BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52870.1
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916914 jgi|Araly1|916914|Al_scaffold_0008_1665 1182 0.0
Ahg359596 jgi|Araly1|359596|fgenesh1_pg.C_scaffold_453000001 928 0.0
> Ahg916914 jgi|Araly1|916914|Al_scaffold_0008_1665
Length=936
Score = 1182 bits (640), Expect = 0.0
Identities = 878/984 (89%), Gaps = 51/984 (5%)
Strand=Plus/Plus
Query 81 ATGGAAGCTCTTACCTTTATGAAATTCTGGTTAA-C--CAACAACACAACCATCAAACCT 137
||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1 ATGGAAGCTCTTAGCTTTATGAAATTCTGGTTAACCAACAACAACACAACCATCAAACCT 60
Query 138 CGCCGTGAAATCAGAATCTCAGAATCCGCCGTCGATTCCACCACCGGATCAGAAGATCCC 197
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 CGCCGTGAAATCAGAATCTCAGAATCCGCCGTCGATTCCACCACCGCATCAGAAGATCCC 120
Query 198 GACCTTGACCTCTGCGAAGGAGAGGATTCCTTCTTCGAGCTCAAGATCTCTCTCTCGGAT 257
|| |||||||||| ||||||||| |||||||||||||| ||| ||||||||||||| |||
Sbjct 121 GAACTTGACCTCTACGAAGGAGACGATTCCTTCTTCGAACTCGAGATCTCTCTCTCCGAT 180
Query 258 TTCAAAACACCTAAAGAAAAACAGAGACTCGAaacaacaacaacaacaacaacGTACTCT 317
||| ||| | | ||||||||||||||||| | ||| || |||||||||
Sbjct 181 TTC-AAA-A-C---AGAAAAACAGAGACTCG--------A-AAC--GAA-GACGTACTCT 222
Query 318 GTTTCTAACAAAAGCAAAGTCCTTCCTTTCGTTGATATCTCTTCAAAACCCCAACAATCT 377
||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||
Sbjct 223 GTTTCTAACAAAAGCAAAGTCCTTCCTTTCGTTGATATCACTACAAAACAACAACAATCT 282
Query 378 CCGACCACTCTTTTGAAATCCGGTCAAAAGTTTCGTGCTTTCTCATTCAAGAAGTCAGAA 437
|||| |||||||||||||||||| | |||||||||||||||||||||||||||||| |||
Sbjct 283 CCGATCACTCTTTTGAAATCCGGACCAAAGTTTCGTGCTTTCTCATTCAAGAAGTCTGAA 342
Query 438 AAGTCAACGACGACTGAGAAGAAGAAAGAAGAAAACAACCGAACTAGTCTCAACGTAAGA 497
||||||||||||||||||||||||||||||| || || | | | | | | ||
Sbjct 343 AAGTCAACGACGACTGAGAAGAAGAAAGAAG--AA-AA-C--A--A----C-A-G--AG- 385
Query 498 TTCAGAGTCGACGATGAAACAACAACAACAAGTTTCAGAAAAACAGCAAGCATTGCGAGA 557
|| || |||| | || ||||| || ||||||||||| || ||||||||||||
Sbjct 386 -TC-GA--CGAC---G-----AC-ACAACGAGCTTCAGAAAAACGGCGAGCATTGCGAGA 432
Query 558 TCACAACAAACAGACGACACGATGTTCGACGACTCTGTTTCAAAGAGATTCTTCAGTCTC 617
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 433 TTACAACAAACAGACGACACGATGTTCGACGACTCTGTTTCGAAGAGATTCTTCAGTCTC 492
Query 618 ATTAAACCTTTGTACACTAAATCAACGAAGAAGCAGTCATCGTCGACGATTACATCTCCG 677
|| |||||||| ||||| |||||||||||||| || ||||| ||||||||||||||||||
Sbjct 493 ATAAAACCTTTATACACCAAATCAACGAAGAAACATTCATCCTCGACGATTACATCTCCG 552
