BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52950.1
Length=2847
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331653 jgi|Araly1|331653|fgenesh1_pm.C_scaffold_8000996 4235 0.0
> Ahg331653 jgi|Araly1|331653|fgenesh1_pm.C_scaffold_8000996
Length=2850
Score = 4235 bits (2293), Expect = 0.0
Identities = 2679/2864 (94%), Gaps = 31/2864 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGGAGATTTGTTATACGCCAAAACGCAGCGTTTTGTGCTTTTGATAGATCTTAAT 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCTGGAGATTTGTTATACGCCAAAACGCAGCGTTTCGTGCTTTTGATAGATCTTAAT 60
Query 61 CCGCTTCTGATCAAACCCAATTCGGAGCAATACCTAGCCGTCGTGATCTCCGCCGCCGAG 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCGCTTCTGGTCAAACCCAATTCGGAGCAATACCTAGCCGTCGTGATCTCCGCCGCCGAG 120
Query 121 AAGcttctcttatttcctcctttatctgcttctctcttctctttcaaattcttcttttct 180
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGCTTCTCTCGTTTCCTCCTTTATCTGCTTCTCTCTTCTCTTTCAAATTCTTCTTTTCT 180
Query 181 tctctttcttctctcttatcatcctcaaagctctcgtcactctcaatttcatcttctcCG 240
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
Sbjct 181 TCTCTTTCTTCTCTCTTATCTTCCTCAAAGCTCTCTTCACTCTCAATTTCATCTTCTTCA 240
Query 241 CTTTCATTTGACCTTCCTAACCCTACACTCGTCTCTCTCAAACGCGCCATCGACGCGGTT 300
||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||
Sbjct 241 CTTTCATTTGACCTTCCTAACCCTACACTTGTCTCTCTTAAACGCGCCATCGACACGGTT 300
Query 301 AAAGGATATGAACTTCGATCTAGCTCCACGGTGGCGACGGCGGCATCGCCTCGTGGGGTT 360
||| ||| ||||||||||| || | | | ||||| ||||||||||||||||||||||
Sbjct 301 AAACGATGCGAACTTCGATCCAG-TTCTC--TGGCGGTGGCGGCATCGCCTCGTGGGGTT 357
Query 361 AATGTCGCGGCGAATTTGCGACAGATTGTTTATGATTACGCTTGGGAACCGGTGGTTCGA 420
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 358 AATGTCGCGGCGAATTTGCGACAGATCGTTTATGATTACGCTTGGGAGCCGGTGGTTCGA 417
Query 421 GATCCGGAGATAGGTATGATTCCTGGATTTACTGATGGTGGATTAGATGTTGTGAGGTCG 480
||||||||||||||||||||||||||||||||||||||||| |||||| | || | ||||
Sbjct 418 GATCCGGAGATAGGTATGATTCCTGGATTTACTGATGGTGGGTTAGATATCGTTAAGTCG 477
Query 481 AATTTGGTTGTGATGTTTTCCCCAATTTCTAGGGATTTGGATTGGGTTTCTGAGTTTCTT 540
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AATTTGGTCGTGATGTTTTCCCCAATTTCTAGGGATTTGGATTGGGTTTCTGAGTTTCTT 537
Query 541 GATGTTAAGAGTGGTGATGAGTGTTTTAGCGACTTGGATTTGTTTAAGTCAAAGTTAAGG 600
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 538 GATGTTAAGACTGGTGATGAGTGTTTTAGCGACTTGGATTTGTTCAAGTCAAAGTTAAGG 597
Query 601 GAGATTTTTTATTGTGTGAATGAGTTATTTGATGATAGAGATATTCAATTAAGCTGGATT 660
||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GAGATTTTTAACTGTGTTAATGAGTTATTTGATGATAGAGATATTCAATTAAGCTGGATT 657
