BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52930.1
Length=1563
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495357 jgi|Araly1|495357|fgenesh2_kg.8__1173__AT5G52930.1 1480 0.0
Ahg495358 jgi|Araly1|495358|fgenesh2_kg.8__1174__AT5G52940.1 989 0.0
> Ahg495357 jgi|Araly1|495357|fgenesh2_kg.8__1173__AT5G52930.1
Length=1340
Score = 1480 bits (801), Expect = 0.0
Identities = 1019/1122 (91%), Gaps = 23/1122 (2%)
Strand=Plus/Plus
Query 372 GACGATCTCAACCCGGTTGCATCTGATTCAGATCCCAAACACATTCCCCTGCCCCCTCTT 431
|||||| | ||||||| |||||||| || |||||| |||| |||||||||||| ||||||
Sbjct 229 GACGATTTAAACCCGGCTGCATCTGGTTTAGATCCGAAACGCATTCCCCTGCCTCCTCTT 288
Query 432 GTGACTCTGCCTCATTGCCAAACCCAAGTTGTCACCAACGTCGCCATGTCCTCCTCTTCT 491
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 289 GTGACTCTGCCTCATTGCCAAACCCAAGTTGTCACCAACGTGGCCATGTCCTCATCTTCT 348
Query 492 CCTGAGCATGAAGACTGTGTTGTCGCTGTCAAGTTCTTAGGACCTCAGCTGAGCTTATGT 551
|||||| || |||| |||||||| |||||||||||||||||||||||| | |||||||||
Sbjct 349 CCTGAGGATAAAGAATGTGTTGTGGCTGTCAAGTTCTTAGGACCTCAGATCAGCTTATGT 408
Query 552 AGACCAGCTCAAAGAAACTCCGAGTGGACCAACATCAGAATCGAAAACCAATGTTTCTAC 611
||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||| ||
Sbjct 409 AGACCAGCTCAAAGAAACTCCCAGTGGATCAACATCAGAATCGAAAACCCATGTTTCCAC 468
Query 612 TCCTCCCCTGTTATGTTTTCCCAGAAAGATGGAATGTTTCGTATTCCCGGATCTGGAGGT 671
||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||
Sbjct 469 TCCTCCCCTGTTATGTTTTCCAAGAAAGATGGCATGTTTCACATTCCCGGATCTGGAGGT 528
Query 672 AACCTCATTGGATCATGGGATCTCCACAAACACAAGAAGAAACCCAAGATTCAGAGGTTG 731
||||||||||||||||||||||||||||||||||| | || ||||| ||||||||| ||
Sbjct 529 CACCTCATTGGATCATGGGATCTCCACAAACACAAGCACAATCCCAATATTCAGAGGCTG 588
Query 732 CGATTCAAGAACCTTCCCGAGCTCACCAAGACCAAAAGGGAGCTTTTGCATTCGTGTTGC 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 CGATTCAAGAACCTTCCCGAGCTCACCAAGACCAAAAGGGAGCTTTTGCATTCGTGTTGC 648
Query 792 ACAAGCCAACACTTGGTTGAGTCAACAACTACAGATGAGACTTTCTTGGTTAGGTGGTAC 851
||||||||||||||||| ||||||| |||||| |||||||||||||| || | ||| |||
Sbjct 649 ACAAGCCAACACTTGGTGGAGTCAAGAACTACGGATGAGACTTTCTTTGTCAAGTGTTAC 708
Query 852 AGGAAGGCCACATCCAGTGGCGTCGTGAAAATGAAAACAAAAGCTGCGATGGTCTTCAAG 911
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 709 AGGAAGGCCACATCCAGTGGCGTGGTGAAAATGAAAACAAAAGCTGTAATGGTCTTCAAG 768
Query 912 CTAGACGAAGAAGGAAACGCAGTCTACACTGAAGACATCGGTCATCTCTGCATTTTCCTG 971
|||||||||||||||||||| || |||||| |||||||||| |||||||||||||||||
Sbjct 769 CTAGACGAAGAAGGAAACGCTGTTTACACTCAAGACATCGGACATCTCTGCATTTTCCTC 828
Query 972 TCAAAGTCTGAACCGTTTTGTGTCCCTGCTAACTCCATTCCTGGCATGTGCCCTAACATC 1031
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 829 TCAAAGTCTGAACCGTTTTGTGTCCCTGCTAACTCCATTTCTGGCATGTGCCCTAACATC 888
Query 1032 GTCGATCTTTTTGAT-TTCGATGAATCCGCCACTT-TCGGACTGGATGAGTCCTCCCTCT 1089
||||| |||| ||| || ||||||||||||| || |||| ||||||||||||||||||
Sbjct 889 GTCGAAATTTTGGATGTT-GATGAATCCGCCA-TTGTCGGGTTGGATGAGTCCTCCCTCT 946