Query 678 ACGTCTTCACCGGCGACGAGAGAGAAACAGAGGAGTAATATTCCGTCGGGGATGAGAAGT 737
|||| ||||||||| | || ||||||||||||||||||||||||| |||||| |||||
Sbjct 553 TCGTCATCACCGGCGGCAAGGGAGAAACAGAGGAGTAATATTCCGTTGGGGATTCGAAGT 612
Query 738 GTGAGGAGACAACTTGGGAAGAGTCGGTCAGCTTCTGCGGCGATCGGAGGAATGTCTCCG 797
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 GTAAGAAGACAACTTGGGAAGAGTCGGTCAGCTTCTGCGGCGATCGGAGGAATGTCTCCG 672
Query 798 GCGAACAGAATCGATGAGTCTTTACAAGTTCAACAAGATGGGATTCAAAGTGCGATTCTT 857
||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 673 GCGAACAGAGTTGATGAGTCTTTACAAGTTCAACAAGATGGTATTCAAAGTGCGATTCTT 732
Query 858 CATTGCAAGAAATCGTTTCATGGCTCGAGAGAATCTTCTCTGTTATCACGATCTACGAGT 917
|||||||||| ||||||||| ||||| |||||||||||| ||||||||||||| ||||||
Sbjct 733 CATTGCAAGAGATCGTTTCACGGCTCCAGAGAATCTTCTTTGTTATCACGATCAACGAGT 792
Query 918 GAATCTTCTTCACAAGAGAAACTTAGTACTTCGTCGTCTGAAGATTCTTATTTGTTTTCA 977
|||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||
Sbjct 793 GAATCTTCTTCACAAGAGAAACTTAGTACTGCATCGTCTGAAGATTCGTATTTGTTTTCA 852
Query 978 AGGATTTCAAGTGATTCAATTTCGGAGAAATCAATGGATAGCTTGACTTCAATTAAGGAA 1037
|||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 853 AGGATTTCAAGTGATTCAATGTCGGAGAAATCGATTGATAGCTTGACTTCAATTAAGGAA 912
Query 1038 CAGAGGGAGAAGATTAGCGATTAG 1061
||| ||||||||||||||||||||
Sbjct 913 CAGCGGGAGAAGATTAGCGATTAG 936
> Ahg359596 jgi|Araly1|359596|fgenesh1_pg.C_scaffold_453000001
Length=864
Score = 928 bits (502), Expect = 0.0
Identities = 728/828 (88%), Gaps = 51/828 (6%)
Strand=Plus/Plus
Query 81 ATGGAAGCTCTTACCTTTATGAAATTCTGGTTAA-C--CAACAACACAACCATCAAACCT 137
||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1 ATGGAAGCTCTTAGCTTTATGAAATTCTGGTTAACCAACAACAACACAACCATCAAACCT 60
Query 138 CGCCGTGAAATCAGAATCTCAGAATCCGCCGTCGATTCCACCACCGGATCAGAAGATCCC 197
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 CGCCGTGAAATCAGAATCTCAGAATCCGCCGTCGATTCCACCACCGCATCAGAAGATCCC 120
Query 198 GACCTTGACCTCTGCGAAGGAGAGGATTCCTTCTTCGAGCTCAAGATCTCTCTCTCGGAT 257
|| |||||||||| ||||||||| |||||||||||||| ||| ||||||||||||| |||
Sbjct 121 GAACTTGACCTCTACGAAGGAGACGATTCCTTCTTCGAACTCGAGATCTCTCTCTCCGAT 180
Query 258 TTCAAAACACCTAAAGAAAAACAGAGACTCGAaacaacaacaacaacaacaacGTACTCT 317
||| ||| | | ||||||||||||||||| | ||| || |||||||||
Sbjct 181 TTC-AAA-A-C---AGAAAAACAGAGACTCG--------A-AAC--GAA-GACGTACTCT 222
Query 318 GTTTCTAACAAAAGCAAAGTCCTTCCTTTCGTTGATATCTCTTCAAAACCCCAACAATCT 377
||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||
