BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52940.1
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495358 jgi|Araly1|495358|fgenesh2_kg.8__1174__AT5G52940.1 1709 0.0
Ahg495357 jgi|Araly1|495357|fgenesh2_kg.8__1173__AT5G52930.1 935 0.0
Ahg495522 jgi|Araly1|495522|fgenesh2_kg.8__1338__AT5G54320.1 684 0.0
Ahg495521 jgi|Araly1|495521|fgenesh2_kg.8__1337__AT5G54330.1 577 9e-164
Ahg493544 jgi|Araly1|493544|fgenesh2_kg.7__2977__AT4G13680.1 459 3e-128
> Ahg495358 jgi|Araly1|495358|fgenesh2_kg.8__1174__AT5G52940.1
Length=1260
Score = 1709 bits (925), Expect = 0.0
Identities = 1178/1293 (91%), Gaps = 45/1293 (3%)
Strand=Plus/Plus
Query 122 CTCCGCCTTGGGAAACCTGTGTTTGTAAGATCTTCTCTTCTCCATTCTAATGCCTTGTCA 181
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1 CTCCGCCTTGGGAAACCTGTGTTTGTAAGATCTTCTCTTCTCCATTCTAATGGCTTCTCA 60
Query 182 AATTCCTTGCTGCAAAACCCTCCTTATCACGTCTTCACCGCTGATCCTTCCGGACCAAGA 241
| |||||||||||||| |||||||||||||||||||| ||||||||||| ||| |||||
Sbjct 61 ACTTCCTTGCTGCAAATCCCTCCTTATCACGTCTTCAGCGCTGATCCTTGTGGATCAAGA 120
Query 242 TACCCGGATCTCGGAAAACTCATTATTTTCGAAGCTAATGGATATGACAGCACTCATTTG 301
|||||||||||||| |||||||| |||||| ||||||||| |||||||||||||||||||
Sbjct 121 TACCCGGATCTCGGTAAACTCATCATTTTCAAAGCTAATGAATATGACAGCACTCATTTG 180
Query 302 GAAAAGAAGGTACCAATGGAGTTGGTGGATGGAAAGGCCAGGGTAACTATCGGGTCCTCT 361
||||||||||| |||||||||||||| ||||||||||||| |||||| |||||||| |||
Sbjct 181 GAAAAGAAGGTTCCAATGGAGTTGGTAGATGGAAAGGCCATGGTAACGATCGGGTCATCT 240
Query 362 CATGGCTGGGTAGCTACTTTGAAAGACGATGGAATAGTGCGTCTCCAAGACGATCTAAAC 421
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 241 CATGGCTGGGTAGCTACTTTGAAGGACGATGGAGTAGTGCGTCTCCAAGACGATCTAAAC 300
Query 422 CTGGTTGCATCTGATACAGATCCGAAACGCATTCCCCTGCCTCCTCTTGTGACTCTGCCT 481
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 301 CTGGTTGCATCTGATACAGATCCGAAACGCATTCTCCTGCCTCCTCTTGTAACTCTGCCT 360
Query 482 CATTGCCAAACCAAAGTTGTCACCAACGTCGCCATGTCTTCTTCTTCTCCTGAGGATGAA 541
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 CATTGCCAAACCCAAGTTGTCACCAACGTGGCCATGTCTTCTTCTTCTCCTGAGGATGAA 420
Query 542 GACTGTGTTGTCGCTCTCAAGTTCTTAGGACCTCAGCTCAGCTTATGTAGACCAGCTCAA 601