Query 1090 TTAGTTCTAGTCATACATACCCGGCCCCTTATCATATTCCACCACAAACTATCTTGGACT 1149
|||||| |||| |||||| || |||||||||||||||||||||||||| ||| || ||||
Sbjct 947 TTAGTTATAGTTATACATTCCGGGCCCCTTATCATATTCCACCACAAAATATATTAGACT 1006
Query 1150 AGTTTAGTTTGGATTATGAGTCTGTCTTTCCTCCTAAACCATCTTC-T-------CT-TG 1200
||||||||||||||||||||||||||||||| ||||||||||||| | || ||
Sbjct 1007 AGTTTAGTTTGGATTATGAGTCTGTCTTTCCACCTAAACCATCTTTATGTATAATCTCTG 1066
Query 1201 TAAGATTGATAAACATATGCTAAGATGCTCTTGGAGTTAATTTGCTATCATCTCTCATAA 1260
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 TAAGATTGATAAGCATATGCTAAGATGCTCTTGGAGTTAATTTGCTATCATCTCTCATAA 1126
Query 1261 TTAAGTCTCCCAACTTATTATGTTTAAACTTTATAATATCCTGTTTGCAGCAATATA-TC 1319
||||||||||| ||||||||||||||||||| | || || ||||||||||| ||
Sbjct 1127 ----GTCTCCCAACTAATTATGTTTAAACTTTATA-T--CCAATTAGCAGCAATATAATC 1179
Query 1320 ATCATTCGTGTAGTTTTGAAAGCCAAAGCGGATAAGTACATAGAACAGAATAGTGTGTGA 1379
|||| |||||||| ||||||| ||||||| |||||||||||| || ||||||||||||||
Sbjct 1180 ATCAATCGTGTAGGTTTGAAAACCAAAGCTGATAAGTACATAAAATAGAATAGTGTGTGA 1239
Query 1380 TAAAGAATCCATTTAATCTCT-CGAATGTAAGTTTAACTGACTGATTTTACTGAATCATA 1438
|||||| ||||||||||||| ||||| | |||||||||||||||||| |||||||||||
Sbjct 1240 TAAAGAGCCCATTTAATCTCTTCGAATCTGAGTTTAACTGACTGATTT-ACTGAATCATA 1298
Query 1439 TTACTATGTTTCTAATGTACAAGTGTATTGTTCTTGCTTATG 1480
| ||| ||||||||||| | |||| |||||||||||||||||
Sbjct 1299 TGACTCTGTTTCTAATGAAGAAGTCTATTGTTCTTGCTTATG 1340
Score = 287 bits (155), Expect = 2e-76
Identities = 202/223 (91%), Gaps = 9/223 (4%)
Strand=Plus/Plus
Query 92 CCGCCTTGTGAAACCTGCGACCGTGAGATCATCTCTTCTTCTGAGTCTCACTAGTAGTGG 151
|||||||||||||||||||||||||||||||| |||||||||||| ||||||| | |||
Sbjct 10 CCGCCTTGTGAAACCTGCGACCGTGAGATCAT-TCTTCTTCTGAGCCTCACTA--A-TGG 65
Query 152 CTTCTCAACTACTTCCTCGGTGCAAACTCCTCCTTTTTCCATCCTCCACGCTAGA-CCTT 210
|||||| | |||||||| ||||||||||||||| ||||||||||| |||| || ||||
Sbjct 66 TTTCTCA--T-CTTCCTCGCTGCAAACTCCTCCTTGTTCCATCCTCCGCGCT-GAACCTT 121
Query 211 GTGGAGCGGATCTCGGCAAACTCATCATTTTGACTGCTACTGGGGATCTCACCACTTTGG 270
|||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 122 GTGGAGAGGATCTCGGCAAACTCATCATTTTGACTGCTACTGGGGAGCTCAACACTTTGG 181
Query 271 ATAAGACAGTGCCACTCGAGTTGATGAAGGAAATGGTAATGAT 313
|||||| ||||||| | |||||||||||||||||||||| |||
Sbjct 182 ATAAGAAAGTGCCATTGGAGTTGATGAAGGAAATGGTAACGAT 224
> Ahg495358 jgi|Araly1|495358|fgenesh2_kg.8__1174__AT5G52940.1
Length=1260
Score = 989 bits (535), Expect = 0.0
Identities = 809/939 (86%), Gaps = 27/939 (3%)
Strand=Plus/Plus
Query 217 CGGATCTCGGCAAACTCATCATTTTGACTGCTACTGGGGAT--C-TCAC-CACTTTGGAT 272
|||||||||| |||||||||||||| | |||| || || | ||| || ||||||
Sbjct 125 CGGATCTCGGTAAACTCATCATTTTCAAAGCTAATGAATATGACAGCACTCA-TTTGGAA 183
Query 273 AAGACA-GTGCCACTCGAG-T--T-GAT-G-AAGGAAATGGTAATGATAGGGGCATCTCA 325
|||| | || ||| | ||| | | ||| | |||| ||||||| ||| ||| |||||||
Sbjct 184 AAGA-AGGTTCCAATGGAGTTGGTAGATGGAAAGGCCATGGTAACGATCGGGTCATCTCA 242
Query 326 TGGCTGGATAGCTACTTTGAAGGAAGATGGAATAATGCGTCTCCAAGACGATCTCAACCC 385