Query 661 GATGTTAAATCT-G-GA--GA-----TGAAAGATGTGAATTGGGATTGAAGTCTGGGTTT 711
||||| |||||| | || || ||||| |||||||||||||||||||||||||||
Sbjct 658 GATGTCAAATCTGGAGATGGATTTGGTGAAATTTGTGAATTGGGATTGAAGTCTGGGTTT 717
Query 712 TTCGATAGTGGGATTAGAGAATTGGGTTGGGGGCATTGTTCTACTGATTCAATTGTTTTT 771
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 718 TTCGATAGTGGGATTAGAGAATTGGGTTGGGGACATTGTTCTACGGATTCAATTGTTTTT 777
Query 772 GGTTCTTCAGTTGTTCCCTTTGGATTAATATATCC-AGCAATTGGTATTTCCCCAAAGCT 830
||||||||| ||||||||||||||||||||||||| | |||||||||||| ||| |||||
Sbjct 778 GGTTCTTCAATTGTTCCCTTTGGATTAATATATCCTA-CAATTGGTATTTGCCCGAAGCT 836
Query 831 ATCTACTAGCCAGAAATTTACCCTTCAGGCTAGTCTTGAGATTGCAGATATTAATGGTAA 890
|||| |||| ||||||||||| |||| || |||||||||||||||||| ||||||||||
Sbjct 837 ATCTGCTAGTCAGAAATTTACTGTTCAAGCCAGTCTTGAGATTGCAGATGTTAATGGTAA 896
Query 891 ACCTATGGAATGCAAGTGTGGTGGTGAGTTAGAGTTTTCTTCTTCTGAAATATT-TAGTG 949
||||||||||||||| || | |||||| |||||||||||||||||||||| || |||||
Sbjct 897 ACCTATGGAATGCAA--GT-GCGGTGAGCTAGAGTTTTCTTCTTCTGAAAT-TTCTAGTG 952
Query 950 GGAAGAGGTGTGATGAGTTTATCAACTTAGCTAGTGGGACTGAGCCAGTCAATCATGACT 1009
|||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct 953 GGAAGAGGTGTGATGATTTTATCAACTTAGCTAGTGGGCCTGAACCAGTCAATCAGGACT 1012
Query 1010 CTCTAGTTGAACAGTTTTGTGATGGGAG-TACCAAACTCAGTATTAAGGCCTTGAGGATG 1068
||||| |||| |||||||||| |||| | ||||||||| |||||||| ||||||||||||
Sbjct 1013 CTCTAATTGACCAGTTTTGTGGTGGG-GTTACCAAACTTAGTATTAAAGCCTTGAGGATG 1071
Query 1069 TGTGATGATCTTATTGAACTAGAGAGGTATACTTGCGATACTTTTGTTGTTCATCAAGTC 1128
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1072 TGTGATGATCTTATTGAACTAGAGAGGTATACTTGTGATACTTTTGTTGTTCATGAAGTT 1131
Query 1129 TCCCAGGACTCTGATCAAGATCAGGAGGAGGAGAGTGCGTTTTGGGCTGACCTGGTTTTT 1188
|||||||| |||||||||||||||||| ||||||||| ||||||||| |||| |||| ||
Sbjct 1132 TCCCAGGAATCTGATCAAGATCAGGAGCAGGAGAGTGTGTTTTGGGCAGACCGGGTTCTT 1191
Query 1189 CAGATATTAG-GAAAGGAGACGGGTGAGAGAGTAGCCAAAAGATCATCACCCATTTGGCA 1247
|||||||||| | |||||||| ||||||| |||||| |||||||||||||||||||||||
Sbjct 1192 CAGATATTAGTG-AAGGAGACAGGTGAGAAAGTAGCGAAAAGATCATCACCCATTTGGCA 1250
Query 1248 GATCTTATTAAGTTATCTCTATAGGGAAGGTTTCTCAGCATTGGTATCTTTTTCAAATAG 1307
||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1251 GATATTATTAAGTTATCTCTATAGGGAAGGTTACTCAGCACTGGTATCTTTTTCAAATAG 1310
Query 1308 CAATGGTAGTTTGCGGACAGGAATCCTCAAGCCCTTCACTTTTTCCTCGGCCTTAATCTG 1367
|||||||||||||||||||||||||||||||||||||||||| || || || ||| ||||
Sbjct 1311 CAATGGTAGTTTGCGGACAGGAATCCTCAAGCCCTTCACTTTCTCGTCAGCTTTAGTCTG 1370
Query 1368 TGTTTTTGACAATGGAGTGTCTCCTCAAACTGTGGATCATGAAGATAGCAGGAAGAAAGT 1427
