCTCCTTGACATTCTCGCCTCTAAAACCTC 261
|||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 180 CGTTGGCCCTTCCGGCGCCGGAAAATCAACCCTCCTGGACATTCTCGCCTCAAAAACCTC 239
Query 262 CCCAACTTCCGGTTCAATCCTCCTTAACTCCATTCCCATTAACCCTTCCTCTTATCGAAA 321
|||||| ||||| |||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 240 CCCAACCTCCGGCTCAATCCTACTGAACTCCATTCCCATCAACCCTTCCTCTTATCGAAA 299
Query 322 AATCTCCTCTTACGTTCCCCAACATGACTCTTTCTTCCCTCTCCTCACCGTCTCCGAGAC 381
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 300 GATCTCCTCTTACGTTCCCCAACACGACTCTTTCTTCCCTCTCCTCACCGTCTCTGAAAC 359
Query 382 CTTCTCCTTCGCTGCTTGTCTCTTGCTCCCAAACCCATC-AATAGTTTCTGAAACCGTAA 440
||||||||||||||| |||||||||||||||||||||| ||| || |||||||| ||||
Sbjct 360 ATTCTCCTTCGCTGCTCGTCTCTTGCTCCCAAACCCATCAAAT-GTCTCTGAAACGGTAA 418
Query 441 CCTCTCTTCTATCAGAGCTTAACCTAACACATCTTTCCCACACAAGACTCGCTCAAGGCT 500
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 419 CCTCTCTTCTCTCAGAGCTTAACCTAACACATCTTTCCGACACAAGACTCGCTCAGGGCT 478
Query 501 TATCCGGTGGCGAAAGAAGAAGAGTCTCGATAGGGTTAAGCCTCCTTCACGACCCTTGCT 560
|||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 479 TATCCGGTGGTGAAAGAAGAAGAGTCTCTATAGGTTTAAGCCTCCTTCACGACCCTTGCT 538
Query 561 TTCTTCTCCTCGATGAACCCACTTCGGGTTTAGACAGTAAATCCGCTTTTGACGTCATTC 620
|||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 539 TTCTCCTCCTCGACGAACCTACTTCGGGTTTAGACAGTAAATCCGCTTTTGACGTCATCC 598
Query 621 ACATCCTCAAATCCATCGCTGTGTCAAGACAACGGACCGTGATATTGTCCATTCACCAGC 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ACATCCTCAAATCCATCGCTGTGTCAAGACAACGGACCGTGATATTGTCCATTCACCAGC 658
Query 681 CTAGCTTCAAGATTCTGTCTATCATCGATCGGTTGTTACTTCTTTCAAAAGGAACTGTTG 740
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 659 CTAGCTTCAAGATTCTCTCTATCATTGATCGATTGTTACTTCTTTCAAAAGGAACTGTTG 718
Query 741 TGTACCACGGAAGACTTGACTCCCTCGAAGGTTTCTTGCTCTTCAAGGGATTTACCGTCC 800
|||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 719 CGTACCACGGAAGGCTTGATTCCCTCGAAGGTTTCTTGCTCTTCAAGGGATTCACCGTCC 778
Query 801 CTCCGCAGCTCAATTCCCTTGAATATGCAATGGAAATACTTCAAGAACTACGAGAATCCG 860
|||| |||||||||||||| ||||| || |||||||||||||||||||| ||||||||||
Sbjct 779 CTCCACAGCTCAATTCCCTCGAATACGCCATGGAAATACTTCAAGAACTTCGAGAATCCG 838
Query 861 ACGGAAACACCGATGCTACTGCTCTCCCTTCAATCGAAAACCGGAAACAGAGAGAAAAAC 920
| ||||||||| | |||| ||||||||| || | ||||||||||||||||||||||||||
Sbjct 839 AGGGAAACACCAACGCTATTGCTCTCCCCTCGACCGAAAACCGGAAACAGAGAGAAAAAC 898