||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 421 GACTGTGTTGTGGCTGTCAAGTTCTTAGGACCTCAGATCAGCTTATGTAGACCAGCTCAA 480
Query 602 AGAAACTCCGAGTGGACCAACATCAGAATCGAAAACCCATGTTTCTACTCATCCCCTGTT 661
||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||
Sbjct 481 AGAAACTCCCAGTGGATCAACATCAGAATCGAAAACCCATGTTTCCACTCCTCCCCTGTT 540
Query 662 ATGTTTTCCAAGAAAGACGGCACGTTTCGA-ATTCTTGGATCTGGAGGTCACCTCATTGG 720
||||||||||||||||| |||| ||||| | |||| |||||||||||||||||||||||
Sbjct 541 ATGTTTTCCAAGAAAGATGGCATGTTTC-ACATTCCCGGATCTGGAGGTCACCTCATTGG 599
Query 721 ATCATGGGATCTCCACAAACACAAGAACAAACCCAAGATTCAGAGGTTGCGATTCAAAAA 780
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATCATGGGATCTCCACAAACATAAGAACAAACCCAAGATTCAGAGGTTGCGATTCAAAAA 659
Query 781 CCTTCCCGAGCTCACCAAGACCAAAAGGGAGCTCTTGCATTCGTGTTGCACGAGCCAACA 840
||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||| ||||
Sbjct 660 CCTTCCCGAGCTCACCAAGACCAGAAGGGAGCTTTTGAATTCGTGTTGCACGAGCGAACA 719
Query 841 CTTGGTTGAGTCAACAACCACAAATGAGACTTTCTTGGTTAAGTGGTATAGGAAGGACA- 899
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 CTTGGTGGAGTCAAGAACCACAAATGAGACTTTCTTGGTTAAGTGGTATAGGAAGGTCAC 779
Query 900 CATCCAATGGCGTGGTGAAAATGAAAACAAGAGCTGTAATGGTCTTCAAGCTATACGAAG 959
|| ||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 780 CA-CCAGTGGCGTGGTGAAAATGAAAACAAGAGCTTTAATGGTCTTCAAGCTAGACGAAG 838
Query 960 AAGGGAAAGCTGTTTACACTCAAGACATCGGAGATCTCTGCATTTTCCTGTCAAAGTCTG 1019
||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 839 AAGGGAACGCTGTTTACACTCAAGACATTGGAGATCTCTGCATTTTCCTCTCAAAGTCTG 898
Query 1020 AACCCTTTTGTGTCACTGCTAGCTCCTTTCCCGGCATGTGCCCTAACGAAGTCCACACCT 1079
|||| |||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||
Sbjct 899 AACCTTTTTGTGTCACTGCTAGCTCCTATCCCGGCATGTGCTCTAACAAAGTCCACACCT 958
Query 1080 TGGATGTTGACGAACACGCACTTGTCGATCTGTCTGATTCCTCCATCATTAGTGGGATTT 1139
||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 959 TGGATGTCGACGAAGACGCACTTGTCGATCTGTCTGATTCCTCCATCATTAGTGGAATTT 1018
Query 1140 GTACATTCGGGTCCCCTTACTATTTTCCACCTCCAAAAATTGACTCTTAGTCTTAGGCTG 1199
|||| |||||||||||||||||| |||||||| |||||| | || | | ||
Sbjct 1019 GTACTTTCGGGTCCCCTTACTATATTCCACCT-CAAAAA--G----TT-G----A--CT- 1063