||||||| |||||||||||||||| |||||| || ||||||||||||||||||| ||||
Sbjct 243 TGGCTGGGTAGCTACTTTGAAGGACGATGGAGTAGTGCGTCTCCAAGACGATCTAAACCT 302
Query 386 GGTTGCATCTGATTCAGATCCCAAACACATTCCCCTGCCCCCTCTTGTGACTCTGCCTCA 445
||||||||||||| ||||||| |||| ||||| |||||| |||||||| |||||||||||
Sbjct 303 GGTTGCATCTGATACAGATCCGAAACGCATTCTCCTGCCTCCTCTTGTAACTCTGCCTCA 362
Query 446 TTGCCAAACCCAAGTTGTCACCAACGTCGCCATGTCCTCCTCTTCTCCTGAGCATGAAGA 505
||||||||||||||||||||||||||| |||||||| || |||||||||||| |||||||
Sbjct 363 TTGCCAAACCCAAGTTGTCACCAACGTGGCCATGTCTTCTTCTTCTCCTGAGGATGAAGA 422
Query 506 CTGTGTTGTCGCTGTCAAGTTCTTAGGACCTCAGCTGAGCTTATGTAGACCAGCTCAAAG 565
||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 423 CTGTGTTGTGGCTGTCAAGTTCTTAGGACCTCAGATCAGCTTATGTAGACCAGCTCAAAG 482
Query 566 AAACTCCGAGTGGACCAACATCAGAATCGAAAACCAATGTTTCTACTCCTCCCCTGTTAT 625
||||||| |||||| |||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 483 AAACTCCCAGTGGATCAACATCAGAATCGAAAACCCATGTTTCCACTCCTCCCCTGTTAT 542
Query 626 GTTTTCCCAGAAAGATGGAATGTTTCGTATTCCCGGATCTGGAGGTAACCTCATTGGATC 685
||||||| |||||||||| ||||||| |||||||||||||||||| |||||||||||||
Sbjct 543 GTTTTCCAAGAAAGATGGCATGTTTCACATTCCCGGATCTGGAGGTCACCTCATTGGATC 602
Query 686 ATGGGATCTCCACAAACACAAGAAGAAACCCAAGATTCAGAGGTTGCGATTCAAGAACCT 745
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 603 ATGGGATCTCCACAAACATAAGAACAAACCCAAGATTCAGAGGTTGCGATTCAAAAACCT 662
Query 746 TCCCGAGCTCACCAAGACCAAAAGGGAGCTTTTGCATTCGTGTTGCACAAGCCAACACTT 805
|||||||||||||||||||| ||||||||||||| ||||||||||||| ||| |||||||
Sbjct 663 TCCCGAGCTCACCAAGACCAGAAGGGAGCTTTTGAATTCGTGTTGCACGAGCGAACACTT 722
Query 806 GGTTGAGTCAACAACTACAGATGAGACTTTCTTGGTTAGGTGGTACAGGAAGGCCAC-AT 864
||| ||||||| ||| ||| |||||||||||||||||| |||||| ||||||| ||| |
Sbjct 723 GGTGGAGTCAAGAACCACAAATGAGACTTTCTTGGTTAAGTGGTATAGGAAGGTCACCA- 781
Query 865 CCAGTGGCGTCGTGAAAATGAAAACAAAAGCTGCGATGGTCTTCAAGCTAGACGAAGAAG 924
|||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 782 CCAGTGGCGTGGTGAAAATGAAAACAAGAGCTTTAATGGTCTTCAAGCTAGACGAAGAAG 841
Query 925 GAAACGCAGTCTACACTGAAGACATCGGTCATCTCTGCATTTTCCTGTCAAAGTCTGAAC 984
| ||||| || |||||| ||||||| || |||||||||||||||| |||||||||||||
Sbjct 842 GGAACGCTGTTTACACTCAAGACATTGGAGATCTCTGCATTTTCCTCTCAAAGTCTGAAC 901
Query 985 CGTTTTGTGTCCCTGCTAACTCC-ATTCCTGGCATGTGCCCTAACATCGTCGATCTTTTT 1043
| ||||||||| |||||| |||| || || ||||||||| |||||| ||| | | ||
Sbjct 902 CTTTTTGTGTCACTGCTAGCTCCTATCCC-GGCATGTGCTCTAACAAAGTCCA-CACCTT 959
Query 1044 G-ATTTCGATGAATCCGCCACTT-TCGGA-CTGGATGAGTCCTCCCTCTTTAGTTCTAGT 1100
| || |||| ||| ||| |||| ||| | ||| ||| |||||| || ||||| | |
Sbjct 960 GGATGTCGACGAAGACGC-ACTTGTCG-ATCTGTCTGATTCCTCCATCATTAGTGGAATT 1017
Query 1101 CATACATACCCGG-CCCCTTA-TCATATTCCACCACAAA 1137
||| | | || ||||||| | |||||||||| ||||
Sbjct 1018 TGTACTTTCG-GGTCCCCTTACT-ATATTCCACCTCAAA 1054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58544706565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5