Query 921 AGAGTATTGTTCGATATAGAAAATCAAGAATCACCGAGATAAGCCTTCTCGCGAGAAGAT 980
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 899 AGAGTATTGTTCGATATAGAACATCAAGAATCACCGAGATAAGCCTTCTCTCGAGAAGAT 958
Query 981 TCTGGAAGATCATTTACCGGACAAGGCAACTACTTCTAACCAATGCATTAGAAGCCCTTG 1040
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 959 TCTGGAAGATCATTTACCGGACAAGACAACTACTTCTGACCAATGCATTAGAAGCACTTG 1018
Query 1041 TAGTTGGTCTTGTCCTAGGAACTATCTACATCAACATCGGAATCGGCAAAGCAGGAATTG 1100
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1019 TAGTTGGTCTTGTCCTAGGAACTATCTACATCAACATCGGAATCGGCAAAGAAGGAATCG 1078
Query 1101 AGAAAAGATTCGGTATGTTCGCCTTCACGCTCACTTTTCTCCTCTCTTCAACAACCGAAA 1160
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1079 AGAAAAGATTCGGCATGTTCGCCTTCACGCTAACTTTTCTCCTCTCTTCAACAACAGAAA 1138
Query 1161 CCCTCCCGATCTTCATCAACGAGCGTCCAATTCTTCTCAGGGAGACTTCGAGTGGTATTT 1220
|||||||||||||||||||||||||||| ||| ||||||| |||||||| |||||| |||
Sbjct 1139 CCCTCCCGATCTTCATCAACGAGCGTCCGATTATTCTCAGAGAGACTTCAAGTGGTGTTT 1198
Query 1221 ACAGACTCTCCTCTCACATTCTCGCAAATACACTCGTATTCTTGCCGTACTTGTTCGTTA 1280
||||||||||||||||||||||||| || |||||||| |||||||| |||||||||| ||
Sbjct 1199 ACAGACTCTCCTCTCACATTCTCGCCAACACACTCGTTTTCTTGCCATACTTGTTCGCTA 1258
Query 1281 TCTCAATCATTTACTCTGTTTCGGTCTATTTCCTCATTGGTCTCTGCCCCACATGGCAAG 1340
||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||||
Sbjct 1259 TCTCAATCATTTACTCTGTTTCGGTCTATTTTCTCATTGGTCTTTGTCCCACGTGGCAAG 1318
Query 1341 CTTTTGGGTACTTCGTTCTCGTGATATGGATCATTCTCCTAATGGCGAACTCTTTTGTTC 1400
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1319 CTTTTGGGTACTTCGTTCTCGTGATATGGATTATTCTCCTAATGGCGAACTCTTTCGTTC 1378
Query 1401 TCTTCTTGAGCTCTCTTGCCCCAAATTACATTACGGGAACCTCTCTTGTGACAATTCTTC 1460
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1379 TCTTCTTGAGCTCTCTTGCCCCAAATTACATCGCGGGAACCTCTCTTGTGACGATTCTTC 1438
Query 1461 TAGCGGCTTTCTTCTTGTTTTCCGGTTACTTCATTTCCAAGGAAAGTCTTCCCAAGTACT 1520
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TAGCGGCTTTCTTCTTGTTCTCCGGTTACTTCATTTCCAAGGAAAGTCTTCCCAAGTACT 1498
Query 1521 GGCTTTTCATGTACTTCTTCTCAATGTATAAGTATGCATTGGATGCACTTCTGATAAACG 1580
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1499 GGCTTTTCATGTACTTCTTCTCAATGTATAAATATGCATTGGATGCACTTCTGATAAATG 1558
Query 1581 AGTACTCGTGCTTAGCCTCCAAGTGTTTGGTCTGGTTGGAGGAAGCTCAAACAAAGATCT 1640