Query 1200 GAATTGAGTTCTTGTCCTAGAAGAGTCTTGTTGTCTTTTCTTAGACCTTTCAAATATCAA 1259
|| | | ||||||||||| ||||||||||||| |||||||||||||| |
Sbjct 1064 --CTT-A------G--CTAGAAGAGTC---TTGTCTTTTCTTAAACCTTTCAAATATC-A 1108
Query 1260 AATCTATATTATATATTTTCTGTGAGATTGAGATGCATATGCTCTTGGATATAGCAAATT 1319
||||||| ||||||||| |||||||||||||||||||||||||||| ||||| || ||
Sbjct 1109 AATCTATTTTATATATTCTCTGTGAGATTGAGATGCATATGCTCTTAAATATACCACCTT 1168
Query 1320 T-GT-A-AT---AT---CTGCGATGACTCGTCTTCATGATCAAATGA-ATATGATGAACT 1369
| | | || || ||||||||||||||||||||||||| || | ||||||||||||
Sbjct 1169 TTGGCACATTTGATAATCTGCGATGACTCGTCTTCATGATCAGAT-ATATATGATGAACT 1227
Query 1370 AGAACTCTGCTCTTTGGAAAATGGTTCTTTTCC 1402
||||||||| ||||||||||| |||||||||||
Sbjct 1228 AGAACTCTGTTCTTTGGAAAAAGGTTCTTTTCC 1260
> Ahg495357 jgi|Araly1|495357|fgenesh2_kg.8__1173__AT5G52930.1
Length=1340
Score = 935 bits (506), Expect = 0.0
Identities = 690/777 (89%), Gaps = 19/777 (2%)
Strand=Plus/Plus
Query 410 GACGATCTAAACCTGGTTGCATCTGATACAGATCCGAAACGCATTCCCCTGCCTCCTCTT 469
|||||| |||||| || |||||||| | |||||||||||||||||||||||||||||||
Sbjct 229 GACGATTTAAACCCGGCTGCATCTGGTTTAGATCCGAAACGCATTCCCCTGCCTCCTCTT 288
Query 470 GTGACTCTGCCTCATTGCCAAACCAAAGTTGTCACCAACGTCGCCATGTCTTCTTCTTCT 529
|||||||||||||||||||||||| |||||||||||||||| |||||||| || ||||||
Sbjct 289 GTGACTCTGCCTCATTGCCAAACCCAAGTTGTCACCAACGTGGCCATGTCCTCATCTTCT 348
Query 530 CCTGAGGATGAAGACTGTGTTGTCGCTCTCAAGTTCTTAGGACCTCAGCTCAGCTTATGT 589
||||||||| |||| |||||||| ||| |||||||||||||||||||| |||||||||||
Sbjct 349 CCTGAGGATAAAGAATGTGTTGTGGCTGTCAAGTTCTTAGGACCTCAGATCAGCTTATGT 408
Query 590 AGACCAGCTCAAAGAAACTCCGAGTGGACCAACATCAGAATCGAAAACCCATGTTTCTAC 649
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||
Sbjct 409 AGACCAGCTCAAAGAAACTCCCAGTGGATCAACATCAGAATCGAAAACCCATGTTTCCAC 468
Query 650 TCATCCCCTGTTATGTTTTCCAAGAAAGACGGCACGTTTCGA-ATTCTTGGATCTGGAGG 708
|| |||||||||||||||||||||||||| |||| ||||| | |||| |||||||||||
Sbjct 469 TCCTCCCCTGTTATGTTTTCCAAGAAAGATGGCATGTTTC-ACATTCCCGGATCTGGAGG 527
Query 709 TCACCTCATTGGATCATGGGATCTCCACAAACACAAGAACAAACCCAAGATTCAGAGGTT 768
||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| |
Sbjct 528 TCACCTCATTGGATCATGGGATCTCCACAAACACAAGCACAATCCCAATATTCAGAGGCT 587
