BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G52901.1

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg949855 jgi|Araly1|949855|scaffold_801742.1                        298    1e-80


> Ahg949855 jgi|Araly1|949855|scaffold_801742.1
Length=244

 Score =  298 bits (161),  Expect = 1e-80
 Identities = 203/221 (92%), Gaps = 11/221 (5%)
 Strand=Plus/Plus

Query  1    ATgggagaggagaggagaaagagagggggagagacagaggTCCCGGGAAATGTCGGGGTG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  21   ATGGGAGAGGAGAGGAGAAAGAGAGGGGGAGAGACAGAGGTCCCGGGAAGTGTCGGGGTG  80

Query  61   CGAGACGAATGTTGTCGAAAGATTAGGGGACAAAAGCCGAAATCAGAAAGTGACGTGGAG  120
            |||||||||||||||||||||||||||| |||||||| |||| |||||| ||||||||||
Sbjct  81   CGAGACGAATGTTGTCGAAAGATTAGGGAACAAAAGCAGAAAACAGAAAATGACGTGGAG  140

Query  121  ACTCATCAAAGTCTTATCTCTGGGGCCATTTTTGCATGG----GTTA-------CGTTTG  169
            |||||||||||||||||||||||||||||||||||||||    ||||       ||||||
Sbjct  141  ACTCATCAAAGTCTTATCTCTGGGGCCATTTTTGCATGGTCTTGTTATGGGTTACGTTTG  200

Query  170  AGAGAACTCGAAATAAGGTTTTAATTAGTAATACTCCGTAT  210
            ||||| || ||||||||||||||||||||||||||||||||
Sbjct  201  AGAGAGCTTGAAATAAGGTTTTAATTAGTAATACTCCGTAT  241



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7828593505


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5