||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1559 AGTACTCGTGCTTGGCCTCCAAGTGTTTGGTCTGGTTGGAGGAAGCTCAAGCGAAGATCT 1618
Query 1641 GCATGGTTACTGGAGGTGACGTGTTGAAGAAGAAAGGACTTCATGAGAAACAGAGGTGGT 1700
|| ||||||| ||||||||||||||||| |||||||| ||| |||||||||| |||||||
Sbjct 1619 GCGTGGTTACGGGAGGTGACGTGTTGAAAAAGAAAGGGCTTGATGAGAAACAAAGGTGGT 1678
Query 1701 TTAATGTTTATGTTTTGTTAGGGTTTTTCGTACTTTATCGTGTGTTGTGTTTTCTTGCTC 1760
| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1679 TGAATGTTTATGTTTTGTTAGGGTTTTTCGTACTTTATCGCGTCTTGTGTTTTCTTGCTC 1738
Query 1761 TCCTTAGAAGAGTTTCTGGTTCAAAGAGGT 1790
|||||||||| ||||| ||||| |||||||
Sbjct 1739 TCCTTAGAAGGGTTTCAGGTTCCAAGAGGT 1768
> Ahg945508 jgi|Araly1|945508|scaffold_701737.1
Length=1775
Score = 1230 bits (666), Expect = 0.0
Identities = 1408/1760 (80%), Gaps = 76/1760 (4%)
Strand=Plus/Plus
Query 68 TTAACCACCTCTTCAATCTCCTACACCATACCAAAAACCTCTCTCTCC-CTCCTCCGCTT 126
||| |||||||||| ||||||| | | || |||||||| || || ||||| | | |
Sbjct 36 TTATCCACCTCTTCCATCTCCT--A-C--GCC--AAACCTCTTTCACCGCTCCT-C-C-T 85
Query 127 CCCGGCGACTGAGCCACCCTCCTT-TATCCTCCGCAACATCACTCTCACCGCTCATCCAA 185
| |||| | ||| || ||| ||| |||||||||||||||||||||||| |||||||
Sbjct 86 CACGGC--C-GAG-CAACCTTCTTACATCCTCCGCAACATCACTCTCACCTCTCATCCTT 141
Query 186 CCGAGATCCTCGCCGTCGTTGGCCCTTCCGGCGCCGGAAAATCAACTCTCCTTGACATTC 245
|| | || |||||| | ||||||||| ||||||||||||||||||||| || || || |
Sbjct 142 CCCAAATTCTCGCCATTGTTGGCCCTAGCGGCGCCGGAAAATCAACTCTTCTCGATATCC 201
Query 246 TCGCCTCTAAAACCTCCCCAACTTCCGGTTCAAT-CCTCCTTAACTCCATTCCC-ATTAA 303
||||| | | ||||| ||| || || || ||||| | | || |||||| |||| |||||
Sbjct 202 TCGCCGCGAGAACCTTCCCGACCTCTGGCTCAATGCAT-CTAAACTCC-GTCCCTATTAA 259
Query 304 CCCTTCCTCTTATCGAAAAATCTCCTCTTACGTTCCCCAACATGACTCTTTCTTCCCTCT 363
|||||| ||||| || ||||||||||| |||||||| ||||| ||| | |||||||||||
Sbjct 260 CCCTTCTTCTTACCGTAAAATCTCCTCCTACGTTCCTCAACACGACACCTTCTTCCCTCT 319
Query 364 CCTCACCGTCTCCGAGACCTTCTCCTTCGCTGCTTGTCTCTTGCTCCC--AAA-CCCATC 420
|||||||||||||||||||||| | ||| |||| | |||||||||||| ||| ||||||
Sbjct 320 CCTCACCGTCTCCGAGACCTTCACTTTCTCTGCCTCTCTCTTGCTCCCAAAAATCCCATC 379
Query 421 AATAGTTTCTGAA-ACCGTAACCTCTCTTCT-ATCAGAGCTTAACCTAACACATCTTTCC 478
|| ||| || || ||| ||||| || | ||| || ||| ||||||||||| |
Sbjct 380 AAAAGTCTC-CAATGTCGTCGTTTCTCTCCTCA-AAGAACTAAACTTAACACATCTTGCA 437
Query 479 CACACAAGACTCGCTCAAGGCTTATCCGGTGGCGAAAG-AAGAAGAGTCTCGATAGGGT- 536
|| |||||||||| ||||||||| |||||||| ||| | | || || | || || |||