Query 769 GCGATTCAAAAACCTTCCCGAGCTCACCAAGACCAAAAGGGAGCTCTTGCATTCGTGTTG 828
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 588 GCGATTCAAGAACCTTCCCGAGCTCACCAAGACCAAAAGGGAGCTTTTGCATTCGTGTTG 647
Query 829 CACGAGCCAACACTTGGTTGAGTCAACAACCACAAATGAGACTTTCTTGGTTAAGTGGTA 888
||| |||||||||||||| ||||||| ||| || ||||||||||||| || ||||| ||
Sbjct 648 CACAAGCCAACACTTGGTGGAGTCAAGAACTACGGATGAGACTTTCTTTGTCAAGTGTTA 707
Query 889 TAGGAAGGACACATCCAATGGCGTGGTGAAAATGAAAACAAGAGCTGTAATGGTCTTCAA 948
||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 708 CAGGAAGGCCACATCCAGTGGCGTGGTGAAAATGAAAACAAAAGCTGTAATGGTCTTCAA 767
Query 949 GCTATACGAAGAAGGGAAA-GCTGTTTACACTCAAGACATCGGAGATCTCTGCATTTTCC 1007
|||| |||||||||| ||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 768 GCTAGACGAAGAAGG-AAACGCTGTTTACACTCAAGACATCGGACATCTCTGCATTTTCC 826
Query 1008 TGTCAAAGTCTGAACCCTTTTGTGTCACTGCTAGCTCC-TTTCCCGGCATGTGCCCTAAC 1066
| |||||||||||||| ||||||||| |||||| |||| |||| |||||||||||||||
Sbjct 827 TCTCAAAGTCTGAACCGTTTTGTGTCCCTGCTAACTCCATTTCT-GGCATGTGCCCTAAC 885
Query 1067 GAA-GTCCACACCTTGGATGTTGACGAA-CACGC-ACTTGTCGA-TCTGTCTGATTCCTC 1122
| ||| | | ||||||||||| ||| | ||| | |||||| | || ||| |||||
Sbjct 886 -ATCGTCGAAATTTTGGATGTTGATGAATC-CGCCA-TTGTCGGGT-TGGATGAGTCCTC 941
Query 1123 CATCATTAGTGGGATTTGTACATTC-GGGTCCCCTTA-CTATTTTCCACCTCCAAAA 1177
| || ||||| | || ||||||| ||| ||||||| | || ||||||| | ||||
Sbjct 942 CCTCTTTAGTTATAGTTATACATTCCGGG-CCCCTTATC-ATATTCCACCAC-AAAA 995
> Ahg495522 jgi|Araly1|495522|fgenesh2_kg.8__1338__AT5G54320.1
Length=1110
Score = 684 bits (370), Expect = 0.0
Identities = 825/1035 (80%), Gaps = 69/1035 (7%)
Strand=Plus/Plus
Query 132 GGAAACCTGTGTTTGT-A-AG-ATCTTCTCTTCTC-CATTCTAATGCCTTGTCAAATTCC 187
||||||||||||| || | || |||| |||||||| | | | ||| ||| ||| |||
Sbjct 47 GGAAACCTGTGTTGGTAAGAGCATCTCCTCTTCTCTC-TAATGATGGCTTATCATCTTCT 105
Query 188 TTGCTGCAAAAC-CCTCCTTATCACGTCTTCACCGCTGATCCTTCCGGACCAAGA-TACC 245
||||||| |||| ||||||| | | || ||| |||| | | || || |||| |
Sbjct 106 TTGCTGC-AAACTCCTCCTTGTTTCATCGTCAGCGCTAAACGTTGTGG---AAGACT-TG 160
Query 246 CGGATCTCGGAAAACTCATTATTTTCGAA-GCTAATGGATATGACAGCAC-TCATTTGGA 303
|| | ||||||||| | ||||| ||| || ||| | ||||| |||| || ||||||
