BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52890.2
Length=1639
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949853 jgi|Araly1|949853|scaffold_801740.1 1696 0.0
> Ahg949853 jgi|Araly1|949853|scaffold_801740.1
Length=1201
Score = 1696 bits (918), Expect = 0.0
Identities = 1118/1211 (92%), Gaps = 28/1211 (2%)
Strand=Plus/Plus
Query 259 TTTTAAAGTTGAAAGATCATGGATATCCCAGAGAAGATGGAGATGGATCAACTGAATCAA 318
|||||||||||||||||||||||||| || || ||| ||||||||||||||||||||
Sbjct 3 TTTTAAAGTTGAAAGATCATGGATATTCC--AG-AGA---AGATGGATCAACTGAATCAA 56
Query 319 GGGTCGAGCTCATCTCTTACCAATAAGCGAAAAAGAGGTCGTCCTCGCAGAGACGAAAGC 378
|| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 57 GGATCGAACTCATCTCTTACCAATAAGCGAAAGAGAGGTCGTCCTCGCAGAGACGAAAGC 116
Query 379 CAGACTCAGCAACCAGTGAACCCACCTGTT-G-------A-T---GAGAATCTGATAGGT 426
|||||||||| |||||||||||||| |||| | | | ||||||||||| |||
Sbjct 117 CAGACTCAGCTACCAGTGAACCCACTTGTTAGTACTACTATTGACGAGAATCTGATTGGT 176
Query 427 CGAGTTGTTTCTGGTGTGGTTGAAGGTTCTTTTGAGGCAGGCTATTTTCTCAATGTAAAG 486
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 177 CAAGTTGTTTCTGGTGTGGTTGAAGGTTCTTTCGAGGCAGGCTATTTTCTCAATGTAAAG 236
Query 487 GTTGCTGACACGGAAAAGCAATTGAAAGGCGTTGTTTTCTTACCTCAGAAAGTCACTCCA 546
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 237 GTTGCTGACACTGAAAAGCAATTGAAAGGCGTTGTTTTCTTACCAGAGAAAGTCACTCCA 296
Query 547 CTTACCCCAGCAACTGATTTGTTTCCCCAAGCTAAGATGTATGCAAGAAATGATATCCCA 606
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 297 GTTACCCCAGCAACTGATCTGTTTCCCCAAGCTAAGATGTATGCAAGAAACGATATCCCG 356
Query 607 ATTCCCTC-TTCATACCAACAAACTCCACTTCAGGAAAAGAAAAACGCTGGGAATCAAAC 665
|||||||| || | ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 357 ATTCCCTCGTT-AAACCAACAAACTCCACTTCAGGGAAAGAAAAACGCTGGGAATCAAAC 415
Query 666 TGATGACATCGGTTCTGAGCCTCAAACAGATGCCTTGATCGCTGATAAGAACCAGTCTGC 725
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 416 TGATGACATCGGTTCTGAGCCTCAAACAGATGCCTTGATTGCTGATAAGAACCAATCTGC 475
Query 726 TACTTGCACCACATCGCTGCCTGATGA-TCATCCAATGAGGGATGCGGGTGTTGGTTCTG 784
|||||||||||||| |||||| ||| | |||||||||||| ||||| ||||||||||||
Sbjct 476 TACTTGCACCACATTGCTGCCCGAT-ATTCATCCAATGAGTGATGCTGGTGTTGGTTCTA 534
Query 785 TGGCTATGGGTGAGAGGAATGATCCTATTGATACACTGATGAAAGATGTTGCTGGCTCTT 844
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 535 TGGCTATCGGTGAGAGGAATGATCCTATTGATACACTGATGAAAGATGTTGGTGGCTCTT 594
Query 845 CTGCAGAGGGTAAAGTCATTGAACCTGCAGGCCAAACCCTCTCTCTCATGCCACAGTTTG 904
||||||||| ||| |||||||||||| | ||||||| ||||||||||||||||||||||
Sbjct 595 TTGCAGAGGGGAAACTCATTGAACCTGAAAGCCAAACTCTCTCTCTCATGCCACAGTTTG 654
Query 905 GTAGTGATGGCGTACCCAAAGAAGATCATACTGTTCTGAGATCCGAAGCTTGTGCAGCAA 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GTAGTGATGGCGTACCCAAAGAAGATCATACTGTTCTGAGATCCGAAGCTTGTGCAGCAA 714
Query 965 GTAAGACAGCAGTTACAGTCACTATTACTTCACCTAAAGATTCAATTGCTAAAGGTTCTA 1024
|||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 715 GTAAGACACCAGTTACAGTTACTACTACTTCACCTAAAGATTCAATTGCTAAAGGTTCTA 774
Query 1025 CTACTTTGGTTGATTTCTTTTCAGCACCTGAAACGTCGCGAACGCAGGCCACTGGATCCA 1084
|||||||||||||||||||| |||||||||| || |||||| || |||||| |||||||
Sbjct 775 CTACTTTGGTTGATTTCTTTCCAGCACCTGAGGCGACGCGAAAGCTGGCCACGGGATCCA 834
Query 1085 GCTCTACACTGAACCTTGAACTCTTTCAGAATCAAACTAAACGATCAGGAACAGAGGATG 1144
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 835 GCTCTACACTGAACCTTGAACTCTTTCAGAAAGAAACTAAACGATCAGGAACAGAGGATG 894
Query 1145 AGAAAACTCCTGCAGATGCTGAACCTCGTGGAATGGAGGAAAAACCGGCTTCTACTGTTG 1204
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 AGAAATCTTCTGCAGATGCTGAACCTCGTGGAATGGAGGAAAAACCGGCTTCTACTGTTG 954
Query 1205 AAGATGTGCCAGAGGAGCTTCAGCTAGAGCTTGGCAACAAGAACATGAGTGCATCAGGCA 1264
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 955 AAGATGTGCCAGAGGAACTTCAGCTAGAGCTCGGCAACAAGAAAATGAGTGCATCAGGCA 1014
Query 1265 TTGCTACTGAAGCAAATCCTGATCAGTCTGTTTCATCAAAGAGCGGGTTCTTGGCAAATG 1324
|||||||||||||||||||| ||||||||| ||||||||||||||||| ||||| ||||
Sbjct 1015 TTGCTACTGAAGCAAATCCTAATCAGTCTGCATCATCAAAGAGCGGGTTATTGGCGAATG 1074
Query 1325 CTTTTGAAGGAAAAGAAGAAATCG-CAAAAGAACCAGAAGATTCTAATGCAGCAGCTTCA 1383
||||||||||||||||||||| || |||||||||||||||| ||||||||||| || |
Sbjct 1075 CTTTTGAAGGAAAAGAAGAAA-CGGCAAAAGAACCAGAAGAATCTAATGCAGCT--TT-A 1130
Query 1384 GAGAGCGGCTTCCCAGTGGCAACAACACAAGTCGATGCTAATGATTCTTGAAAAGTGGA- 1442
||||| |||||||||| |||||||||||||| |||| ||||||||||||| ||||| |
Sbjct 1131 GAGAGTGGCTTCCCAGAGGCAACAACACAAGGAGATGATAATGATTCTTGAGAAGTGAAA 1190
Query 1443 TGCAGCATCAA 1453
|||| ||||||
Sbjct 1191 TGCAACATCAA 1201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61439565185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5