||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1371 TGTTTTTGAGAATGGAGTCTCTCCTCAAACTGTGGATCATGAAGATAGTAGGAAGAAAGT 1430
Query 1428 CAGTTGTAGCGAATATAAAAGAAAACCAAGGAAAAATTCTCTTAATGACATTAGCTGGGA 1487
|||||||| || |||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1431 CAGTTGTAACGTATATAAAAGAAAACCAAGAAAAAATACTCTTAATGACATTAGCTGGGA 1490
Query 1488 GGAGTTCTGCAGATCAGTGAAAGATTATGGTCAAATAGATCTAGAAGATGTTTATTTCTT 1547
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1491 GGAGTTCTGCAGATTAGTGAAAGATTATGGTCAAATAGATATAGAAGATGTTTATTTCTC 1550
Query 1548 CAAG-TATAGCAAGTCGAAGAAACTTAAGTTTCTGAAATGCTGGATGAAACAGATTAGTA 1606
|||| | ||||||||| |||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1551 CAAGCT-TAGCAAGTCCAAGAAATTTAAGTTTCTGAAATGTTGGATGAAACAGATTAGTA 1609
Query 1607 AACCCAGAGGTTGCAGCTTATCCGTGGCTAGTAATTGCAATGCATTGGAGGATGT-GGAC 1665
|||||||||| ||||||||||||||||||||| |||||||||||||||| ||||| |||
Sbjct 1610 AACCCAGAGGCTGCAGCTTATCCGTGGCTAGTTATTGCAATGCATTGGAAGATGTGGGA- 1668
Query 1666 GCAAATCCAATTGAGGAAAAGAACAACTCCTCTGAAGAGACAGATAAA-GCTAGTTCTCC 1724
|||||||| ||||||||||| | |||||||||||||||||||| ||| ||||| ||| |
Sbjct 1669 GCAAATCCGATTGAGGAAAATAGTAACTCCTCTGAAGAGACAGA-AAAGGCTAGCTCTTC 1727
Query 1725 TTTACCTCTAGCTGAAGAGGACATTGCTTTGAGTGGAAATCGTATATCCGGAAAGCAGGA 1784
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1728 TTTACCTGTAGCTGAAGAGGACATTGCTTTGAGTGGAAATCGTATATCTGGAAAGCAGGA 1787
Query 1785 AAGTAATACGTATGTTCATGCATCAGAATCATCAGAGAATTTCTTCGTTAGTCTTCCTAG 1844
|| | || | | ||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1788 AAATGATGCTTCTGTTCATGCATCAGAGTCATCAGAGAATTTCTTCGCTAGTCTTCCTAG 1847
Query 1845 TAAAATCAAGCAAGGGATAGAGTCTGAAGAAATAGACTTGTCAGCTCTTGCCGAGCGGCT 1904
||||||||| |||||||| |||||||| |||||||| ||||||||||| |||||||||||
Sbjct 1848 TAAAATCAAACAAGGGATTGAGTCTGAGGAAATAGAATTGTCAGCTCTGGCCGAGCGGCT 1907
Query 1905 TGTCAAGTCTTGTGTCTTCTACTCCTCTCAAAGAGCTGAGAAGGACTATAGCTGTGAGAG 1964
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1908 TGTCAAGTCCTGTGTCTTCTACTCCTCTCAAAGAGCTGAGAAGGACTATAGCTGTGAGAG 1967
Query 1965 TGGAACCCTCTTGTTGGTCATTGACGAGCTAACCAAGATGTTACTGAAAGATCCGAAAGA 2024
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1968 TGGAACCCTCTTGTTGGTTACTGACGAGCTAACCAAGATGTTACTGAAAGATCCGAAAGA 2027
Query 2025 TTTAGTTGCCAAGTTCAAAAAGAAAGATTCATCATCAGTGGCTAGTGAGCGGAATTG-TG 2083
||||||||||||||||||||||||||||||||||||| ||| ||||||||||| || ||
Sbjct 2028 TTTAGTTGCCAAGTTCAAAAAGAAAGATTCATCATCAATGGAAAGTGAGCGGAA-TGCTG 2086
Query 2084 ATGAAGCTGGACCCAGTAGGATCGTTAGAGAATACGAGCTGCAGATTCTTTTCAGGATGG 2143
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2087 ATGAAGCTGCACCCAGTAGCATCGTTAGAGAATACGAGCTGCAGATTCTTTTCAGGATGG 2146