Sbjct 161 CGAAAGAGGGAAAACTCGTGATTTT-GAATCCTTATGAAGATGACTGCACTTC-TTTGGA 218
Query 304 AAAGAAGGTACCAATGGAGTTGGTGGATGGA-AA-GGCCAGGGTAACTATCGGGTCCTCT 361
|||||||| || |||| |||| || || || || | | ||||| ||||| || ||
Sbjct 219 TAAGAAGGTGCCTATGGCGTTGTTGTAT-GATAATGAAC-TTGTAACCATCGGTTCATCC 276
Query 362 CATGGCTGGGTAGCTACTTTGA---AAGACGATGGAATAGTGCGTCTCCAAGACGATCTA 418
||||||||| |||||||||||| | ||||| ||| || ||||||||||||||||||||
Sbjct 277 CATGGCTGGATAGCTACTTTGAGTCAGGACGACGGACTACTGCGTCTCCAAGACGATCTA 336
Query 419 AACCTGGTTGCATCTGATACAGATCCGAAACGCATTCCCCTGCCTCCTCTTGTGACTCTG 478
|||| ||||||||| |||||| | ||||||||||||||||||||||||||||| |||||
Sbjct 337 AACCCGGTTGCATCGGATACAAACCCGAAACGCATTCCCCTGCCTCCTCTTGTAACTCTC 396
Query 479 CCTCATTGCCAAAC-CAAAGTTGTCACCAACGTCGCCA-TGTCTTCTTCTTCTCCTGAGG 536
|||||||||||||| |||| | || ||||| || | || |||| || |||||||||||||
Sbjct 397 CCTCATTGCCAAACTCAAA-TCGTTACCAATGT-GTCATTGTCCTCATCTTCTCCTGAGG 454
Query 537 ATGAAGACTGTGTTGTCGCTCTCAAGTTCTTAGGACCTCAGCTCAGCTTATGTAGACCAG 596
|||||||||||||||| ||| ||||||| || ||||||||||||||||| || ||||| |
Sbjct 455 ATGAAGACTGTGTTGTGGCTGTCAAGTTTTTGGGACCTCAGCTCAGCTTTTGCAGACCGG 514
Query 597 CTCAAAGAAACTCCGAGTGGACCAACATCAGAATCGAAAACCCATGTTTCTACTCATCCC 656
||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||| |
Sbjct 515 CTCAAAGTAACTCCGAGTGGATCAACATCAGAATCGAAAACCCTTGTTTCTACTCATCTC 574
Query 657 CTGTTATGTTTTCCAAGAAAGACGGCACGTTTCGAATTCTTGGATCTGGAGGTCACCTCA 716
||| |||| ||||||||||| || |||| | |||| ||||||||||| |||||||
Sbjct 575 GTGTCATGTACTCCAAGAAAGATAACATGTTTTGCATTCCCGGATCTGGAGGACACCTCA 634
Query 717 TTGGATCATGGGATCTCCACAAACACAAGAACAAACCCAAGATT-CAGAGGTTGC-GATT 774
||||| |||||||||||| || ||||||| || | | || ||||| |||| | ||
Sbjct 635 TTGGAACATGGGATCTCCGCACACACAAG--CATA---AT--TTGCAGAGTTTGCAGTTT 687
Query 775 CAAAAACCTTCCCGAGCTCACCAAGACCAAA-AGGGAGCT-CTTGCATTCGTGTTGCACG 832
||||| ||||||| |||| || ||||||||| || |||| || | |||| || |||| |
Sbjct 688 CAAAA-CCTTCCCAAGCTGACAAAGACCAAACAGA-AGCTACTGG-ATTCATGCTGCAAG 744
Query 833 AGCCAACACTTGGTTGAGTCAACAACCACAAATGAGACTTTCTTGGTTAAGTGGTATAGG 892
||| | ||||||||||||||| || | ||| |||||||||||||||||||| | |
Sbjct 745 AGCGAGCACTTGGTTGAGTCACCAGCTGG---TGAAACTTTCTTGGTTAAGTGGTACAAG 801