Sbjct 438 CATACAAGACTCGGTCAAGGCTTGTCCGGTGGTGAACGTAGGAGGA-TTTCAAT-CGGTC 495
Query 537 TAAGCCTCCTTCACGACCCTTG-CTTTCTTCTCCTCGATGAACCCACTTCGGGTTTAGAC 595
|||| || |||||||| || | ||||| || || || |||||||| ||||||||||||
Sbjct 496 TAAGTCTTCTTCACGATCC-AGAATTTCTACTGCTTGACGAACCCACCTCGGGTTTAGAC 554
Query 596 AGTAAATCCGCTTTTGACGTCATTCACATCCTCAAATCCATCGCTGTGTCAAGACAACGG 655
||||||||||||||||| ||| |||| || ||||||| || ||| ||| ||||||||
Sbjct 555 AGTAAATCCGCTTTTGATGTCGTTCAGATTCTCAAATTTATTGCTACGTCGAGACAACGA 614
Query 656 ACCGTGATATTGTCCATTCACCAGCCTAGCTTCAAGATTCTGTCTATCATCGATCG-GTT 714
| |||||| |||||||| || || ||||||||||||||||| ||| |||| ||||| ||
Sbjct 615 ATCGTGATCTTGTCCATACATCAACCTAGCTTCAAGATTCTATCTCTCATTGATCGCGT- 673
Query 715 GTTACTTCTTTCAAAAGGAACTGTTGTGTACCACGGAAGACTTGACTCCCTCGAAGGTTT 774
|||||||||||| |||||||| ||||| ||||| ||||||||||||| ||||||| |||
Sbjct 674 GTTACTTCTTTCTAAAGGAACCGTTGTATACCATGGAAGACTTGACTTACTCGAAGCTTT 733
Query 775 CTTGCTCTTCAAGGGATTTACCGTCCCTCCGCAGCTCAATTCCCTTGAATATGCAATGGA 834
|||||||| ||||||||| || || ||||| ||||| ||||| ||||| || || |||||
Sbjct 734 CTTGCTCTCCAAGGGATTCACTGTTCCTCCTCAGCTGAATTCTCTTGAGTACGCTATGGA 793
Query 835 AATACTTCAAGAAC-TACGA-GAATCCG-ACG-GAAACACCGATGCTACTGCTCTCCCT- 889
|||||||| |||| | | | || ||| ||| ||| | || | | | |||||||||
Sbjct 794 GATACTTCA-GAACCTCC-ATGA-TCCCTACGAGAA-CGCCAA--C-ATTGCTCTCCCAG 846
Query 890 -TCAAT-C---GAAAACCGGAAACAGAGAGAA-AAACAGAGTATTGTTCGATATAGAAAA 943
||| | | |||| ||||||| | || |||||||| ||||||||| ||| |||
Sbjct 847 ATCACTGCCCTGAAAGTAAAAAACAGA-ACAACAAACAGAGCATTGTTCGACATA-AAAG 904
Query 944 -TCAAGAATCACCGAGATAAGCCTTCTCGCGAGAAGATTCTGGAAGATCATTTACCGGAC 1002
|| ||||| | ||| ||||||||||| | || ||||||||||||||||| ||||| ||
Sbjct 905 CTCGAGAATTAACGAAATAAGCCTTCTTTCTAGTAGATTCTGGAAGATCATATACCGAAC 964
Query 1003 AAGGCAACTACTTCTAACCAA-TGCATTAGAAGCCCTTGTAGTTGGTCTTGTCCTAGGAA 1061
|||||| | ||||||||||| | | |||||||| |||||||| ||||||||| |||| |
Sbjct 965 AAGGCAGTTGCTTCTAACCAACTTC-TTAGAAGCTCTTGTAGTCGGTCTTGTCTTAGGCA 1023
Query 1062 CTATCTACATCAACATCGGAATCGGCAAAGCAGGAATTGAGAAAAGATTCGGTATGTTCG 1121
|||||||| | || || |||| |||||||| |||||| |||| ||||||| | || |
Sbjct 1024 CTATCTACCTAAATATTGGAACCGGCAAAGAAGGAATCAAGAAGCGATTCGGCCTTTTTG 1083
Query 1122 CCTTCACGCTCACTTTTCTCCTCTCTTCAACAACCGAAACCCTCCCGATCTTCATCAACG 1181
| ||||| ||||| || |||||||| || || ||| ||||||| || || ||||| | |
Sbjct 1084 CATTCACCCTCACATTCCTCCTCTCCTCCACTACCCAAACCCTTCCAATATTCATTGATG 1143