Sbjct 223 GTTTCTAACAAAAGCAAAGTCCTTCCTTTCGTTGATATCACTACAAAACAACAACAATCT 282
Query 378 CCGACCACTCTTTTGAAATCCGGTCAAAAGTTTCGTGCTTTCTCATTCAAGAAGTCAGAA 437
|||| |||||||||||||||||| | |||||||||||||||||||||||||||||| |||
Sbjct 283 CCGATCACTCTTTTGAAATCCGGACCAAAGTTTCGTGCTTTCTCATTCAAGAAGTCTGAA 342
Query 438 AAGTCAACGACGACTGAGAAGAAGAAAGAAGAAAACAACCGAACTAGTCTCAACGTAAGA 497
||||||||||||||||||||||||||||||| || || | | | | | | ||
Sbjct 343 AAGTCAACGACGACTGAGAAGAAGAAAGAAG--AA-AA-C--A--A----C-A-G--AG- 385
Query 498 TTCAGAGTCGACGATGAAACAACAACAACAAGTTTCAGAAAAACAGCAAGCATTGCGAGA 557
|| || |||| | || ||||| || ||||||||||| || ||||||||||||
Sbjct 386 -TC-GA--CGAC---G-----AC-ACAACGAGCTTCAGAAAAACGGCGAGCATTGCGAGA 432
Query 558 TCACAACAAACAGACGACACGATGTTCGACGACTCTGTTTCAAAGAGATTCTTCAGTCTC 617
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 433 TTACAACAAACAGACGACACGATGTTCGACGACTCTGTTTCGAAGAGATTCTTCAGTCTC 492
Query 618 ATTAAACCTTTGTACACTAAATCAACGAAGAAGCAGTCATCGTCGACGATTACATCTCCG 677
|| |||||||| ||||| |||||||||||||| || ||||| ||||||||||||||||||
Sbjct 493 ATAAAACCTTTATACACCAAATCAACGAAGAAACATTCATCCTCGACGATTACATCTCCG 552
Query 678 ACGTCTTCACCGGCGACGAGAGAGAAACAGAGGAGTAATATTCCGTCGGGGATGAGAAGT 737
|||| ||||||||| | || |||||||||||||||||||||||||||||||| |||||
Sbjct 553 TCGTCATCACCGGCGGCAAGGGAGAAACAGAGGAGTAATATTCCGTCGGGGATTCGAAGT 612
Query 738 GTGAGGAGACAACTTGGGAAGAGTCGGTCAGCTTCTGCGGCGATCGGAGGAATGTCTCCG 797
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 GTAAGGAGACAACTTGGGAAGAGTCGGTCAGCTTCTGCGGCGATCGGAGGAATGTCTCCG 672
Query 798 GCGAACAGAATCGATGAGTCTTTACAAGTTCAACAAGATGGGATTCAAAGTGCGATTCTT 857
||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 673 GCGAACAGAGTTGATGAGTCTTTACAAGTTCAACAAGATGGTATTCAAAGTGCGATTCTT 732
Query 858 CATTGCAAGAAATCGTTTCATGGCTCGAGAGAATCTTCTCTGTTATCA 905
|||||||||| ||||||||| ||||| ||||| || | | |||| |||
Sbjct 733 CATTGCAAGAGATCGTTTCACGGCTCCAGAGATTCGTATTTGTTTTCA 780
Score = 163 bits (88), Expect = 3e-39
Identities = 98/103 (95%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 959 AGATTCTTATTTGTTTTCAAGGATTTCAAGTGATTCAATTTCGGAGAAATCAATGGATAG 1018
|||||| |||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 762 AGATTCGTATTTGTTTTCAAGGATTTCAAGTGATTCAATGTCGGAGAAATCGATTGATAG 821
Query 1019 CTTGACTTCAATTAAGGAACAGAGGGAGAAGATTAGCGATTAG 1061
|||||||||||||||||||||| ||||||||||||||||||||
Sbjct 822 CTTGACTTCAATTAAGGAACAGCGGGAGAAGATTAGCGATTAG 864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48797333760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5