Query 893 AAG------GACAC-ATC--CAATGGCGTGGTGAAAATGAAAACA-AGAGCTGTAATGGT 942
||| | || ||| ||| || | | | ||||||||||| | |||| |||||||
Sbjct 802 AAGTCTTCTGGCAAGATCATCAAGGGTATTGCGCAAATGAAAACACA-AGCTTTAATGGT 860
Query 943 CTTCAAGCTAT-ACGAAGAAGGGAAA-GCTGTTTACACTCAAGACATCGGAGATCTCTGC 1000
|||||||| | ||||| |||| ||| || ||||||||||||||||| ||||||||||||
Sbjct 861 GTTCAAGCT-TGACGAACAAGG-AAACGCGGTTTACACTCAAGACATTGGAGATCTCTGC 918
Query 1001 ATTTTCCTGTCAAAGTCTGAACCCTTTTGTGTCACTGCTAGCTCCTTTCCCGG-CATGTG 1059
|||||||| |||||||||||||| ||||||||| |||||||||| |||||||| | ||||
Sbjct 919 ATTTTCCTCTCAAAGTCTGAACCTTTTTGTGTCCCTGCTAGCTCTTTTCCCGGAC-TGTG 977
Query 1060 CCCTAACGAA-GTCCACAC-CTTGGA-TGTTGACGAACACGCACTT-GTCGATCTGTCTG 1115
||||||| | ||| |||| ||| || ||| |||||| || ||| ||| ||||| ||
Sbjct 978 CCCTAAC-ACTGTC-ACACTCTTTGACTGT-GACGAAGGCGG-CTTTGTCCATCTGGATG 1033
Query 1116 ATTCCTCCATCATTA 1130
||||| |||||||||
Sbjct 1034 ATTCCACCATCATTA 1048
> Ahg495521 jgi|Araly1|495521|fgenesh2_kg.8__1337__AT5G54330.1
Length=1071
Score = 577 bits (312), Expect = 9e-164
Identities = 622/770 (81%), Gaps = 27/770 (4%)
Strand=Plus/Plus
Query 299 TTGGAAAAGAAGGTACCAATGGAGTTGGTGGATGGAAAGGCCAGGGTAACTATCGGGTCC 358
|||||||||||||| || | ||||||||| | | | ||| |||||| ||||||||
Sbjct 172 TTGGAAAAGAAGGTGCCTCTAGAGTTGGTGCACAGTGATCCCATGGTAACGATCGGGTCA 231
Query 359 TCTCATGGCTGGGTAGCTACTTTGAAAGACGATGGAATAGTGCGTCTCCAAGACGATCTA 418
|| ||||| ||||||||||||||||| ||||| || ||| ||||||||||||| ||| ||
Sbjct 232 TCCCATGGTTGGGTAGCTACTTTGAAGGACGACGGTATATTGCGTCTCCAAGATGATTTA 291
Query 419 AACCTGGTTGCATCTGATACAG-ATCCGAAACGCATTCCCCTGCCTCCTCTTGTGACTCT 477
|||| || |||||| |||| | | || |||||||||||| ||||||||||||| |||||
Sbjct 292 AACCCGGCTGCATCGGATA-TGAACCCTAAACGCATTCCCTTGCCTCCTCTTGTAACTCT 350
Query 478 GCCTCATTGCCAAAC-CAAAGTTGTCACCAACGTCG-CCATGTCTTCTTCTTCTCCTGAG 535
||| ||||||||||| |||| | |||||||| || | | |||||||| |||||||| |||
Sbjct 351 GCCCCATTGCCAAACTCAAA-TCGTCACCAATGT-GTCAATGTCTTCATCTTCTCCCGAG 408
Query 536 GATGAAGACTGTGTTGTCGCTCTCAAGTTCTTAGGACCTCAGCTCAGCTTATGTAGACCA 595
||||| |||||||| || ||| |||||||||||||||||||||||||||| || |||||
Sbjct 409 GATGAGGACTGTGTCGTGGCTGTCAAGTTCTTAGGACCTCAGCTCAGCTTTTGCAGACCG 468