Query 2144 AGATTCTAAGATGTAAGAAAGGTTTGGGAAATGAAGAATCTGTGACACAGAAGTTTGCAA 2203
|||||||||||||||||| ||||||||| | ||| ||||||||||||||||||||||| |
Sbjct 2147 AGATTCTAAGATGTAAGATAGGTTTGGGGAGTGAGGAATCTGTGACACAGAAGTTTGCGA 2206
Query 2204 AACAGATTTGCATGTTCCTTGAGGGCATTCAGTGCAAGTTAGATGGCGGATTCTTTGGTG 2263
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2207 AACAGATTTGCATGTTCCTTGAGGGCATTCAGTGTAAGTTAGATGGCGGATTCTTTGGTG 2266
Query 2264 AATGGAGCCTTGATAAGTATGTAGACAAAACTATAAAAGCCAGGTATCAGCATATTCTGG 2323
| |||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| |
Sbjct 2267 AGTGGAGCCTTGATAAGTATGTCGACAAAACTATAAAAGCCAGGTATCATCATGTTCTTG 2326
Query 2324 GAGGAGCTGTCAATATAATATATACAGAGATGGATCTGCTCATGTTCACTGATGAGGATC 2383
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2327 GAGAAGCTGTCAATATAATATATACAGAGATGGATCTGCTCATGTTCACTGATGAGGATC 2386
Query 2384 TTGAAGATAGTTTCATGAACAATGAAGACAGTAGTCAATCAGGGAGAGAAAATATCCATA 2443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2387 TTGAAGATAGTTTCATGAACAATGAAGACAGTAGTCAATCAGGGAGAGAAAATATCCATA 2446
Query 2444 GCAATTTCAAAAATCATCATCATAGTCAAAGTAATGAAGATGTTCCTGGTACGAGTAAGC 2503
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2447 GCAATTTCAAAAGTCATCATCATAGTCAAAGAAATGAAGATGTTCCTGGTACGAGTAAGC 2506
Query 2504 AGAAAAACACTGAGGAAAGCAGAGAAGCTAAGAAAGAGGTTGAAGCACAAGGAATGAGGG 2563
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2507 AGAAAAACACTGAGGAGTGCAGAGAAGCTAAGAAAGAGGTTGAAGCACAAGAAATGAGGG 2566
Query 2564 AGAGGGCAAGAAGATTCTCGAGTTTCACAAGTTGGATGCCTGATCTTTGTAGAGTCTGGG 2623
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2567 AGAGGGCAAGAAGATTCTCGAGTTTCACAAGTTGGATGCCTGATCTTTGTAGAGTTTGGG 2626
Query 2624 CACCAAAACAAACGAAGAACTCTAAAGGCAAGGCCGACCAGCAACAGAGAACGGCCAAAA 2683
||||||||||| |||||||||||||||||||| |||||||||| ||||| || ||||
Sbjct 2627 CACCAAAACAAGTAAAGAACTCTAAAGGCAAGGCGGACCAGCAACCGAGAATGGTGAAAA 2686
Query 2684 GAAAGAAGGAGCAAAGATCAGTGGAATATGATAGAGTATGTGAGACACCAATGACAACAA 2743
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2687 GGAAGAAGGAGCAAAGGTCAGTGGAATATGATAGAGTATGTGAGACACCAATGACAACAA 2746
Query 2744 TAGAGACCAAACGAATACGAACTGGTAACAAAGATGACTACGAATGTGAGACTTTGCCTC 2803
||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 2747 TAGAGACCAAACGAACACGAACTGGTAACAAAGATGGCTACGAGTGTGAGACTTTGCCTC 2806
Query 2804 GTAGTTCAGTACCAAAGGCTTTGTTTCAGGATGATTGTTCTTAG 2847
|||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2807 GTAGTTCAGTACCAAAGGCTTTGTTTCAGGATGATTCTTCTTAG 2850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107452581145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5