BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G52901.1 Length=228 Score E Sequences producing significant alignments: (Bits) Value Ahg949855 jgi|Araly1|949855|scaffold_801742.1 298 1e-80 > Ahg949855 jgi|Araly1|949855|scaffold_801742.1 Length=244 Score = 298 bits (161), Expect = 1e-80 Identities = 203/221 (92%), Gaps = 11/221 (5%) Strand=Plus/Plus Query 1 ATgggagaggagaggagaaagagagggggagagacagaggTCCCGGGAAATGTCGGGGTG 60 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 21 ATGGGAGAGGAGAGGAGAAAGAGAGGGGGAGAGACAGAGGTCCCGGGAAGTGTCGGGGTG 80 Query 61 CGAGACGAATGTTGTCGAAAGATTAGGGGACAAAAGCCGAAATCAGAAAGTGACGTGGAG 120 |||||||||||||||||||||||||||| |||||||| |||| |||||| |||||||||| Sbjct 81 CGAGACGAATGTTGTCGAAAGATTAGGGAACAAAAGCAGAAAACAGAAAATGACGTGGAG 140 Query 121 ACTCATCAAAGTCTTATCTCTGGGGCCATTTTTGCATGG----GTTA-------CGTTTG 169 ||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 141 ACTCATCAAAGTCTTATCTCTGGGGCCATTTTTGCATGGTCTTGTTATGGGTTACGTTTG 200 Query 170 AGAGAACTCGAAATAAGGTTTTAATTAGTAATACTCCGTAT 210 ||||| || |||||||||||||||||||||||||||||||| Sbjct 201 AGAGAGCTTGAAATAAGGTTTTAATTAGTAATACTCCGTAT 241 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 7828593505 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5