Query 596 GCTCAAAG-AAACTCCGAGTGGACCAACATCAGAATCGAAAACCCATGTTTCTACTCATC 654
|||||| | |||| ||||||||| |||| ||||||||| |||||| ||||||||||| ||
Sbjct 469 GCTCAACGTAAAC-CCGAGTGGATCAACGTCAGAATCGCAAACCCCTGTTTCTACTCCTC 527
Query 655 CCCTGTTATGTTTTCCAAGAAAGACGGCACGTTTCGAATTCTTGGATCTGGAGGTCACCT 714
|| ||| |||| ||| ||||| | | || |||||| |||| ||||||||||| || ||
Sbjct 528 CCGTGTCATGTATTCGGAGAAACATGACATGTTTCGCATTCCCGGATCTGGAGGCCATCT 587
Query 715 CATTGGATCATGGGATCTCCACAAACACAAGAACAAACCCAAGATTCAGAGGTTGCGATT 774
||||||||||||||||||| | ||||| | ||| |||||||||||||| | |||||||
Sbjct 588 CATTGGATCATGGGATCTCGGTACACACATGCACACACCCAAGATTCAGAAGCTGCGATT 647
Query 775 CAAAAACCTTCCCGAGCTCACCAAGACCAAAAGGGAGCT-CTTGCATTCGTGTTGCACGA 833
||||| ||||| | || | ||||||| | || |||| || | |||| || || || |
Sbjct 648 TAAAAAGTTTCCCAATCTTGCAAAGACCACACGGAAGCTTCTGG-ATTCTTGCTGTACAA 706
Query 834 GCCAACACTTGGTTGAGTCAACAA-CCACAAATGA-GAC-T-TTCTTGGTTAAGTGGTAT 889
|| | |||||||| || ||| | | |||| || || | ||||||||||||||||||
Sbjct 707 GCGAGCACTTGGTGGAATCA-CGATCCACTGGTGGTGAAATGTTCTTGGTTAAGTGGTAT 765
Query 890 A-G-GAAGGAC--ACATC--CAATGGCGTGGTGAAAATGAAAACAAGA-GCTGTAATGGT 942
| | ||| | | ||| |||||| || | ||||||| ||| || ||| |||||||
Sbjct 766 AAGAGAACCTCTGAGATCGTCAATGGTGTTGCGAAAATGGGAACC-GAAGCTTTAATGGT 824
Query 943 CTTCAAGCTAT-ACGAAGAAGGGAAA-GCTGTTTACACTCAAGACATCGGAGATCTCTGC 1000
|||||||| | ||||| |||| ||| || |||||||| |||||||| ||||||||||||
Sbjct 825 GTTCAAGCT-TGACGAACAAGG-AAACGCGGTTTACACCCAAGACATTGGAGATCTCTGC 882
Query 1001 ATTTTCCTGTCAAAGTCTGAACCCTTTTGTGTCACTGCTAGCTCCTTTCC 1050
|| | ||| ||||| |||||||| ||||||||| ||||||| ||||||||
Sbjct 883 ATGTACCTCTCAAAATCTGAACCTTTTTGTGTCCCTGCTAGTTCCTTTCC 932
> Ahg493544 jgi|Araly1|493544|fgenesh2_kg.7__2977__AT4G13680.1
Length=1242
Score = 459 bits (248), Expect = 3e-128
Identities = 548/687 (80%), Gaps = 43/687 (6%)
Strand=Plus/Plus
Query 433 TGATACAGATCCGAAACGCATTCCCCTGCCTCCTCTTGTGACTCTGCCTCATTGCCAAAC 492
||| || ||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 355 TGAAACGGATCCGAAACGCATTTTGCTGCCTCCTCTTGTAACTCTGCCTCATTGCCAAA- 413
Query 493 CA-AAGT-TGTCACCAACGTCGCCATGTCTTCTTCTTCTCCTGAGGATGAAGACTGTGTT 550
|| || | |||||||||||| ||||||||| | ||||| ||||| || || |||||||||