Query 1182 AGCGTCCAATTCTTCTCAGGGAGACTTCGAGTGGTATT-TACAGACTCTCCTCTCACATT 1240
| || || ||||||||| | || || || || || | | |||||||||||||||||||||
Sbjct 1144 AACGACCTATTCTTCTCCGAGAAACCTCAAGCGG-ACTCTACAGACTCTCCTCTCACATT 1202
Query 1241 CTCGCAAATACACTCG-TATTCTTGCCGTACTTGTTCGTTATCTCAATCATTTACTCTGT 1299
|| ||||| || || | | |||||||| |||||| || | ||| ||||||| ||||||||
Sbjct 1203 CTTGCAAACAC-CTTGGTTTTCTTGCCCTACTTGCTCCTCATCGCAATCATCTACTCTGT 1261
Query 1300 TTCGGTCTATTTCCTCATTGGTCTCTGCCCCACATGGCAAGCTTTTGGGTACTTCGTTCT 1359
|| |||||||||| | ||||||||| ||||||||||||| | ||||| || ||
Sbjct 1262 CTCACTCTATTTCCTTGTAGGTCTCTGCTTTTCATGGCAAGCTTTCGCCTACTTTGTGCT 1321
Query 1360 CGTGATATGGATCATTCTCCTAATGGCGAACTCTTTTGTTCTCTTCTTGAGCTCTCTTGC 1419
||| || ||||||||| |||||||||| ||||||||||| || |||||||||||||| ||
Sbjct 1322 CGTAATCTGGATCATTGTCCTAATGGCTAACTCTTTTGTCCTTTTCTTGAGCTCTCTCGC 1381
Query 1420 CCCAAATTACATTACGGGAACCTCTCTTGTGACAATTCTTCTAGCGGCTTTCTTCTTGTT 1479
|| || ||||| | || || ||||| ||||| |||||||| |||||||||||||||||
Sbjct 1382 GCCTAACTACATCGCTGGTACATCTCTAGTGACCATTCTTCTTGCGGCTTTCTTCTTGTT 1441
Query 1480 TTCCGGTTACTTCATTTCCAAGGAAAGTCTTCCCAAGTACTGGCT-TTTCATGTACTTCT 1538
|| || |||||||| || || || |||||||| ||||||||||| ||| ||||||||||
Sbjct 1442 CTCTGGCTACTTCATCTCTAAAGAGAGTCTTCCAAAGTACTGGCTCTTT-ATGTACTTCT 1500
Query 1539 TCTCAATGTATAAGTATGCATTGGATGCACTTCTGATAAACGAGTACTCGTG-CTTAGC- 1596
|||||||||| |||||||| ||||| |||||||||||||| ||||| ||||| || ||
Sbjct 1501 TCTCAATGTACAAGTATGCGTTGGACGCACTTCTGATAAATGAGTATTCGTGTCT--GCA 1558
Query 1597 CTCCAAGTGTTTGGTCTGGTTGGAGGAAGCT-CAAACAA-AGATCTGCATGGTTACTGGA 1654
| |||||| |||||||||| ||||||||| | || || |||| | |||||||||
Sbjct 1559 CAACAAGTGCCTGGTCTGGTTTGAGGAAGCTTCTGTGAATAG--CTGCTTAGTTACTGGA 1616
Query 1655 GGTGACGTGTT-GAAGAAGAAAGGACTTCATGAGAAACAGAGGTGGTTTAATGTTTATGT 1713
||||||||||| || ||||| || |||||||||| |||||||||||||||||||||| |
Sbjct 1617 GGTGACGTGTTAGAC-AAGAATGGGCTTCATGAGAGACAGAGGTGGTTTAATGTTTATAT 1675
Query 1714 TTTGTTAGGGTTTTTCGTACTTTATCGTGTGTTGTGTTTTCTTGCTCTCCTTAGAAGAGT 1773
||||||||||| |||||||| |||||||| |||||||||||| | | |||| ||| ||
Sbjct 1676 GTTGTTAGGGTTCTTCGTACTATATCGTGTTTTGTGTTTTCTTATTTTGCTTAAAAGGGT 1735
Query 1774 TTCTGGTTC-AAAGAGGTAA 1792
||| ||||| ||| || |||
Sbjct 1736 TTCGGGTTCCAAA-AGATAA 1754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67267372670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5