BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52880.1
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331646 jgi|Araly1|331646|fgenesh1_pm.C_scaffold_8000989 1212 0.0
> Ahg331646 jgi|Araly1|331646|fgenesh1_pm.C_scaffold_8000989
Length=798
Score = 1212 bits (656), Expect = 0.0
Identities = 750/796 (94%), Gaps = 4/796 (1%)
Strand=Plus/Plus
Query 18 ATGAAGAGATACCAAAATCTAAAGGTAGGAGAAGCTTTCTCCAAAAATCGTATTTACCCA 77
||| |||||||||||||||||| ||||||||||||||| || || |||||| ||||||||
Sbjct 1 ATGGAGAGATACCAAAATCTAATGGTAGGAGAAGCTTTATCGAAGAATCGTCTTTACCCA 60
Query 78 TTTGCTTGCAATGAACTAAGCTCCATATTGAATCTTGCTTACTCTCTATCACCCAAAAAT 137
|||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||
Sbjct 61 TTTGCTTGCAATGAACTAAGCTCCATTTTGAATCTTGCTTACTCTCGATTACCCAAAAAT 120
Query 138 GTCAAAGCTTTGATCTTCCAAGATACCCTCTCCGCTTTTCGTCTTCTTCCCGACATCAAT 197
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTCAAAGCTTTGATCTTTCGAGATACCCTCTCCGCTTTTCGTCTTCTTCCCGACATCAAT 180
Query 198 ACATCAGCTGCTGTTTCAGCCGCTAACCTTCTCCTGAAGAGCGTGGAAGCGGTGCTCCCC 257
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 181 ACATCAGCTGCTGTTTCAGCCGCTAACCTTCTCCTGAAGAGCGTAGAAGCTGTGCTCCCT 240
Query 258 AAACAGAAGAAGAATTTAGCCATTGTAGAATTCAAGCAGGCAAAAGTAGCACTAAAGAGG 317
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAACAGAAGAAGAATTTAGCCATTGTAGAATTCAAGCAGGCAAAAGTAGCACTAAAGAGA 300
Query 318 CGTAGTAAGAACCGTGAGGAAGAAGATATAGATATACCTTCACTTCCACAAGATATCCTT 377
|| ||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGCAGTAAGAGCTGTGAGGAAAAAGATATAGATATACCTTCACTTCCACAAGATATCCTT 360
Query 378 ATTCACATCTTCAGTTTCCTCGA-GATATCGTCCTTAGTTTCCTCAGCTCAAGTGTCTCG 436
||||||||||||||||||||||| | ||||||||||| |||||||||||||||| |||||
Sbjct 361 ATTCACATCTTCAGTTTCCTCGATG-TATCGTCCTTACTTTCCTCAGCTCAAGTATCTCG 419
Query 437 CTCTTGGAACCAAGCAACGCATGAGAACTCTCTGTGGCAATCACAATTTGACCTTCACTT 496
||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 420 CTCATGGAACTAAGCAACGCATGAGAACTCTCTGTGGCAAACACAATTTGACCTTCACTT 479
Query 497 CAATCACAAAGTCTTGATTCGTATGCAGTCCGATATTGACTGGAGAGAAGCCTTTAAGAA 556
|||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| ||
Sbjct 480 CAATCAAAAAGTCTTGATTCGTATTCAGTCCGGTATTGACTGGAGAGAAGCCTTTAAAAA 539
Query 557 AGCATACATCGCGGCTAATTCATCGGAGGCATTGAGATCTGGCCGGGGATACTGCAGTTA 616
|||||| ||||||||||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct 540 AGCATATATCGCGGCTAATTCATCAAAGGCGTTGAGATCTGGTCGGGGATACTGCAGTTA 599
Query 617 CTGTGATTCTATTGTTTGGCACGAAAACTTGAGATGT-CTGAACAAACAATGTCGGTTGA 675
|||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||
Sbjct 600 CTGTGATTCTATTGTTTGGCACGACGACTTGAGATGTGCA-AACAAACAATGTCGGTTGA 658
Query 676 AATCAGGCAACAAGCCACTCGACCTCATAACAACTCACCAGGTTGTCAACTATTTGCTGG 735
||||||||||||||||||| ||||||||| |||||||||||||||||||||| || ||||
Sbjct 659 AATCAGGCAACAAGCCACTGGACCTCATATCAACTCACCAGGTTGTCAACTACTTACTGG 718
Query 736 GGATAGAGAGTTCTGATGATGAAAGCGAATCAGACGATGAAGCCTTTCCTGGACGACTAT 795
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 719 GAATAGAGAGTTCTGATGATGAAAGCGAATCAGACGATGAAGCCTATCCTGGACGACTAT 778
Query 796 GGAAACTTTCTTACGT 811
||||||||||||||||
Sbjct 779 GGAAACTTTCTTACGT 794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36902983656
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5