Sbjct 414 CACAA-TATGTCACCAACGTGGCCATGTCTACGTCTTCCCCTGAAGAAGAGGACTGTGTT 472
Query 551 GTCGCTCTCAAGTTCTTAGGACCTCAGCTCAGCTTATGTAGACCAGCTCAAAGAAACTCC 610
|| ||| |||||||||| |||||||| |||||||| || ||||| |||||||| ||||||
Sbjct 473 GTGGCTGTCAAGTTCTTGGGACCTCAACTCAGCTTTTGCAGACCCGCTCAAAGCAACTCC 532
Query 611 GAGTGGACCAACATCAGAATCGA-AAACCCATGTTTCTACTCATCCCCTGTTATGTTTTC 669
||||||| |||| ||||||| || | |||| || |||| ||| |||||||| ||||||||
Sbjct 533 GAGTGGATCAACTTCAGAAT-GACAGACCCCTGCTTCTTCTCCTCCCCTGTCATGTTTTC 591
Query 670 CAAGAAAGACGGCACGTTTCGAAT-TCTTGGATCTGGAGGTCACCTCATTGGATCATGGG 728
||||||||| | || |||||| || | || |||||||| |||||||| ||||||||||
Sbjct 592 CAAGAAAGATGACATGTTTCGCATAGC-CGGCTCTGGAGGCCACCTCATCGGATCATGGG 650
Query 729 ATCTCCACAAACACA-AG-AACAAACCCAAGATT-CAGAGGTTGC-GATTCAAAAACCTT 784
||||||| |||| || || ||||| |||||| || |||| |||| | ||| ||||||||
Sbjct 651 ATCTCCA-AAAC-CATAGCAACAACCCCAAG-TTGCAGATCTTGCGGTTTC-AAAACCTT 706
Query 785 CCCGAGCTCACCAAGACCAAAA-GGGAGC-TCTTGCATTCGTGTTGCACGAGCCAACACT 842
||| |||| | ||| ||||| | || | || || ||||||| | ||| ||| ||||||
Sbjct 707 CCCAAGCTGTCTGAGA-CAAAACGAGACCTTC-TGGATTCGTGCTACACAAGCGAACACT 764
Query 843 TGGTTGAGTCAACAACCACAAATGAGACTTTC-TTGGTTAAGTGGTATAGGAAGGACA-C 900
|||| ||||||| |||||| | ||| |||||| || ||||||| ||| ||||| |||| |
Sbjct 765 TGGTGGAGTCAATAACCACCAGTGAAACTTTCATT-GTTAAGTTGTACAGGAA-GACAGC 822
Query 901 ----ATC--CAATGG-CGTGGTGAAAATGAAAACAAG-AGCTGTAATGGTCTTCAAGCTA 952
||| ||| || | | | ||||||||| || ||| ||||||| |||| ||||
Sbjct 823 AGAGATCGTCAAAGGTATTCCT-AGAATGAAAAC-AGAAGCAATAATGGTGTTCAGGCTA 880
Query 953 TACGAAGAAGGGAAA-GCTGTTTACACTCAAGACATCGGAGATCTCTGCATTTTCCTGTC 1011
| |||||| ||||| |||||||||||||||||||||||||||| ||||| ||| |
Sbjct 881 GATGAAGAA-GGAAACGCTGTTTACACTCAAGACATCGGAGATCAAAGCATTCACCTCAC 939
Query 1012 AAAGTCTGAACCCTTT-TGTGTCACTGCTAGCTCCTTTCCCGGCATGTG-C--CCTAACG 1067
||| |||||| | ||| |||||| || | ||||||| || | || || | | ||||||
Sbjct 940 AAATTCTGAAGC-TTTCTGTGTCCCTTCGAGCTCCTCTCTCTGCCTGCGTCGACCTAACT 998
Query 1068 AAGTCCACA-CCTTGGATGTTGACGAA 1093
||| | | ||||| |||| ||||||
Sbjct 999 TCGTCAAAATCCTTG-ATGTCGACGAA 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52412177120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5